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PMC:3320587 / 15399-15768 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T6871 360-365 NN denotes cells
T6870 358-359 -COMMA- denotes ,
T6869 350-358 NN denotes plasmids
T6868 344-349 DT denotes these
T6867 339-343 IN denotes with
T6866 334-338 NN denotes line
T6865 329-333 NN denotes cell
T6864 323-328 NN denotes THP-1
T6863 313-322 JJ denotes monocytic
T6862 309-312 DT denotes the
T6861 306-308 IN denotes of
T6860 293-305 NN denotes transfection
T6859 287-292 IN denotes After
T6858 281-285 NN denotes gene
T6857 272-280 NN denotes reporter
T6856 261-271 NN denotes luciferase
T6855 253-260 NN denotes firefly
T6854 249-252 DT denotes the
T6853 246-248 TO denotes to
T6852 239-245 VB denotes linked
T6851 237-238 -RRB- denotes )
T6850 233-237 NN denotes site
T6849 227-232 NN denotes start
T6848 213-226 NN denotes transcription
T6847 209-212 DT denotes the
T6846 206-208 TO denotes to
T6845 197-205 JJ denotes relative
T6844 194-196 NN denotes nt
T6843 191-193 CD denotes 64
T6842 189-190 SYM denotes +
T6841 186-188 TO denotes to
T6840 181-185 CD denotes −208
T6839 180-181 -LRB- denotes (
T6838 175-179 NN denotes LTRs
T6837 173-174 NN denotes E
T6836 169-172 CC denotes and
T6835 167-168 -COMMA- denotes ,
T6834 166-167 NN denotes C
T6833 164-165 -COMMA- denotes ,
T6832 163-164 NN denotes B
T6831 155-162 NN denotes subtype
T6830 149-154 JJ denotes viral
T6829 138-148 VB denotes containing
T6828 129-137 NN denotes plasmids
T6827 120-128 NN denotes reporter
T6826 108-119 VB denotes constructed
T6825 102-107 RB denotes first
T6824 99-101 PRP denotes we
T6823 97-98 -COMMA- denotes ,
T6822 89-97 NN denotes activity
T6821 85-88 NN denotes LTR
T6820 79-84 NN denotes HIV-1
T6819 62-78 JJ denotes subtype-specific
T6818 59-61 IN denotes on
T6817 47-58 NN denotes stimulation
T6816 43-46 NN denotes MTb
T6815 40-42 IN denotes of
T6814 33-39 NN denotes impact
T6813 22-32 JJ denotes functional
T6812 18-21 DT denotes the
T6811 10-17 VB denotes compare
T6810 7-9 TO denotes To
T6809 5-6 NN denotes E
T6808 1-4 CC denotes and
R5444 T6809 T6808 arg2Of E,and
R5445 T6811 T6810 arg1Of compare,To
R5446 T6814 T6811 arg2Of impact,compare
R5447 T6814 T6812 arg1Of impact,the
R5448 T6814 T6813 arg1Of impact,functional
R5449 T6814 T6815 arg1Of impact,of
R5450 T6814 T6818 arg1Of impact,on
R5451 T6817 T6815 arg2Of stimulation,of
R5452 T6817 T6816 arg1Of stimulation,MTb
R5453 T6822 T6818 arg2Of activity,on
R5454 T6822 T6819 arg1Of activity,subtype-specific
R5455 T6822 T6820 arg1Of activity,HIV-1
R5456 T6822 T6821 arg1Of activity,LTR
R5457 T6824 T6811 arg1Of we,compare
R5458 T6824 T6826 arg1Of we,constructed
R5459 T6826 T6810 modOf constructed,To
R5460 T6826 T6823 arg1Of constructed,","
R5461 T6826 T6825 arg1Of constructed,first
R5462 T6828 T6826 arg2Of plasmids,constructed
R5463 T6828 T6827 arg1Of plasmids,reporter
R5464 T6828 T6829 arg1Of plasmids,containing
R5465 T6832 T6833 arg1Of B,","
R5466 T6833 T6836 arg1Of ",",and
R5467 T6834 T6833 arg2Of C,","
R5468 T6836 T6835 arg1Of and,","
R5469 T6837 T6836 arg2Of E,and
R5470 T6838 T6829 arg2Of LTRs,containing
R5471 T6838 T6830 arg1Of LTRs,viral
R5472 T6838 T6831 arg1Of LTRs,subtype
R5473 T6838 T6832 arg1Of LTRs,B
R5474 T6838 T6834 arg1Of LTRs,C
R5475 T6838 T6837 arg1Of LTRs,E
R5476 T6838 T6839 arg1Of LTRs,(
R5477 T6838 T6852 arg2Of LTRs,linked
R5478 T6840 T6839 arg2Of −208,(
R5479 T6840 T6841 arg1Of −208,to
R5480 T6840 T6845 arg1Of −208,relative
R5481 T6843 T6842 arg1Of 64,+
R5482 T6844 T6841 arg2Of nt,to
R5483 T6844 T6843 arg1Of nt,64
R5484 T6845 T6846 arg1Of relative,to
R5485 T6850 T6846 arg2Of site,to
R5486 T6850 T6847 arg1Of site,the
R5487 T6850 T6848 arg1Of site,transcription
R5488 T6850 T6849 arg1Of site,start
R5489 T6851 T6839 arg3Of ),(
R5490 T6852 T6853 arg1Of linked,to
R5491 T6858 T6853 arg2Of gene,to
R5492 T6858 T6854 arg1Of gene,the
R5493 T6858 T6855 arg1Of gene,firefly
R5494 T6858 T6856 arg1Of gene,luciferase
R5495 T6858 T6857 arg1Of gene,reporter
R5496 T6860 T6859 arg2Of transfection,After
R5497 T6860 T6861 arg1Of transfection,of
R5498 T6866 T6861 arg2Of line,of
R5499 T6866 T6862 arg1Of line,the
R5500 T6866 T6863 arg1Of line,monocytic
R5501 T6866 T6864 arg1Of line,THP-1
R5502 T6866 T6865 arg1Of line,cell
R5503 T6866 T6867 arg1Of line,with
R5504 T6869 T6867 arg2Of plasmids,with
R5505 T6869 T6868 arg1Of plasmids,these

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T6776 261-271 Protein denotes luciferase

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T6994 261-271 http://www.uniprot.org/uniprot/P08659 denotes luciferase

GO-BP

Id Subject Object Predicate Lexical cue
T6779 213-226 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

GO-CC

Id Subject Object Predicate Lexical cue
T6791 329-333 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T6767 7-286 Sentence denotes To compare the functional impact of MTb stimulation on subtype-specific HIV-1 LTR activity, we first constructed reporter plasmids containing viral subtype B, C, and E LTRs (−208 to + 64 nt relative to the transcription start site) linked to the firefly luciferase reporter gene.
T100 7-286 Sentence denotes To compare the functional impact of MTb stimulation on subtype-specific HIV-1 LTR activity, we first constructed reporter plasmids containing viral subtype B, C, and E LTRs (−208 to + 64 nt relative to the transcription start site) linked to the firefly luciferase reporter gene.

simple1

Id Subject Object Predicate Lexical cue
T6793 261-271 Protein denotes luciferase

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T7235 261-271 Protein denotes luciferase

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T7004 261-271 Protein denotes luciferase

DLUT931

Id Subject Object Predicate Lexical cue
T7000 261-271 Protein denotes luciferase

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T7251 40-58 Positive_regulation denotes of MTb stimulation
T7250 239-285 Binding denotes linked to the firefly luciferase reporter gene
T7249 43-46 Protein denotes MTb
T7242 246-285 Protein denotes to the firefly luciferase reporter gene
T7239 253-271 Protein denotes firefly luciferase
R5840 T7242 T7250 themeOf to the firefly luciferase reporter gene,linked to the firefly luciferase reporter gene
R5841 T7249 T7251 themeOf MTb,of MTb stimulation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T7109 360-365 NNS denotes cells
T7108 358-359 , denotes ,
T7107 350-358 NNS denotes plasmids
T7106 344-349 DT denotes these
T7105 339-343 IN denotes with
T7104 334-338 NN denotes line
T7103 329-333 NN denotes cell
T7102 323-328 CD denotes THP-1
T7101 313-322 JJ denotes monocytic
T7100 309-312 DT denotes the
T7099 306-308 IN denotes of
T7098 293-305 NN denotes transfection
T7097 287-292 IN denotes After
T7096 285-286 . denotes .
T7095 281-285 NN denotes gene
T7094 272-280 NN denotes reporter
T7093 261-271 NN denotes luciferase
T7092 253-260 JJ denotes firefly
T7091 249-252 DT denotes the
T7090 246-248 TO denotes to
T7089 239-245 VBN denotes linked
T7088 237-238 -RRB- denotes )
T7087 233-237 NN denotes site
T7086 227-232 VB denotes start
T7085 213-226 NN denotes transcription
T7084 209-212 DT denotes the
T7083 206-208 TO denotes to
T7082 197-205 JJ denotes relative
T7081 194-196 NN denotes nt
T7080 191-193 CD denotes 64
T7079 189-190 CD denotes +
T7078 186-188 TO denotes to
T7077 182-185 CD denotes 208
T7076 181-182 FW denotes −
T7075 180-181 -LRB- denotes (
T7074 175-179 NNP denotes LTRs
T7073 173-174 NNP denotes E
T7072 169-172 CC denotes and
T7071 167-168 , denotes ,
T7070 166-167 NNP denotes C
T7069 164-165 , denotes ,
T7068 163-164 NNP denotes B
T7067 155-162 NN denotes subtype
T7066 149-154 JJ denotes viral
T7065 138-148 VBG denotes containing
T7064 129-137 NNS denotes plasmids
T7063 120-128 NN denotes reporter
T7062 108-119 VBD denotes constructed
T7061 102-107 RB denotes first
T7060 99-101 PRP denotes we
T7059 97-98 , denotes ,
T7058 89-97 NN denotes activity
T7057 85-88 NNP denotes LTR
T7056 79-84 NNP denotes HIV-1
T7055 62-78 JJ denotes subtype-specific
T7054 59-61 IN denotes on
T7053 47-58 NN denotes stimulation
T7052 43-46 NNP denotes MTb
T7051 40-42 IN denotes of
T7050 33-39 NN denotes impact
T7049 22-32 JJ denotes functional
T7048 18-21 DT denotes the
T7047 10-17 VB denotes compare
T7046 7-9 TO denotes To
T7045 5-6 NNP denotes E
T7044 1-4 CC denotes and
R5650 T7046 T7047 aux To,compare
R5652 T7048 T7050 det the,impact
R5653 T7049 T7050 amod functional,impact
R5654 T7050 T7047 dobj impact,compare
R5655 T7051 T7050 prep of,impact
R5656 T7052 T7053 compound MTb,stimulation
R5657 T7053 T7051 pobj stimulation,of
R5658 T7054 T7050 prep on,impact
R5659 T7055 T7058 amod subtype-specific,activity
R5660 T7056 T7057 compound HIV-1,LTR
R5661 T7057 T7058 compound LTR,activity
R5662 T7058 T7054 pobj activity,on
R5663 T7059 T7062 punct ",",constructed
R5664 T7060 T7062 nsubj we,constructed
R5665 T7061 T7062 advmod first,constructed
R5666 T7062 T7089 parataxis constructed,linked
R5667 T7063 T7064 compound reporter,plasmids
R5668 T7064 T7062 dobj plasmids,constructed
R5669 T7065 T7064 acl containing,plasmids
R5670 T7066 T7068 amod viral,B
R5671 T7067 T7068 compound subtype,B
R5672 T7068 T7065 dobj B,containing
R5673 T7069 T7068 punct ",",B
R5674 T7070 T7068 conj C,B
R5675 T7071 T7070 punct ",",C
R5676 T7072 T7070 cc and,C
R5677 T7073 T7074 compound E,LTRs
R5678 T7074 T7070 conj LTRs,C
R5679 T7075 T7074 punct (,LTRs
R5680 T7076 T7074 nmod −,LTRs
R5681 T7077 T7079 quantmod 208,+
R5682 T7078 T7079 quantmod to,+
R5683 T7079 T7074 appos +,LTRs
R5684 T7080 T7081 nummod 64,nt
R5685 T7081 T7086 dep nt,start
R5686 T7082 T7081 amod relative,nt
R5687 T7083 T7086 aux to,start
R5688 T7084 T7085 det the,transcription
R5689 T7085 T7086 nsubj transcription,start
R5690 T7086 T7079 xcomp start,+
R5691 T7087 T7086 dobj site,start
R5692 T7088 T7062 punct ),constructed
R5693 T7089 T7089 ROOT linked,linked
R5694 T7090 T7089 prep to,linked
R5695 T7091 T7095 det the,gene
R5696 T7092 T7095 amod firefly,gene
R5697 T7093 T7095 compound luciferase,gene
R5698 T7094 T7095 compound reporter,gene
R5699 T7095 T7090 pobj gene,to
R5702 T7098 T7097 pobj transfection,After
R5703 T7099 T7098 prep of,transfection
R5704 T7100 T7104 det the,line
R5705 T7101 T7104 amod monocytic,line
R5706 T7102 T7104 nummod THP-1,line
R5707 T7103 T7104 compound cell,line
R5708 T7104 T7099 pobj line,of
R5709 T7105 T7104 prep with,line
R5710 T7106 T7107 det these,plasmids
R5711 T7107 T7105 pobj plasmids,with

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T7015 261-285 Protein denotes luciferase reporter gene
T7014 173-179 Protein denotes E LTRs
T7013 79-88 Protein denotes HIV-1 LTR
T7012 43-46 Protein denotes MTb

testone

Id Subject Object Predicate Lexical cue
T6757 261-271 Protein denotes luciferase

test3

Id Subject Object Predicate Lexical cue
T6763 261-271 Protein denotes luciferase
T6760 261-271 Protein denotes luciferase