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PMC:3320587 / 14767-15102 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T6592 328-334 NN denotes values
T6591 319-327 JJ denotes relative
T6590 316-318 IN denotes as
T6589 306-315 VB denotes expressed
T6588 302-305 CC denotes and
T6587 294-301 NN denotes control
T6586 285-293 JJ denotes internal
T6585 282-284 DT denotes an
T6584 279-281 IN denotes as
T6583 274-278 NN denotes mRNA
T6582 266-273 NN denotes β-actin
T6581 260-265 VB denotes using
T6580 249-259 VB denotes normalized
T6579 244-248 VB denotes were
T6578 236-243 NN denotes results
T6577 232-235 DT denotes The
T6576 227-230 NN denotes min
T6575 225-226 CD denotes 1
T6574 221-224 IN denotes for
T6573 216-220 NN denotes 60°C
T6572 212-215 CC denotes and
T6571 208-211 NN denotes sec
T6570 205-207 CD denotes 15
T6569 201-204 IN denotes for
T6568 196-200 NN denotes 95°C
T6567 193-195 IN denotes of
T6566 186-192 NN denotes cycles
T6565 183-185 CD denotes 40
T6564 180-182 IN denotes by
T6563 171-179 VB denotes followed
T6546 51-62 JJ denotes Green-based
T6545 46-50 NN denotes SYBR
T6544 43-45 IN denotes by
T6543 32-42 VB denotes determined
T6542 27-31 VB denotes were
T6541 20-26 NN denotes levels
T6540 9-19 NN denotes expression
T6539 4-8 NN denotes mRNA
T6538 0-3 DT denotes The
T6562 167-170 NN denotes min
T6561 164-166 CD denotes 10
T6560 160-163 IN denotes for
T6559 155-159 NN denotes 95°C
T6558 150-154 VB denotes were
T6557 139-149 NN denotes conditions
T6556 130-138 NN denotes reaction
T6555 126-129 DT denotes The
T6554 123-124 -RRB- denotes )
T6553 98-123 NN denotes www.appliedbiosystems.com
T6552 96-97 -COMMA- denotes ,
T6551 86-96 NNP denotes Biosystems
T6550 78-85 NNP denotes Applied
T6549 77-78 -LRB- denotes (
T6548 73-76 NN denotes PCR
T6547 63-72 JJ denotes real-time
R5233 T6541 T6538 arg1Of levels,The
R5234 T6541 T6539 arg1Of levels,mRNA
R5235 T6541 T6540 arg1Of levels,expression
R5236 T6541 T6542 arg1Of levels,were
R5237 T6541 T6543 arg2Of levels,determined
R5238 T6543 T6542 arg2Of determined,were
R5239 T6543 T6544 arg1Of determined,by
R5240 T6548 T6544 arg2Of PCR,by
R5241 T6548 T6545 arg1Of PCR,SYBR
R5242 T6548 T6546 arg1Of PCR,Green-based
R5243 T6548 T6547 arg1Of PCR,real-time
R5244 T6548 T6549 arg1Of PCR,(
R5245 T6551 T6549 arg2Of Biosystems,(
R5246 T6551 T6550 arg1Of Biosystems,Applied
R5247 T6551 T6552 arg1Of Biosystems,","
R5248 T6553 T6552 arg2Of www.appliedbiosystems.com,","
R5249 T6554 T6549 arg3Of ),(
R5250 T6557 T6555 arg1Of conditions,The
R5251 T6557 T6556 arg1Of conditions,reaction
R5252 T6557 T6558 arg1Of conditions,were
R5253 T6558 T6560 arg1Of were,for
R5254 T6558 T6563 modOf were,followed
R5255 T6559 T6558 arg2Of 95°C,were
R5256 T6562 T6560 arg2Of min,for
R5257 T6562 T6561 arg1Of min,10
R5258 T6566 T6563 arg1Of cycles,followed
R5259 T6566 T6564 arg2Of cycles,by
R5260 T6566 T6565 arg1Of cycles,40
R5261 T6566 T6567 arg1Of cycles,of
R5262 T6568 T6567 arg2Of 95°C,of
R5263 T6568 T6569 arg1Of 95°C,for
R5265 T6571 T6572 arg1Of sec,and
R5266 T6572 T6569 arg2Of and,for
R5267 T6572 T6570 arg1Of and,15
R5268 T6573 T6572 arg2Of 60°C,and
R5286 T6592 T6590 arg2Of values,as
R5287 T6592 T6591 arg1Of values,relative
R5264 T6568 T6574 arg1Of 95°C,for
R5269 T6576 T6574 arg2Of min,for
R5270 T6576 T6575 arg1Of min,1
R5271 T6578 T6577 arg1Of results,The
R5272 T6578 T6579 arg1Of results,were
R5273 T6578 T6580 arg2Of results,normalized
R5274 T6578 T6589 arg2Of results,expressed
R5275 T6580 T6588 arg1Of normalized,and
R5276 T6581 T6580 arg3Of using,normalized
R5277 T6581 T6584 arg1Of using,as
R5278 T6583 T6581 arg2Of mRNA,using
R5279 T6583 T6582 arg1Of mRNA,β-actin
R5280 T6587 T6584 arg2Of control,as
R5281 T6587 T6585 arg1Of control,an
R5282 T6587 T6586 arg1Of control,internal
R5283 T6588 T6579 arg2Of and,were
R5284 T6589 T6588 arg2Of expressed,and
R5285 T6589 T6590 arg1Of expressed,as

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T6534 266-273 Protein denotes β-actin

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T6593 266-273 http://www.uniprot.org/uniprot/P60709 denotes β-actin

sentences

Id Subject Object Predicate Lexical cue
T6532 232-335 Sentence denotes The results were normalized using β-actin mRNA as an internal control and expressed as relative values.
T6531 126-231 Sentence denotes The reaction conditions were 95°C for 10 min followed by 40 cycles of 95°C for 15 sec and 60°C for 1 min.
T6530 0-125 Sentence denotes The mRNA expression levels were determined by SYBR Green-based real-time PCR (Applied Biosystems, www.appliedbiosystems.com).
T92 0-125 Sentence denotes The mRNA expression levels were determined by SYBR Green-based real-time PCR (Applied Biosystems, www.appliedbiosystems.com).
T93 126-231 Sentence denotes The reaction conditions were 95°C for 10 min followed by 40 cycles of 95°C for 15 sec and 60°C for 1 min.
T94 232-335 Sentence denotes The results were normalized using β-actin mRNA as an internal control and expressed as relative values.

simple1

Id Subject Object Predicate Lexical cue
T6535 266-273 Protein denotes β-actin

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T6667 266-273 Protein denotes β-actin

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T6597 266-273 Protein denotes β-actin

DLUT931

Id Subject Object Predicate Lexical cue
T6596 274-278 Transcription denotes mRNA
T6595 266-273 Protein denotes β-actin
R5288 T6595 T6596 themeOf β-actin,mRNA

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T6674 0-26 Transcription denotes The mRNA expression levels
T6673 0-26 Gene_expression denotes The mRNA expression levels
T6672 4-8 Protein denotes mRNA
T6670 43-124 Protein denotes by SYBR Green-based real-time PCR (Applied Biosystems, www.appliedbiosystems.com)
T6669 266-278 Protein denotes β-actin mRNA
T6668 266-278 Protein denotes β-actin mRNA
R5355 T6672 T6673 themeOf mRNA,The mRNA expression levels
R5356 T6672 T6674 themeOf mRNA,The mRNA expression levels

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T6666 334-335 . denotes .
T6665 328-334 NNS denotes values
T6664 319-327 JJ denotes relative
T6663 316-318 IN denotes as
T6662 306-315 VBD denotes expressed
T6661 302-305 CC denotes and
T6660 294-301 NN denotes control
T6659 285-293 JJ denotes internal
T6658 282-284 DT denotes an
T6657 279-281 IN denotes as
T6656 274-278 NNP denotes mRNA
T6655 266-273 JJ denotes β-actin
T6654 260-265 VBG denotes using
T6653 249-259 VBN denotes normalized
T6652 244-248 VBD denotes were
T6651 236-243 NNS denotes results
T6650 232-235 DT denotes The
T6649 230-231 . denotes .
T6648 227-230 NN denotes min
T6647 225-226 CD denotes 1
T6646 221-224 IN denotes for
T6645 219-220 NNP denotes C
T6644 218-219 NN denotes °
T6643 216-218 CD denotes 60
T6642 212-215 CC denotes and
T6641 208-211 NN denotes sec
T6640 205-207 CD denotes 15
T6639 201-204 IN denotes for
T6638 199-200 NNP denotes C
T6637 198-199 CD denotes °
T6636 196-198 CD denotes 95
T6635 193-195 IN denotes of
T6634 186-192 NNS denotes cycles
T6633 183-185 CD denotes 40
T6632 180-182 IN denotes by
T6631 171-179 VBN denotes followed
T6630 167-170 NN denotes min
T6629 164-166 CD denotes 10
T6628 160-163 IN denotes for
T6627 158-159 NNP denotes C
T6626 157-158 NN denotes °
T6625 155-157 CD denotes 95
T6624 150-154 VBD denotes were
T6623 139-149 NNS denotes conditions
T6622 130-138 NN denotes reaction
T6621 126-129 DT denotes The
T6620 124-125 . denotes .
T6619 123-124 -RRB- denotes )
T6618 98-123 NN denotes www.appliedbiosystems.com
T6617 96-97 , denotes ,
T6616 86-96 NNPS denotes Biosystems
T6615 78-85 NNP denotes Applied
T6614 77-78 -LRB- denotes (
T6613 73-76 NNP denotes PCR
T6612 63-72 JJ denotes real-time
T6611 51-62 JJ denotes Green-based
T6610 46-50 NNP denotes SYBR
T6609 43-45 IN denotes by
T6608 32-42 VBN denotes determined
T6607 27-31 VBD denotes were
T6606 20-26 NNS denotes levels
T6605 9-19 NN denotes expression
T6604 4-8 NNP denotes mRNA
T6603 0-3 DT denotes The
R5291 T6603 T6606 det The,levels
R5292 T6604 T6606 compound mRNA,levels
R5293 T6605 T6606 compound expression,levels
R5294 T6606 T6608 nsubjpass levels,determined
R5295 T6607 T6608 auxpass were,determined
R5296 T6608 T6608 ROOT determined,determined
R5297 T6609 T6608 agent by,determined
R5298 T6610 T6613 nmod SYBR,PCR
R5299 T6611 T6613 nmod Green-based,PCR
R5300 T6612 T6613 amod real-time,PCR
R5301 T6613 T6609 pobj PCR,by
R5302 T6614 T6616 punct (,Biosystems
R5303 T6615 T6616 compound Applied,Biosystems
R5304 T6616 T6613 parataxis Biosystems,PCR
R5305 T6617 T6616 punct ",",Biosystems
R5306 T6618 T6616 appos www.appliedbiosystems.com,Biosystems
R5307 T6619 T6616 punct ),Biosystems
R5308 T6620 T6608 punct .,determined
R5309 T6621 T6623 det The,conditions
R5310 T6622 T6623 compound reaction,conditions
R5311 T6623 T6624 nsubj conditions,were
R5312 T6624 T6631 auxpass were,followed
R5313 T6625 T6626 nummod 95,°
R5314 T6626 T6627 compound °,C
R5315 T6627 T6631 npadvmod C,followed
R5316 T6628 T6627 prep for,C
R5317 T6629 T6630 nummod 10,min
R5318 T6630 T6628 pobj min,for
R5319 T6631 T6631 ROOT followed,followed
R5320 T6632 T6631 agent by,followed
R5321 T6633 T6634 nummod 40,cycles
R5322 T6634 T6632 pobj cycles,by
R5323 T6635 T6634 prep of,cycles
R5324 T6636 T6638 nummod 95,C
R5325 T6637 T6638 compound °,C
R5326 T6638 T6635 pobj C,of
R5327 T6639 T6631 prep for,followed
R5328 T6640 T6641 nummod 15,sec
R5329 T6641 T6639 pobj sec,for
R5330 T6642 T6641 cc and,sec
R5331 T6643 T6644 nummod 60,°
R5332 T6644 T6645 compound °,C
R5333 T6645 T6641 conj C,sec
R5334 T6646 T6641 prep for,sec
R5335 T6647 T6648 nummod 1,min
R5336 T6648 T6646 pobj min,for
R5337 T6649 T6631 punct .,followed
R5338 T6650 T6651 det The,results
R5339 T6651 T6652 nsubj results,were
R5340 T6652 T6652 ROOT were,were
R5341 T6653 T6652 acomp normalized,were
R5342 T6654 T6653 advcl using,normalized
R5343 T6655 T6656 compound β-actin,mRNA
R5344 T6656 T6654 dobj mRNA,using
R5345 T6657 T6654 prep as,using
R5346 T6658 T6660 det an,control
R5347 T6659 T6660 amod internal,control
R5348 T6660 T6657 pobj control,as
R5349 T6661 T6652 cc and,were
R5350 T6662 T6652 conj expressed,were
R5351 T6663 T6662 prep as,expressed
R5352 T6664 T6665 amod relative,values
R5353 T6665 T6663 pobj values,as
R5354 T6666 T6652 punct .,were

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T6599 266-278 Protein denotes β-actin mRNA

testone

Id Subject Object Predicate Lexical cue
T6525 4-19 Transcription denotes mRNA expression
T6524 266-273 Protein denotes β-actin

test3

Id Subject Object Predicate Lexical cue
T6528 266-273 Protein denotes β-actin
T6527 4-19 Transcription denotes mRNA expression
T6526 266-273 Protein denotes β-actin