PMC:3320587 / 15399-15768 JSONTXT

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    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T6871","span":{"begin":360,"end":365},"obj":"NN"},{"id":"T6870","span":{"begin":358,"end":359},"obj":"-COMMA-"},{"id":"T6869","span":{"begin":350,"end":358},"obj":"NN"},{"id":"T6868","span":{"begin":344,"end":349},"obj":"DT"},{"id":"T6867","span":{"begin":339,"end":343},"obj":"IN"},{"id":"T6866","span":{"begin":334,"end":338},"obj":"NN"},{"id":"T6865","span":{"begin":329,"end":333},"obj":"NN"},{"id":"T6864","span":{"begin":323,"end":328},"obj":"NN"},{"id":"T6863","span":{"begin":313,"end":322},"obj":"JJ"},{"id":"T6862","span":{"begin":309,"end":312},"obj":"DT"},{"id":"T6861","span":{"begin":306,"end":308},"obj":"IN"},{"id":"T6860","span":{"begin":293,"end":305},"obj":"NN"},{"id":"T6859","span":{"begin":287,"end":292},"obj":"IN"},{"id":"T6858","span":{"begin":281,"end":285},"obj":"NN"},{"id":"T6857","span":{"begin":272,"end":280},"obj":"NN"},{"id":"T6856","span":{"begin":261,"end":271},"obj":"NN"},{"id":"T6855","span":{"begin":253,"end":260},"obj":"NN"},{"id":"T6854","span":{"begin":249,"end":252},"obj":"DT"},{"id":"T6853","span":{"begin":246,"end":248},"obj":"TO"},{"id":"T6852","span":{"begin":239,"end":245},"obj":"VB"},{"id":"T6851","span":{"begin":237,"end":238},"obj":"-RRB-"},{"id":"T6850","span":{"begin":233,"end":237},"obj":"NN"},{"id":"T6849","span":{"begin":227,"end":232},"obj":"NN"},{"id":"T6848","span":{"begin":213,"end":226},"obj":"NN"},{"id":"T6847","span":{"begin":209,"end":212},"obj":"DT"},{"id":"T6846","span":{"begin":206,"end":208},"obj":"TO"},{"id":"T6845","span":{"begin":197,"end":205},"obj":"JJ"},{"id":"T6844","span":{"begin":194,"end":196},"obj":"NN"},{"id":"T6843","span":{"begin":191,"end":193},"obj":"CD"},{"id":"T6842","span":{"begin":189,"end":190},"obj":"SYM"},{"id":"T6841","span":{"begin":186,"end":188},"obj":"TO"},{"id":"T6840","span":{"begin":181,"end":185},"obj":"CD"},{"id":"T6839","span":{"begin":180,"end":181},"obj":"-LRB-"},{"id":"T6838","span":{"begin":175,"end":179},"obj":"NN"},{"id":"T6837","span":{"begin":173,"end":174},"obj":"NN"},{"id":"T6836","span":{"begin":169,"end":172},"obj":"CC"},{"id":"T6835","span":{"begin":167,"end":168},"obj":"-COMMA-"},{"id":"T6834","span":{"begin":166,"end":167},"obj":"NN"},{"id":"T6833","span":{"begin":164,"end":165},"obj":"-COMMA-"},{"id":"T6832","span":{"begin":163,"end":164},"obj":"NN"},{"id":"T6831","span":{"begin":155,"end":162},"obj":"NN"},{"id":"T6830","span":{"begin":149,"end":154},"obj":"JJ"},{"id":"T6829","span":{"begin":138,"end":148},"obj":"VB"},{"id":"T6828","span":{"begin":129,"end":137},"obj":"NN"},{"id":"T6827","span":{"begin":120,"end":128},"obj":"NN"},{"id":"T6826","span":{"begin":108,"end":119},"obj":"VB"},{"id":"T6825","span":{"begin":102,"end":107},"obj":"RB"},{"id":"T6824","span":{"begin":99,"end":101},"obj":"PRP"},{"id":"T6823","span":{"begin":97,"end":98},"obj":"-COMMA-"},{"id":"T6822","span":{"begin":89,"end":97},"obj":"NN"},{"id":"T6821","span":{"begin":85,"end":88},"obj":"NN"},{"id":"T6820","span":{"begin":79,"end":84},"obj":"NN"},{"id":"T6819","span":{"begin":62,"end":78},"obj":"JJ"},{"id":"T6818","span":{"begin":59,"end":61},"obj":"IN"},{"id":"T6817","span":{"begin":47,"end":58},"obj":"NN"},{"id":"T6816","span":{"begin":43,"end":46},"obj":"NN"},{"id":"T6815","span":{"begin":40,"end":42},"obj":"IN"},{"id":"T6814","span":{"begin":33,"end":39},"obj":"NN"},{"id":"T6813","span":{"begin":22,"end":32},"obj":"JJ"},{"id":"T6812","span":{"begin":18,"end":21},"obj":"DT"},{"id":"T6811","span":{"begin":10,"end":17},"obj":"VB"},{"id":"T6810","span":{"begin":7,"end":9},"obj":"TO"},{"id":"T6809","span":{"begin":5,"end":6},"obj":"NN"},{"id":"T6808","span":{"begin":1,"end":4},"obj":"CC"}],"relations":[{"id":"R5444","pred":"arg2Of","subj":"T6809","obj":"T6808"},{"id":"R5445","pred":"arg1Of","subj":"T6811","obj":"T6810"},{"id":"R5446","pred":"arg2Of","subj":"T6814","obj":"T6811"},{"id":"R5447","pred":"arg1Of","subj":"T6814","obj":"T6812"},{"id":"R5448","pred":"arg1Of","subj":"T6814","obj":"T6813"},{"id":"R5449","pred":"arg1Of","subj":"T6814","obj":"T6815"},{"id":"R5450","pred":"arg1Of","subj":"T6814","obj":"T6818"},{"id":"R5451","pred":"arg2Of","subj":"T6817","obj":"T6815"},{"id":"R5452","pred":"arg1Of","subj":"T6817","obj":"T6816"},{"id":"R5453","pred":"arg2Of","subj":"T6822","obj":"T6818"},{"id":"R5454","pred":"arg1Of","subj":"T6822","obj":"T6819"},{"id":"R5455","pred":"arg1Of","subj":"T6822","obj":"T6820"},{"id":"R5456","pred":"arg1Of","subj":"T6822","obj":"T6821"},{"id":"R5457","pred":"arg1Of","subj":"T6824","obj":"T6811"},{"id":"R5458","pred":"arg1Of","subj":"T6824","obj":"T6826"},{"id":"R5459","pred":"modOf","subj":"T6826","obj":"T6810"},{"id":"R5460","pred":"arg1Of","subj":"T6826","obj":"T6823"},{"id":"R5461","pred":"arg1Of","subj":"T6826","obj":"T6825"},{"id":"R5462","pred":"arg2Of","subj":"T6828","obj":"T6826"},{"id":"R5463","pred":"arg1Of","subj":"T6828","obj":"T6827"},{"id":"R5464","pred":"arg1Of","subj":"T6828","obj":"T6829"},{"id":"R5465","pred":"arg1Of","subj":"T6832","obj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and E\nTo compare the functional impact of MTb stimulation on subtype-specific HIV-1 LTR activity, we first constructed reporter plasmids containing viral subtype B, C, and E LTRs (−208 to + 64 nt relative to the transcription start site) linked to the firefly luciferase reporter gene. After transfection of the monocytic THP-1 cell line with these plasmids, cells wer"}

    bionlp-st-ge-2016-test-proteins

    {"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T6776","span":{"begin":261,"end":271},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":" and E\nTo compare the functional impact of MTb stimulation on subtype-specific HIV-1 LTR activity, we first constructed reporter plasmids containing viral subtype B, C, and E LTRs (−208 to + 64 nt relative to the transcription start site) linked to the firefly luciferase reporter gene. After transfection of the monocytic THP-1 cell line with these plasmids, cells wer"}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T6994","span":{"begin":261,"end":271},"obj":"http://www.uniprot.org/uniprot/P08659"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":" and E\nTo compare the functional impact of MTb stimulation on subtype-specific HIV-1 LTR activity, we first constructed reporter plasmids containing viral subtype B, C, and E LTRs (−208 to + 64 nt relative to the transcription start site) linked to the firefly luciferase reporter gene. After transfection of the monocytic THP-1 cell line with these plasmids, cells wer"}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T6779","span":{"begin":213,"end":226},"obj":"http://purl.obolibrary.org/obo/GO_0006351"}],"text":" and E\nTo compare the functional impact of MTb stimulation on subtype-specific HIV-1 LTR activity, we first constructed reporter plasmids containing viral subtype B, C, and E LTRs (−208 to + 64 nt relative to the transcription start site) linked to the firefly luciferase reporter gene. After transfection of the monocytic THP-1 cell line with these plasmids, cells wer"}

    GO-CC

    {"project":"GO-CC","denotations":[{"id":"T6791","span":{"begin":329,"end":333},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":" and E\nTo compare the functional impact of MTb stimulation on subtype-specific HIV-1 LTR activity, we first constructed reporter plasmids containing viral subtype B, C, and E LTRs (−208 to + 64 nt relative to the transcription start site) linked to the firefly luciferase reporter gene. After transfection of the monocytic THP-1 cell line with these plasmids, cells wer"}

    sentences

    {"project":"sentences","denotations":[{"id":"T6767","span":{"begin":7,"end":286},"obj":"Sentence"},{"id":"T100","span":{"begin":7,"end":286},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":" and E\nTo compare the functional impact of MTb stimulation on subtype-specific HIV-1 LTR activity, we first constructed reporter plasmids containing viral subtype B, C, and E LTRs (−208 to + 64 nt relative to the transcription start site) linked to the firefly luciferase reporter gene. After transfection of the monocytic THP-1 cell line with these plasmids, cells wer"}

    simple1

    {"project":"simple1","denotations":[{"id":"T6793","span":{"begin":261,"end":271},"obj":"Protein"}],"text":" and E\nTo compare the functional impact of MTb stimulation on subtype-specific HIV-1 LTR activity, we first constructed reporter plasmids containing viral subtype B, C, and E LTRs (−208 to + 64 nt relative to the transcription start site) linked to the firefly luciferase reporter gene. After transfection of the monocytic THP-1 cell line with these plasmids, cells wer"}

    BioNLP16_DUT

    {"project":"BioNLP16_DUT","denotations":[{"id":"T7235","span":{"begin":261,"end":271},"obj":"Protein"}],"text":" and E\nTo compare the functional impact of MTb stimulation on subtype-specific HIV-1 LTR activity, we first constructed reporter plasmids containing viral subtype B, C, and E LTRs (−208 to + 64 nt relative to the transcription start site) linked to the firefly luciferase reporter gene. After transfection of the monocytic THP-1 cell line with these plasmids, cells wer"}

    BioNLP16_Messiy

    {"project":"BioNLP16_Messiy","denotations":[{"id":"T7004","span":{"begin":261,"end":271},"obj":"Protein"}],"text":" and E\nTo compare the functional impact of MTb stimulation on subtype-specific HIV-1 LTR activity, we first constructed reporter plasmids containing viral subtype B, C, and E LTRs (−208 to + 64 nt relative to the transcription start site) linked to the firefly luciferase reporter gene. After transfection of the monocytic THP-1 cell line with these plasmids, cells wer"}

    DLUT931

    {"project":"DLUT931","denotations":[{"id":"T7000","span":{"begin":261,"end":271},"obj":"Protein"}],"text":" and E\nTo compare the functional impact of MTb stimulation on subtype-specific HIV-1 LTR activity, we first constructed reporter plasmids containing viral subtype B, C, and E LTRs (−208 to + 64 nt relative to the transcription start site) linked to the firefly luciferase reporter gene. After transfection of the monocytic THP-1 cell line with these plasmids, cells wer"}

    bionlp-st-ge-2016-test-ihmc

    {"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T7251","span":{"begin":40,"end":58},"obj":"Positive_regulation"},{"id":"T7250","span":{"begin":239,"end":285},"obj":"Binding"},{"id":"T7249","span":{"begin":43,"end":46},"obj":"Protein"},{"id":"T7242","span":{"begin":246,"end":285},"obj":"Protein"},{"id":"T7239","span":{"begin":253,"end":271},"obj":"Protein"}],"relations":[{"id":"R5840","pred":"themeOf","subj":"T7242","obj":"T7250"},{"id":"R5841","pred":"themeOf","subj":"T7249","obj":"T7251"}],"text":" and E\nTo compare the functional impact of MTb stimulation on subtype-specific HIV-1 LTR activity, we first constructed reporter plasmids containing viral subtype B, C, and E LTRs (−208 to + 64 nt relative to the transcription start site) linked to the firefly luciferase reporter gene. After transfection of the monocytic THP-1 cell line with these plasmids, cells wer"}

    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T7109","span":{"begin":360,"end":365},"obj":"NNS"},{"id":"T7108","span":{"begin":358,"end":359},"obj":","},{"id":"T7107","span":{"begin":350,"end":358},"obj":"NNS"},{"id":"T7106","span":{"begin":344,"end":349},"obj":"DT"},{"id":"T7105","span":{"begin":339,"end":343},"obj":"IN"},{"id":"T7104","span":{"begin":334,"end":338},"obj":"NN"},{"id":"T7103","span":{"begin":329,"end":333},"obj":"NN"},{"id":"T7102","span":{"begin":323,"end":328},"obj":"CD"},{"id":"T7101","span":{"begin":313,"end":322},"obj":"JJ"},{"id":"T7100","span":{"begin":309,"end":312},"obj":"DT"},{"id":"T7099","span":{"begin":306,"end":308},"obj":"IN"},{"id":"T7098","span":{"begin":293,"end":305},"obj":"NN"},{"id":"T7097","span":{"begin":287,"end":292},"obj":"IN"},{"id":"T7096","span":{"begin":285,"end":286},"obj":"."},{"id":"T7095","span":{"begin":281,"end":285},"obj":"NN"},{"id":"T7094","span":{"begin":272,"end":280},"obj":"NN"},{"id":"T7093","span":{"begin":261,"end":271},"obj":"NN"},{"id":"T7092","span":{"begin":253,"end":260},"obj":"JJ"},{"id":"T7091","span":{"begin":249,"end":252},"obj":"DT"},{"id":"T7090","span":{"begin":246,"end":248},"obj":"TO"},{"id":"T7089","span":{"begin":239,"end":245},"obj":"VBN"},{"id":"T7088","span":{"begin":237,"end":238},"obj":"-RRB-"},{"id":"T7087","span":{"begin":233,"end":237},"obj":"NN"},{"id":"T7086","span":{"begin":227,"end":232},"obj":"VB"},{"id":"T7085","span":{"begin":213,"end":226},"obj":"NN"},{"id":"T7084","span":{"begin":209,"end":212},"obj":"DT"},{"id":"T7083","span":{"begin":206,"end":208},"obj":"TO"},{"id":"T7082","span":{"begin":197,"end":205},"obj":"JJ"},{"id":"T7081","span":{"begin":194,"end":196},"obj":"NN"},{"id":"T7080","span":{"begin":191,"end":193},"obj":"CD"},{"id":"T7079","span":{"begin":189,"end":190},"obj":"CD"},{"id":"T7078","span":{"begin":186,"end":188},"obj":"TO"},{"id":"T7077","span":{"begin":182,"end":185},"obj":"CD"},{"id":"T7076","span":{"begin":181,"end":182},"obj":"FW"},{"id":"T7075","span":{"begin":180,"end":181},"obj":"-LRB-"},{"id":"T7074","span":{"begin":175,"end":179},"obj":"NNP"},{"id":"T7073","span":{"begin":173,"end":174},"obj":"NNP"},{"id":"T7072","span":{"begin":169,"end":172},"obj":"CC"},{"id":"T7071","span":{"begin":167,"end":168},"obj":","},{"id":"T7070","span":{"begin":166,"end":167},"obj":"NNP"},{"id":"T7069","span":{"begin":164,"end":165},"obj":","},{"id":"T7068","span":{"begin":163,"end":164},"obj":"NNP"},{"id":"T7067","span":{"begin":155,"end":162},"obj":"NN"},{"id":"T7066","span":{"begin":149,"end":154},"obj":"JJ"},{"id":"T7065","span":{"begin":138,"end":148},"obj":"VBG"},{"id":"T7064","span":{"begin":129,"end":137},"obj":"NNS"},{"id":"T7063","span":{"begin":120,"end":128},"obj":"NN"},{"id":"T7062","span":{"begin":108,"end":119},"obj":"VBD"},{"id":"T7061","span":{"begin":102,"end":107},"obj":"RB"},{"id":"T7060","span":{"begin":99,"end":101},"obj":"PRP"},{"id":"T7059","span":{"begin":97,"end":98},"obj":","},{"id":"T7058","span":{"begin":89,"end":97},"obj":"NN"},{"id":"T7057","span":{"begin":85,"end":88},"obj":"NNP"},{"id":"T7056","span":{"begin":79,"end":84},"obj":"NNP"},{"id":"T7055","span":{"begin":62,"end":78},"obj":"JJ"},{"id":"T7054","span":{"begin":59,"end":61},"obj":"IN"},{"id":"T7053","span":{"begin":47,"end":58},"obj":"NN"},{"id":"T7052","span":{"begin":43,"end":46},"obj":"NNP"},{"id":"T7051","span":{"begin":40,"end":42},"obj":"IN"},{"id":"T7050","span":{"begin":33,"end":39},"obj":"NN"},{"id":"T7049","span":{"begin":22,"end":32},"obj":"JJ"},{"id":"T7048","span":{"begin":18,"end":21},"obj":"DT"},{"id":"T7047","span":{"begin":10,"end":17},"obj":"VB"},{"id":"T7046","span":{"begin":7,"end":9},"obj":"TO"},{"id":"T7045","span":{"begin":5,"end":6},"obj":"NNP"},{"id":"T7044","span":{"begin":1,"end":4},"obj":"CC"}],"relations":[{"id":"R5650","pred":"aux","subj":"T7046","obj":"T7047"},{"id":"R5652","pred":"det","subj":"T7048","obj":"T7050"},{"id":"R5653","pred":"amod","subj":"T7049","obj":"T7050"},{"id":"R5654","pred":"dobj","subj":"T7050","obj":"T7047"},{"id":"R5655","pred":"prep","subj":"T7051","obj":"T7050"},{"id":"R5656","pred":"compound","subj":"T7052","obj":"T7053"},{"id":"R5657","pred":"pobj","subj":"T7053","obj":"T7051"},{"id":"R5658","pred":"prep","subj":"T7054","obj":"T7050"},{"id":"R5659","pred":"amod","subj":"T7055","obj":"T7058"},{"id":"R5660","pred":"compound","subj":"T7056","obj":"T7057"},{"id":"R5661","pred":"compound","subj":"T7057","obj":"T7058"},{"id":"R5662","pred":"pobj","subj":"T7058","obj":"T7054"},{"id":"R5663","pred":"punct","subj":"T7059","obj":"T7062"},{"id":"R5664","pred":"nsubj","subj":"T7060","obj":"T7062"},{"id":"R5665","pred":"advmod","subj":"T7061","obj":"T7062"},{"id":"R5666","pred":"parataxis","subj":"T7062","obj":"T7089"},{"id":"R5667","pred":"compound","subj":"T7063","obj":"T7064"},{"id":"R5668","pred":"dobj","subj":"T7064","obj":"T7062"},{"id":"R5669","pred":"acl","subj":"T7065","obj":"T7064"},{"id":"R5670","pred":"amod","subj":"T7066","obj":"T7068"},{"id":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and E\nTo compare the functional impact of MTb stimulation on subtype-specific HIV-1 LTR activity, we first constructed reporter plasmids containing viral subtype B, C, and E LTRs (−208 to + 64 nt relative to the transcription start site) linked to the firefly luciferase reporter gene. After transfection of the monocytic THP-1 cell line with these plasmids, cells wer"}

    bionlp-st-ge-2016-test-tees

    {"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T7015","span":{"begin":261,"end":285},"obj":"Protein"},{"id":"T7014","span":{"begin":173,"end":179},"obj":"Protein"},{"id":"T7013","span":{"begin":79,"end":88},"obj":"Protein"},{"id":"T7012","span":{"begin":43,"end":46},"obj":"Protein"}],"text":" and E\nTo compare the functional impact of MTb stimulation on subtype-specific HIV-1 LTR activity, we first constructed reporter plasmids containing viral subtype B, C, and E LTRs (−208 to + 64 nt relative to the transcription start site) linked to the firefly luciferase reporter gene. After transfection of the monocytic THP-1 cell line with these plasmids, cells wer"}

    testone

    {"project":"testone","denotations":[{"id":"T6757","span":{"begin":261,"end":271},"obj":"Protein"}],"text":" and E\nTo compare the functional impact of MTb stimulation on subtype-specific HIV-1 LTR activity, we first constructed reporter plasmids containing viral subtype B, C, and E LTRs (−208 to + 64 nt relative to the transcription start site) linked to the firefly luciferase reporter gene. After transfection of the monocytic THP-1 cell line with these plasmids, cells wer"}

    test3

    {"project":"test3","denotations":[{"id":"T6763","span":{"begin":261,"end":271},"obj":"Protein"},{"id":"T6760","span":{"begin":261,"end":271},"obj":"Protein"}],"text":" and E\nTo compare the functional impact of MTb stimulation on subtype-specific HIV-1 LTR activity, we first constructed reporter plasmids containing viral subtype B, C, and E LTRs (−208 to + 64 nt relative to the transcription start site) linked to the firefly luciferase reporter gene. After transfection of the monocytic THP-1 cell line with these plasmids, cells wer"}