PMC:3320587 / 21970-22077
Annnotations
pmc-enju-pas
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bionlp-st-ge-2016-test-proteins
{"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T22447","span":{"begin":51,"end":56},"obj":"Protein"},{"id":"T22446","span":{"begin":12,"end":17},"obj":"Protein"},{"id":"T14904","span":{"begin":12,"end":17},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"MTb induces NFAT5 gene expression and knockdown of NFAT5 impairs HIV-1 replication during MTb co-infection."}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T15604","span":{"begin":12,"end":17},"obj":"http://www.uniprot.org/uniprot/O94916"},{"id":"T22880","span":{"begin":51,"end":56},"obj":"http://www.uniprot.org/uniprot/O94916"},{"id":"T22879","span":{"begin":12,"end":17},"obj":"http://www.uniprot.org/uniprot/O94916"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"MTb induces NFAT5 gene expression and knockdown of NFAT5 impairs HIV-1 replication during MTb co-infection."}
GO-BP
{"project":"GO-BP","denotations":[{"id":"T14959","span":{"begin":18,"end":33},"obj":"http://purl.obolibrary.org/obo/GO_0010467"},{"id":"T22462","span":{"begin":18,"end":33},"obj":"http://purl.obolibrary.org/obo/GO_0010467"}],"text":"MTb induces NFAT5 gene expression and knockdown of NFAT5 impairs HIV-1 replication during MTb co-infection."}
sentences
{"project":"sentences","denotations":[{"id":"T22397","span":{"begin":0,"end":107},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"MTb induces NFAT5 gene expression and knockdown of NFAT5 impairs HIV-1 replication during MTb co-infection."}
simple1
{"project":"simple1","denotations":[{"id":"T22478","span":{"begin":51,"end":56},"obj":"Protein"},{"id":"T22477","span":{"begin":12,"end":17},"obj":"Protein"},{"id":"T14984","span":{"begin":12,"end":17},"obj":"Protein"}],"text":"MTb induces NFAT5 gene expression and knockdown of NFAT5 impairs HIV-1 replication during MTb co-infection."}
BioNLP16_DUT
{"project":"BioNLP16_DUT","denotations":[{"id":"T23497","span":{"begin":23,"end":33},"obj":"Gene_expression"},{"id":"T23496","span":{"begin":38,"end":47},"obj":"Negative_regulation"},{"id":"T23495","span":{"begin":4,"end":11},"obj":"Positive_regulation"},{"id":"T23480","span":{"begin":51,"end":56},"obj":"Protein"},{"id":"T23479","span":{"begin":12,"end":17},"obj":"Protein"},{"id":"T16740","span":{"begin":23,"end":33},"obj":"Gene_expression"},{"id":"T16739","span":{"begin":4,"end":11},"obj":"Positive_regulation"},{"id":"T16684","span":{"begin":12,"end":17},"obj":"Protein"}],"relations":[{"id":"R12363","pred":"themeOf","subj":"T16684","obj":"T16740"},{"id":"R12414","pred":"themeOf","subj":"T16740","obj":"T16739"},{"id":"R17485","pred":"themeOf","subj":"T23479","obj":"T23497"},{"id":"R17486","pred":"themeOf","subj":"T23480","obj":"T23496"},{"id":"R17503","pred":"themeOf","subj":"T23497","obj":"T23495"}],"text":"MTb induces NFAT5 gene expression and knockdown of NFAT5 impairs HIV-1 replication during MTb co-infection."}
BioNLP16_Messiy
{"project":"BioNLP16_Messiy","denotations":[{"id":"T22976","span":{"begin":23,"end":33},"obj":"Gene_expression"},{"id":"T22975","span":{"begin":57,"end":64},"obj":"Negative_regulation"},{"id":"T22974","span":{"begin":4,"end":11},"obj":"Positive_regulation"},{"id":"T22973","span":{"begin":38,"end":47},"obj":"Negative_regulation"},{"id":"T15823","span":{"begin":23,"end":33},"obj":"Gene_expression"},{"id":"T15822","span":{"begin":4,"end":11},"obj":"Positive_regulation"},{"id":"T15767","span":{"begin":12,"end":17},"obj":"Protein"},{"id":"T22958","span":{"begin":51,"end":56},"obj":"Protein"},{"id":"T22957","span":{"begin":12,"end":17},"obj":"Protein"}],"relations":[{"id":"R11603","pred":"themeOf","subj":"T15767","obj":"T15823"},{"id":"R11645","pred":"themeOf","subj":"T15823","obj":"T15822"},{"id":"R16994","pred":"themeOf","subj":"T22957","obj":"T22976"},{"id":"R16995","pred":"themeOf","subj":"T22958","obj":"T22973"},{"id":"R17010","pred":"causeOf","subj":"T22973","obj":"T22974"},{"id":"R17011","pred":"causeOf","subj":"T22973","obj":"T22974"},{"id":"R17012","pred":"causeOf","subj":"T22973","obj":"T22975"},{"id":"R17013","pred":"causeOf","subj":"T22973","obj":"T22975"},{"id":"R17014","pred":"themeOf","subj":"T22976","obj":"T22974"},{"id":"R17015","pred":"themeOf","subj":"T22976","obj":"T22974"},{"id":"R17016","pred":"themeOf","subj":"T22976","obj":"T22973"},{"id":"R17017","pred":"themeOf","subj":"T22976","obj":"T22975"},{"id":"R17018","pred":"themeOf","subj":"T22976","obj":"T22975"}],"text":"MTb induces NFAT5 gene expression and knockdown of NFAT5 impairs HIV-1 replication during MTb co-infection."}
DLUT931
{"project":"DLUT931","denotations":[{"id":"T22913","span":{"begin":4,"end":11},"obj":"Positive_regulation"},{"id":"T22912","span":{"begin":38,"end":47},"obj":"Negative_regulation"},{"id":"T22911","span":{"begin":23,"end":33},"obj":"Gene_expression"},{"id":"T22896","span":{"begin":51,"end":56},"obj":"Protein"},{"id":"T22895","span":{"begin":12,"end":17},"obj":"Protein"},{"id":"T15708","span":{"begin":4,"end":11},"obj":"Positive_regulation"},{"id":"T15707","span":{"begin":23,"end":33},"obj":"Gene_expression"},{"id":"T15652","span":{"begin":12,"end":17},"obj":"Protein"}],"relations":[{"id":"R11551","pred":"themeOf","subj":"T15707","obj":"T15708"},{"id":"R16974","pred":"themeOf","subj":"T22911","obj":"T22913"},{"id":"R11501","pred":"themeOf","subj":"T15652","obj":"T15707"},{"id":"R16960","pred":"themeOf","subj":"T22895","obj":"T22911"},{"id":"R16961","pred":"themeOf","subj":"T22896","obj":"T22912"}],"text":"MTb induces NFAT5 gene expression and knockdown of NFAT5 impairs HIV-1 replication during MTb co-infection."}
bionlp-st-ge-2016-test-ihmc
{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T23575","span":{"begin":90,"end":106},"obj":"Regulation"},{"id":"T23572","span":{"begin":12,"end":33},"obj":"Gene_expression"},{"id":"T23562","span":{"begin":0,"end":3},"obj":"Protein"},{"id":"T23552","span":{"begin":90,"end":93},"obj":"Protein"},{"id":"T23548","span":{"begin":12,"end":17},"obj":"Protein"},{"id":"T23544","span":{"begin":48,"end":56},"obj":"Protein"},{"id":"T16896","span":{"begin":12,"end":33},"obj":"Gene_expression"},{"id":"T16848","span":{"begin":12,"end":17},"obj":"Protein"},{"id":"T16832","span":{"begin":0,"end":3},"obj":"Protein"}],"relations":[{"id":"R12446","pred":"themeOf","subj":"T16848","obj":"T16896"},{"id":"R17517","pred":"themeOf","subj":"T23548","obj":"T23572"},{"id":"R17518","pred":"themeOf","subj":"T23552","obj":"T23575"}],"text":"MTb induces NFAT5 gene expression and knockdown of NFAT5 impairs HIV-1 replication during MTb co-infection."}
bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T23093","span":{"begin":106,"end":107},"obj":"."},{"id":"T23092","span":{"begin":94,"end":106},"obj":"NN"},{"id":"T23091","span":{"begin":90,"end":93},"obj":"NNP"},{"id":"T23090","span":{"begin":83,"end":89},"obj":"IN"},{"id":"T23089","span":{"begin":71,"end":82},"obj":"NN"},{"id":"T23088","span":{"begin":65,"end":70},"obj":"JJ"},{"id":"T23087","span":{"begin":57,"end":64},"obj":"NNS"},{"id":"T23086","span":{"begin":51,"end":56},"obj":"CD"},{"id":"T23085","span":{"begin":48,"end":50},"obj":"IN"},{"id":"T23084","span":{"begin":38,"end":47},"obj":"NN"},{"id":"T23083","span":{"begin":34,"end":37},"obj":"CC"},{"id":"T23082","span":{"begin":23,"end":33},"obj":"NN"},{"id":"T23081","span":{"begin":18,"end":22},"obj":"NN"},{"id":"T23080","span":{"begin":12,"end":17},"obj":"NNP"},{"id":"T23079","span":{"begin":4,"end":11},"obj":"VBZ"},{"id":"T23078","span":{"begin":0,"end":3},"obj":"NNP"},{"id":"T16157","span":{"begin":23,"end":33},"obj":"NN"},{"id":"T16156","span":{"begin":18,"end":22},"obj":"NN"},{"id":"T16155","span":{"begin":12,"end":17},"obj":"NNP"},{"id":"T16154","span":{"begin":4,"end":11},"obj":"VBZ"},{"id":"T16153","span":{"begin":0,"end":3},"obj":"NNP"}],"relations":[{"id":"R11832","pred":"nsubj","subj":"T16153","obj":"T16154"},{"id":"R11833","pred":"ROOT","subj":"T16154","obj":"T16154"},{"id":"R11834","pred":"compound","subj":"T16155","obj":"T16157"},{"id":"R11835","pred":"compound","subj":"T16156","obj":"T16157"},{"id":"R11836","pred":"dobj","subj":"T16157","obj":"T16154"},{"id":"R17084","pred":"nsubj","subj":"T23078","obj":"T23079"},{"id":"R17085","pred":"ROOT","subj":"T23079","obj":"T23079"},{"id":"R17086","pred":"compound","subj":"T23080","obj":"T23082"},{"id":"R17087","pred":"compound","subj":"T23081","obj":"T23082"},{"id":"R17088","pred":"dobj","subj":"T23082","obj":"T23079"},{"id":"R17089","pred":"cc","subj":"T23083","obj":"T23082"},{"id":"R17090","pred":"conj","subj":"T23084","obj":"T23082"},{"id":"R17091","pred":"prep","subj":"T23085","obj":"T23082"},{"id":"R17092","pred":"nummod","subj":"T23086","obj":"T23087"},{"id":"R17093","pred":"pobj","subj":"T23087","obj":"T23085"},{"id":"R17094","pred":"compound","subj":"T23088","obj":"T23089"},{"id":"R17095","pred":"pobj","subj":"T23089","obj":"T23087"},{"id":"R17096","pred":"prep","subj":"T23090","obj":"T23089"},{"id":"R17097","pred":"compound","subj":"T23091","obj":"T23092"},{"id":"R17098","pred":"pobj","subj":"T23092","obj":"T23090"},{"id":"R17099","pred":"punct","subj":"T23093","obj":"T23079"}],"text":"MTb induces NFAT5 gene expression and knockdown of NFAT5 impairs HIV-1 replication during MTb co-infection."}
bionlp-st-ge-2016-test-tees
{"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T22994","span":{"begin":23,"end":33},"obj":"Gene_expression"},{"id":"T22993","span":{"begin":51,"end":70},"obj":"Protein"},{"id":"T22992","span":{"begin":12,"end":22},"obj":"Protein"},{"id":"T15946","span":{"begin":4,"end":11},"obj":"Positive_regulation"},{"id":"T15945","span":{"begin":23,"end":33},"obj":"Gene_expression"},{"id":"T15943","span":{"begin":12,"end":22},"obj":"Protein"},{"id":"T22995","span":{"begin":4,"end":11},"obj":"Positive_regulation"}],"relations":[{"id":"R11696","pred":"themeOf","subj":"T15943","obj":"T15945"},{"id":"R11697","pred":"themeOf","subj":"T15945","obj":"T15946"},{"id":"R17030","pred":"themeOf","subj":"T22992","obj":"T22994"},{"id":"R17031","pred":"themeOf","subj":"T22994","obj":"T22995"}],"text":"MTb induces NFAT5 gene expression and knockdown of NFAT5 impairs HIV-1 replication during MTb co-infection."}
testone
{"project":"testone","denotations":[{"id":"T22350","span":{"begin":4,"end":11},"obj":"Positive_regulation"},{"id":"T22335","span":{"begin":51,"end":56},"obj":"Protein"},{"id":"T22334","span":{"begin":12,"end":17},"obj":"Protein"},{"id":"T14596","span":{"begin":4,"end":11},"obj":"Positive_regulation"},{"id":"T14541","span":{"begin":12,"end":17},"obj":"Protein"}],"text":"MTb induces NFAT5 gene expression and knockdown of NFAT5 impairs HIV-1 replication during MTb co-infection."}
test3
{"project":"test3","denotations":[{"id":"T22377","span":{"begin":51,"end":56},"obj":"Protein"},{"id":"T22376","span":{"begin":12,"end":17},"obj":"Protein"},{"id":"T22361","span":{"begin":51,"end":56},"obj":"Protein"},{"id":"T22360","span":{"begin":12,"end":17},"obj":"Protein"},{"id":"T14685","span":{"begin":12,"end":17},"obj":"Protein"},{"id":"T14630","span":{"begin":12,"end":17},"obj":"Protein"}],"text":"MTb induces NFAT5 gene expression and knockdown of NFAT5 impairs HIV-1 replication during MTb co-infection."}