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PMC:3320587 / 12648-13597 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T5777 945-948 NN denotes MDM
T5776 937-944 JJ denotes primary
T5775 934-936 IN denotes of
T5774 924-933 NN denotes infection
T5773 921-923 IN denotes of
T5772 914-920 NN denotes course
T5771 910-913 DT denotes the
T5770 905-909 IN denotes over
T5769 895-904 VB denotes increased
T5768 888-894 NN denotes levels
T5767 875-887 NN denotes mycobacteria
T5766 870-874 IN denotes that
T5765 859-869 VB denotes confirming
T5764 857-858 -COMMA- denotes ,
T5763 845-857 RB denotes respectively
T5762 843-844 -COMMA- denotes ,
T5761 838-843 CD denotes 5×104
T5760 834-837 CC denotes and
T5759 828-833 CD denotes 6×103
T5758 823-827 VB denotes were
T5757 816-822 NN denotes counts
T5756 812-815 NNP denotes CFU
T5755 804-811 JJ denotes average
T5754 800-803 DT denotes the
T5753 798-799 CD denotes 7
T5752 794-797 CC denotes and
T5751 792-793 CD denotes 4
T5750 787-791 NN denotes days
T5749 784-786 IN denotes on
T5748 780-783 CC denotes and
T5747 770-779 VB denotes performed
T5746 766-769 VB denotes was
T5745 757-765 NN denotes analysis
T5744 755-756 -RRB- denotes )
T5743 752-755 NN denotes CFU
T5742 751-752 -LRB- denotes (
T5741 746-750 NN denotes unit
T5740 731-745 JJ denotes Colony-forming
T5739 716-729 NN denotes THP-1∶bacilli
T5738 712-715 CC denotes and
T5737 704-711 NN denotes bacilli
T5736 699-703 NN denotes MDM∶
T5735 695-698 CD denotes 1∶1
T5734 692-694 CC denotes or
T5733 684-691 NN denotes bacilli
T5732 678-683 NN denotes PBMC∶
T5731 673-677 CD denotes 10∶1
T5730 670-672 IN denotes at
T5729 662-669 NN denotes studies
T5728 652-661 NN denotes infection
T5727 647-651 NN denotes cell
T5726 643-646 IN denotes for
T5725 636-642 NN denotes medium
T5724 631-635 CD denotes 1640
T5723 626-630 NN denotes RPMI
T5722 621-625 IN denotes with
T5721 612-620 NN denotes dilution
T5720 604-611 JJ denotes further
T5719 597-603 IN denotes before
T5718 591-596 NN denotes OD650
T5717 588-590 IN denotes of
T5716 576-587 NN denotes measurement
T5715 573-575 IN denotes by
T5714 562-572 VB denotes determined
T5713 557-561 VB denotes were
T5712 549-556 NN denotes numbers
T5711 544-548 NN denotes cell
T5710 534-543 JJ denotes Bacterial
T5709 522-532 NN denotes suspension
T5708 517-521 NN denotes cell
T5707 510-516 JJ denotes single
T5706 508-509 DT denotes a
T5705 505-507 IN denotes in
T5704 500-504 VB denotes were
T5703 491-499 NN denotes bacteria
T5702 487-490 DT denotes the
T5701 482-486 IN denotes that
T5700 475-481 VB denotes ensure
T5699 472-474 TO denotes to
T5698 465-471 NN denotes filter
T5697 462-464 NN denotes µm
T5696 460-461 CD denotes 5
T5695 458-459 DT denotes a
T5694 450-457 IN denotes through
T5693 443-449 VB denotes passed
T5692 439-442 CC denotes and
T5691 437-438 -COMMA- denotes ,
T5690 434-437 NNP denotes PBS
T5689 431-433 IN denotes in
T5688 419-430 VB denotes resuspended
T5687 417-418 -COMMA- denotes ,
T5686 414-417 NNP denotes PBS
T5685 409-413 IN denotes with
T5684 402-408 VB denotes washed
T5683 400-401 -COMMA- denotes ,
T5682 394-400 VB denotes plated
T5681 389-393 RB denotes then
T5680 384-388 VB denotes were
T5679 375-383 NN denotes Bacteria
T5678 368-373 NN denotes phase
T5677 361-367 NN denotes growth
T5676 349-360 JJ denotes logarithmic
T5675 345-348 DT denotes the
T5674 342-344 IN denotes in
T5673 337-341 VB denotes were
T5672 332-336 PRP denotes they
T5671 327-331 IN denotes that
T5670 320-326 VB denotes ensure
T5669 317-319 TO denotes to
T5668 312-316 NN denotes 37°C
T5667 309-311 IN denotes at
T5666 305-308 CD denotes 0.4
T5665 302-304 IN denotes of
T5664 296-301 NN denotes OD650
T5663 293-295 DT denotes an
T5662 290-292 TO denotes to
T5661 284-289 VB denotes grown
T5660 279-283 VB denotes were
T5659 270-278 NN denotes cultures
T5658 266-269 DT denotes The
T5657 263-264 -RRB- denotes )
T5656 243-263 NN denotes www.sigmaaldrich.com
T5655 241-242 -COMMA- denotes ,
T5654 228-241 JJ denotes Sigma-Aldrich
T5653 227-228 -LRB- denotes (
T5652 224-226 CD denotes 80
T5651 218-223 CD denotes Tween
T5650 216-217 NN denotes %
T5649 212-216 CD denotes 0.05
T5648 208-211 CC denotes and
T5647 206-207 -RRB- denotes )
T5646 203-206 NN denotes ADC
T5645 202-203 -LRB- denotes (
T5644 194-201 NN denotes complex
T5643 185-193 NN denotes dextrose
T5642 177-184 NN denotes albumin
T5641 172-176 IN denotes with
T5640 159-171 VB denotes supplemented
T5639 157-158 -RRB- denotes )
T5638 147-157 NN denotes www.bd.com
T5637 145-146 -COMMA- denotes ,
T5636 143-145 NNP denotes BD
T5635 137-142 NNP denotes Difco
T5634 136-137 -LRB- denotes (
T5633 129-135 NN denotes medium
T5632 125-128 NN denotes 7H9
T5631 113-124 NNP denotes Middlebrook
T5630 110-112 IN denotes of
T5629 107-109 NN denotes ml
T5628 104-106 CD denotes 10
T5627 99-103 IN denotes into
T5626 93-98 NN denotes stock
T5625 84-92 NN denotes bacteria
T5624 77-83 VB denotes frozen
T5623 74-76 IN denotes of
T5622 71-73 NN denotes µl
T5621 67-70 CD denotes 100
T5620 60-66 VB denotes adding
T5619 57-59 IN denotes by
T5618 48-56 VB denotes prepared
T5617 44-47 VB denotes was
T5616 36-43 NN denotes CDC1551
T5615 29-35 NN denotes strain
T5614 20-28 JJ denotes clinical
T5613 16-19 NN denotes MTb
T5612 12-15 DT denotes The
T5611 4-11 NN denotes culture
T5610 0-3 NN denotes MTb
R4410 T5611 T5610 arg1Of culture,MTb
R4411 T5616 T5612 arg1Of CDC1551,The
R4412 T5616 T5613 arg1Of CDC1551,MTb
R4413 T5616 T5614 arg1Of CDC1551,clinical
R4414 T5616 T5615 arg1Of CDC1551,strain
R4415 T5616 T5617 arg1Of CDC1551,was
R4416 T5616 T5618 arg2Of CDC1551,prepared
R4417 T5618 T5617 arg2Of prepared,was
R4418 T5618 T5619 arg1Of prepared,by
R4419 T5620 T5619 arg2Of adding,by
R4420 T5622 T5620 arg2Of µl,adding
R4421 T5622 T5621 arg1Of µl,100
R4422 T5622 T5623 arg1Of µl,of
R4423 T5622 T5627 arg1Of µl,into
R4424 T5622 T5640 arg2Of µl,supplemented
R4425 T5626 T5623 arg2Of stock,of
R4426 T5626 T5624 arg2Of stock,frozen
R4427 T5626 T5625 arg1Of stock,bacteria
R4428 T5629 T5627 arg2Of ml,into
R4429 T5629 T5628 arg1Of ml,10
R4430 T5629 T5630 arg1Of ml,of
R4431 T5633 T5630 arg2Of medium,of
R4432 T5633 T5631 arg1Of medium,Middlebrook
R4433 T5633 T5632 arg1Of medium,7H9
R4434 T5633 T5634 arg1Of medium,(
R4435 T5636 T5634 arg2Of BD,(
R4436 T5636 T5635 arg1Of BD,Difco
R4437 T5636 T5637 arg1Of BD,","
R4438 T5638 T5637 arg2Of www.bd.com,","
R4439 T5639 T5634 arg3Of ),(
R4440 T5640 T5641 arg1Of supplemented,with
R4441 T5644 T5642 arg1Of complex,albumin
R4442 T5644 T5643 arg1Of complex,dextrose
R4443 T5644 T5645 arg1Of complex,(
R4444 T5644 T5648 arg1Of complex,and
R4445 T5646 T5645 arg2Of ADC,(
R4446 T5647 T5645 arg3Of ),(
R4447 T5648 T5641 arg2Of and,with
R4448 T5650 T5649 arg1Of %,0.05
R4449 T5652 T5648 arg2Of 80,and
R4450 T5652 T5650 arg1Of 80,%
R4451 T5652 T5651 arg1Of 80,Tween
R4452 T5652 T5653 arg1Of 80,(
R4453 T5654 T5653 arg2Of Sigma-Aldrich,(
R4454 T5654 T5655 arg1Of Sigma-Aldrich,","
R4455 T5656 T5655 arg2Of www.sigmaaldrich.com,","
R4456 T5657 T5653 arg3Of ),(
R4457 T5659 T5658 arg1Of cultures,The
R4458 T5659 T5660 arg1Of cultures,were
R4459 T5659 T5661 arg2Of cultures,grown
R4460 T5659 T5670 arg1Of cultures,ensure
R4461 T5661 T5660 arg2Of grown,were
R4462 T5661 T5662 arg1Of grown,to
R4463 T5661 T5667 arg1Of grown,at
R4464 T5661 T5669 modOf grown,to
R4465 T5664 T5662 arg2Of OD650,to
R4466 T5664 T5663 arg1Of OD650,an
R4467 T5664 T5665 arg1Of OD650,of
R4468 T5666 T5665 arg2Of 0.4,of
R4469 T5668 T5667 arg2Of 37°C,at
R4470 T5670 T5669 arg1Of ensure,to
R4471 T5672 T5673 arg1Of they,were
R4472 T5672 T5674 arg1Of they,in
R4473 T5673 T5670 arg2Of were,ensure
R4474 T5673 T5671 arg1Of were,that
R4475 T5674 T5673 arg2Of in,were
R4476 T5678 T5674 arg2Of phase,in
R4477 T5678 T5675 arg1Of phase,the
R4478 T5678 T5676 arg1Of phase,logarithmic
R4479 T5678 T5677 arg1Of phase,growth
R4480 T5679 T5680 arg1Of Bacteria,were
R4481 T5679 T5682 arg2Of Bacteria,plated
R4482 T5679 T5684 arg2Of Bacteria,washed
R4483 T5682 T5683 arg1Of plated,","
R4484 T5683 T5680 arg2Of ",",were
R4485 T5683 T5681 arg1Of ",",then
R4486 T5684 T5683 arg2Of washed,","
R4487 T5684 T5685 arg1Of washed,with
R4488 T5686 T5685 arg2Of PBS,with
R4489 T5686 T5688 arg2Of PBS,resuspended
R4490 T5686 T5693 arg2Of PBS,passed
R4491 T5688 T5689 arg1Of resuspended,in
R4492 T5688 T5692 arg1Of resuspended,and
R4493 T5690 T5689 arg2Of PBS,in
R4494 T5692 T5687 arg1Of and,","
R4495 T5692 T5691 arg1Of and,","
R4496 T5693 T5692 arg2Of passed,and
R4497 T5693 T5694 arg1Of passed,through
R4498 T5698 T5694 arg2Of filter,through
R4499 T5698 T5695 arg1Of filter,a
R4500 T5698 T5696 arg1Of filter,5
R4501 T5698 T5697 arg1Of filter,µm
R4502 T5698 T5699 modOf filter,to
R4503 T5698 T5700 arg1Of filter,ensure
R4504 T5700 T5699 arg1Of ensure,to
R4505 T5703 T5702 arg1Of bacteria,the
R4506 T5703 T5704 arg1Of bacteria,were
R4507 T5703 T5705 arg1Of bacteria,in
R4508 T5704 T5700 arg2Of were,ensure
R4509 T5704 T5701 arg1Of were,that
R4510 T5705 T5704 arg2Of in,were
R4511 T5709 T5705 arg2Of suspension,in
R4512 T5709 T5706 arg1Of suspension,a
R4513 T5709 T5707 arg1Of suspension,single
R4514 T5709 T5708 arg1Of suspension,cell
R4515 T5712 T5710 arg1Of numbers,Bacterial
R4516 T5712 T5711 arg1Of numbers,cell
R4517 T5712 T5713 arg1Of numbers,were
R4518 T5712 T5714 arg2Of numbers,determined
R4519 T5714 T5713 arg2Of determined,were
R4520 T5716 T5714 arg1Of measurement,determined
R4521 T5716 T5715 arg2Of measurement,by
R4522 T5716 T5717 arg1Of measurement,of
R4523 T5718 T5717 arg2Of OD650,of
R4524 T5718 T5719 arg1Of OD650,before
R4525 T5721 T5719 arg2Of dilution,before
R4526 T5721 T5720 arg1Of dilution,further
R4527 T5721 T5722 arg1Of dilution,with
R4528 T5725 T5722 arg2Of medium,with
R4529 T5725 T5723 arg1Of medium,RPMI
R4530 T5725 T5724 arg1Of medium,1640
R4531 T5725 T5726 arg1Of medium,for
R4532 T5725 T5730 arg1Of medium,at
R4533 T5729 T5726 arg2Of studies,for
R4534 T5729 T5727 arg1Of studies,cell
R4535 T5729 T5728 arg1Of studies,infection
R4536 T5733 T5731 arg1Of bacilli,10∶1
R4537 T5733 T5732 arg1Of bacilli,PBMC∶
R4538 T5733 T5734 arg1Of bacilli,or
R4539 T5734 T5730 arg2Of or,at
R4540 T5737 T5735 arg1Of bacilli,1∶1
R4541 T5737 T5736 arg1Of bacilli,MDM∶
R4542 T5737 T5738 arg1Of bacilli,and
R4543 T5738 T5734 arg2Of and,or
R4544 T5739 T5738 arg2Of THP-1∶bacilli,and
R4545 T5743 T5742 arg2Of CFU,(
R4546 T5744 T5742 arg3Of ),(
R4547 T5745 T5740 arg1Of analysis,Colony-forming
R4548 T5745 T5741 arg1Of analysis,unit
R4549 T5745 T5742 arg1Of analysis,(
R4550 T5745 T5746 arg1Of analysis,was
R4551 T5745 T5747 arg2Of analysis,performed
R4552 T5747 T5746 arg2Of performed,was
R4553 T5747 T5748 arg1Of performed,and
R4554 T5747 T5749 arg1Of performed,on
R4555 T5751 T5752 arg1Of 4,and
R4556 T5752 T5749 arg2Of and,on
R4557 T5752 T5750 arg1Of and,days
R4558 T5753 T5752 arg2Of 7,and
R4559 T5757 T5754 arg1Of counts,the
R4560 T5757 T5755 arg1Of counts,average
R4561 T5757 T5756 arg1Of counts,CFU
R4562 T5757 T5758 arg1Of counts,were
R4563 T5758 T5746 modOf were,was
R4564 T5758 T5762 arg1Of were,","
R4565 T5758 T5763 arg1Of were,respectively
R4566 T5758 T5764 arg1Of were,","
R4567 T5758 T5765 modOf were,confirming
R4568 T5759 T5760 arg1Of 6×103,and
R4569 T5760 T5758 arg2Of and,were
R4570 T5761 T5760 arg2Of 5×104,and
R4571 T5768 T5767 arg1Of levels,mycobacteria
R4572 T5768 T5769 arg1Of levels,increased
R4573 T5769 T5765 arg2Of increased,confirming
R4574 T5769 T5766 arg1Of increased,that
R4575 T5769 T5770 arg1Of increased,over
R4576 T5772 T5770 arg2Of course,over
R4577 T5772 T5771 arg1Of course,the
R4578 T5772 T5773 arg1Of course,of
R4579 T5774 T5773 arg2Of infection,of
R4580 T5774 T5775 arg1Of infection,of
R4581 T5777 T5775 arg2Of MDM,of
R4582 T5777 T5776 arg1Of MDM,primary

GO-BP

Id Subject Object Predicate Lexical cue
T5606 361-367 http://purl.obolibrary.org/obo/GO_0040007 denotes growth

GO-CC

Id Subject Object Predicate Lexical cue
T5609 647-651 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T5608 544-548 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T5607 517-521 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T5605 731-949 Sentence denotes Colony-forming unit (CFU) analysis was performed and on days 4 and 7 the average CFU counts were 6×103 and 5×104, respectively, confirming that mycobacteria levels increased over the course of infection of primary MDM.
T5604 534-730 Sentence denotes Bacterial cell numbers were determined by measurement of OD650 before further dilution with RPMI 1640 medium for cell infection studies at 10∶1 PBMC∶ bacilli or 1∶1 MDM∶ bacilli and THP-1∶bacilli.
T5603 375-533 Sentence denotes Bacteria were then plated, washed with PBS, resuspended in PBS, and passed through a 5 µm filter to ensure that the bacteria were in a single cell suspension.
T5602 266-374 Sentence denotes The cultures were grown to an OD650 of 0.4 at 37°C to ensure that they were in the logarithmic growth phase.
T5601 12-265 Sentence denotes The MTb clinical strain CDC1551 was prepared by adding 100 µl of frozen bacteria stock into 10 ml of Middlebrook 7H9 medium (Difco BD, www.bd.com) supplemented with albumin dextrose complex (ADC) and 0.05% Tween 80 (Sigma-Aldrich, www.sigmaaldrich.com).
T5600 0-11 Sentence denotes MTb culture
T77 0-11 Sentence denotes MTb culture
T78 12-265 Sentence denotes The MTb clinical strain CDC1551 was prepared by adding 100 µl of frozen bacteria stock into 10 ml of Middlebrook 7H9 medium (Difco BD, www.bd.com) supplemented with albumin dextrose complex (ADC) and 0.05% Tween 80 (Sigma-Aldrich, www.sigmaaldrich.com).
T79 266-374 Sentence denotes The cultures were grown to an OD650 of 0.4 at 37°C to ensure that they were in the logarithmic growth phase.
T80 375-533 Sentence denotes Bacteria were then plated, washed with PBS, resuspended in PBS, and passed through a 5 µm filter to ensure that the bacteria were in a single cell suspension.
T81 534-730 Sentence denotes Bacterial cell numbers were determined by measurement of OD650 before further dilution with RPMI 1640 medium for cell infection studies at 10∶1 PBMC∶ bacilli or 1∶1 MDM∶ bacilli and THP-1∶bacilli.
T82 731-949 Sentence denotes Colony-forming unit (CFU) analysis was performed and on days 4 and 7 the average CFU counts were 6×103 and 5×104, respectively, confirming that mycobacteria levels increased over the course of infection of primary MDM.

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T5984 924-948 Regulation denotes infection of primary MDM
T5983 177-207 Entity denotes albumin dextrose complex (ADC)
T5982 177-207 Protein denotes albumin dextrose complex (ADC)
T5981 934-948 Protein denotes of primary MDM
T5980 228-233 Protein denotes Sigma
T5979 177-207 Entity denotes albumin dextrose complex (ADC)
T5978 203-206 Entity denotes ADC
T5977 508-532 Entity denotes a single cell suspension
T5976 647-651 Entity denotes cell
T5975 16-19 Protein denotes MTb
T5974 137-140 Protein denotes Dif
T5973 604-651 Entity denotes further dilution with RPMI 1640 medium for cell
T5972 137-142 Entity denotes Difco
T5971 0-3 Protein denotes MTb
R4770 T5981 T5984 themeOf of primary MDM,infection of primary MDM

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T5970 948-949 . denotes .
T5969 945-948 NNP denotes MDM
T5968 937-944 JJ denotes primary
T5967 934-936 IN denotes of
T5966 924-933 NN denotes infection
T5965 921-923 IN denotes of
T5964 914-920 NN denotes course
T5963 910-913 DT denotes the
T5962 905-909 IN denotes over
T5961 895-904 VBD denotes increased
T5960 888-894 NNS denotes levels
T5959 875-887 NN denotes mycobacteria
T5958 870-874 IN denotes that
T5957 859-869 VBG denotes confirming
T5956 857-858 , denotes ,
T5955 845-857 RB denotes respectively
T5954 843-844 , denotes ,
T5953 840-843 CD denotes 104
T5952 839-840 CD denotes ×
T5951 838-839 CD denotes 5
T5950 834-837 CC denotes and
T5949 830-833 CD denotes 103
T5948 829-830 NN denotes ×
T5947 828-829 CD denotes 6
T5946 823-827 VBD denotes were
T5945 816-822 NNS denotes counts
T5944 812-815 NNP denotes CFU
T5943 804-811 JJ denotes average
T5942 800-803 DT denotes the
T5941 798-799 CD denotes 7
T5940 794-797 CC denotes and
T5939 792-793 CD denotes 4
T5938 787-791 NNS denotes days
T5937 784-786 IN denotes on
T5936 780-783 CC denotes and
T5935 770-779 VBN denotes performed
T5934 766-769 VBD denotes was
T5933 757-765 NN denotes analysis
T5932 755-756 -RRB- denotes )
T5931 752-755 NNP denotes CFU
T5930 751-752 -LRB- denotes (
T5929 746-750 NN denotes unit
T5928 731-745 JJ denotes Colony-forming
T5927 729-730 . denotes .
T5926 722-729 NNS denotes bacilli
T5925 721-722 NN denotes ∶
T5924 716-721 CD denotes THP-1
T5923 712-715 CC denotes and
T5922 704-711 NNS denotes bacilli
T5921 702-703 NN denotes ∶
T5920 699-702 NNP denotes MDM
T5919 697-698 CD denotes 1
T5918 696-697 CD denotes ∶
T5917 695-696 CD denotes 1
T5916 692-694 CC denotes or
T5915 684-691 NNS denotes bacilli
T5914 682-683 NN denotes ∶
T5913 678-682 NNP denotes PBMC
T5912 676-677 CD denotes 1
T5911 675-676 NN denotes ∶
T5910 673-675 CD denotes 10
T5909 670-672 IN denotes at
T5908 662-669 NNS denotes studies
T5907 652-661 NN denotes infection
T5906 647-651 NN denotes cell
T5905 643-646 IN denotes for
T5904 636-642 NN denotes medium
T5903 631-635 CD denotes 1640
T5902 626-630 NNP denotes RPMI
T5901 621-625 IN denotes with
T5900 612-620 NN denotes dilution
T5899 604-611 JJ denotes further
T5898 597-603 IN denotes before
T5897 591-596 CD denotes OD650
T5896 588-590 IN denotes of
T5895 576-587 NN denotes measurement
T5894 573-575 IN denotes by
T5893 562-572 VBN denotes determined
T5892 557-561 VBD denotes were
T5891 549-556 NNS denotes numbers
T5890 544-548 NN denotes cell
T5889 534-543 JJ denotes Bacterial
T5860 394-400 VBN denotes plated
T5859 389-393 RB denotes then
T5858 384-388 VBD denotes were
T5857 375-383 NN denotes Bacteria
T5856 373-374 . denotes .
T5855 368-373 NN denotes phase
T5854 361-367 NN denotes growth
T5853 349-360 JJ denotes logarithmic
T5852 345-348 DT denotes the
T5851 342-344 IN denotes in
T5850 337-341 VBD denotes were
T5849 332-336 PRP denotes they
T5848 327-331 IN denotes that
T5847 320-326 VB denotes ensure
T5846 317-319 TO denotes to
T5845 315-316 NNP denotes C
T5844 314-315 CD denotes °
T5843 312-314 CD denotes 37
T5842 309-311 IN denotes at
T5841 305-308 CD denotes 0.4
T5840 302-304 IN denotes of
T5839 296-301 NNP denotes OD650
T5838 293-295 DT denotes an
T5837 290-292 TO denotes to
T5836 284-289 VBN denotes grown
T5835 279-283 VBD denotes were
T5834 270-278 NNS denotes cultures
T5833 266-269 DT denotes The
T5832 264-265 . denotes .
T5831 263-264 -RRB- denotes )
T5830 243-263 NN denotes www.sigmaaldrich.com
T5829 241-242 , denotes ,
T5828 228-241 NNP denotes Sigma-Aldrich
T5827 227-228 -LRB- denotes (
T5826 224-226 CD denotes 80
T5825 218-223 CD denotes Tween
T5824 216-217 NN denotes %
T5823 212-216 CD denotes 0.05
T5822 208-211 CC denotes and
T5821 206-207 -RRB- denotes )
T5820 203-206 NNP denotes ADC
T5819 202-203 -LRB- denotes (
T5818 194-201 NN denotes complex
T5817 185-193 NN denotes dextrose
T5816 177-184 NN denotes albumin
T5815 172-176 IN denotes with
T5814 159-171 VBN denotes supplemented
T5813 157-158 -RRB- denotes )
T5812 147-157 NN denotes www.bd.com
T5811 145-146 , denotes ,
T5810 143-145 NNP denotes BD
T5809 137-142 NNP denotes Difco
T5808 136-137 -LRB- denotes (
T5807 129-135 NN denotes medium
T5806 125-128 NNP denotes 7H9
T5805 113-124 NNP denotes Middlebrook
T5804 110-112 IN denotes of
T5803 107-109 NN denotes ml
T5802 104-106 CD denotes 10
T5801 99-103 IN denotes into
T5800 93-98 NN denotes stock
T5799 84-92 NNS denotes bacteria
T5798 77-83 JJ denotes frozen
T5797 74-76 IN denotes of
T5796 71-73 NN denotes µl
T5795 67-70 CD denotes 100
T5794 60-66 VBG denotes adding
T5793 57-59 IN denotes by
T5792 48-56 VBN denotes prepared
T5791 44-47 VBD denotes was
T5790 36-43 NNP denotes CDC1551
T5789 29-35 NN denotes strain
T5788 20-28 JJ denotes clinical
T5787 16-19 NNP denotes MTb
T5786 12-15 DT denotes The
T5785 4-11 NN denotes culture
T5784 0-3 JJ denotes MTb
T5888 532-533 . denotes .
T5887 522-532 NN denotes suspension
T5886 517-521 NN denotes cell
T5885 510-516 JJ denotes single
T5884 508-509 DT denotes a
T5883 505-507 IN denotes in
T5882 500-504 VBD denotes were
T5881 491-499 NNS denotes bacteria
T5880 487-490 DT denotes the
T5879 482-486 IN denotes that
T5878 475-481 VB denotes ensure
T5877 472-474 TO denotes to
T5876 465-471 NN denotes filter
T5875 462-464 NN denotes µm
T5874 460-461 CD denotes 5
T5873 458-459 DT denotes a
T5872 450-457 IN denotes through
T5871 443-449 VBD denotes passed
T5870 439-442 CC denotes and
T5869 437-438 , denotes ,
T5868 434-437 NNP denotes PBS
T5867 431-433 IN denotes in
T5866 419-430 VBD denotes resuspended
T5865 417-418 , denotes ,
T5864 414-417 NNP denotes PBS
T5863 409-413 IN denotes with
T5862 402-408 VBN denotes washed
T5861 400-401 , denotes ,
R4583 T5784 T5785 amod MTb,culture
R4584 T5785 T5785 ROOT culture,culture
R4585 T5786 T5789 det The,strain
R4586 T5787 T5789 nmod MTb,strain
R4587 T5788 T5789 amod clinical,strain
R4588 T5789 T5792 nsubjpass strain,prepared
R4589 T5790 T5792 nsubjpass CDC1551,prepared
R4590 T5791 T5792 auxpass was,prepared
R4591 T5792 T5792 ROOT prepared,prepared
R4592 T5793 T5792 prep by,prepared
R4593 T5794 T5793 pcomp adding,by
R4594 T5795 T5796 nummod 100,µl
R4595 T5796 T5794 dobj µl,adding
R4596 T5797 T5796 prep of,µl
R4597 T5798 T5799 amod frozen,bacteria
R4598 T5799 T5797 pobj bacteria,of
R4599 T5800 T5796 conj stock,µl
R4600 T5801 T5794 prep into,adding
R4601 T5802 T5803 nummod 10,ml
R4602 T5803 T5801 pobj ml,into
R4603 T5804 T5803 prep of,ml
R4604 T5805 T5806 compound Middlebrook,7H9
R4605 T5806 T5807 compound 7H9,medium
R4606 T5807 T5804 pobj medium,of
R4607 T5808 T5810 punct (,BD
R4608 T5809 T5810 compound Difco,BD
R4609 T5810 T5803 appos BD,ml
R4610 T5811 T5810 punct ",",BD
R4611 T5812 T5810 appos www.bd.com,BD
R4612 T5813 T5810 punct ),BD
R4613 T5814 T5792 conj supplemented,prepared
R4614 T5815 T5814 prep with,supplemented
R4615 T5816 T5818 nmod albumin,complex
R4616 T5817 T5818 compound dextrose,complex
R4617 T5818 T5815 pobj complex,with
R4618 T5819 T5820 punct (,ADC
R4619 T5820 T5818 appos ADC,complex
R4620 T5821 T5820 punct ),ADC
R4621 T5822 T5818 cc and,complex
R4622 T5823 T5824 nummod 0.05,%
R4623 T5824 T5814 npadvmod %,supplemented
R4624 T5825 T5826 nummod Tween,80
R4625 T5826 T5828 nummod 80,Sigma-Aldrich
R4626 T5827 T5828 punct (,Sigma-Aldrich
R4627 T5828 T5814 appos Sigma-Aldrich,supplemented
R4628 T5829 T5828 punct ",",Sigma-Aldrich
R4629 T5830 T5828 appos www.sigmaaldrich.com,Sigma-Aldrich
R4630 T5831 T5828 punct ),Sigma-Aldrich
R4631 T5832 T5792 punct .,prepared
R4632 T5833 T5834 det The,cultures
R4633 T5834 T5836 nsubjpass cultures,grown
R4634 T5835 T5836 auxpass were,grown
R4635 T5836 T5836 ROOT grown,grown
R4636 T5837 T5836 prep to,grown
R4637 T5838 T5839 det an,OD650
R4638 T5839 T5837 pobj OD650,to
R4639 T5840 T5839 prep of,OD650
R4640 T5841 T5840 pobj 0.4,of
R4641 T5842 T5836 prep at,grown
R4642 T5843 T5844 nummod 37,°
R4643 T5844 T5845 nummod °,C
R4644 T5845 T5842 pobj C,at
R4645 T5846 T5847 aux to,ensure
R4646 T5847 T5836 advcl ensure,grown
R4647 T5848 T5850 mark that,were
R4648 T5849 T5850 nsubj they,were
R4649 T5850 T5847 ccomp were,ensure
R4650 T5851 T5850 prep in,were
R4651 T5852 T5855 det the,phase
R4652 T5853 T5855 amod logarithmic,phase
R4653 T5854 T5855 compound growth,phase
R4654 T5855 T5851 pobj phase,in
R4655 T5856 T5836 punct .,grown
R4656 T5857 T5860 nsubjpass Bacteria,plated
R4657 T5858 T5860 auxpass were,plated
R4658 T5859 T5860 advmod then,plated
R4659 T5860 T5860 ROOT plated,plated
R4660 T5861 T5860 punct ",",plated
R4661 T5862 T5860 conj washed,plated
R4662 T5863 T5862 prep with,washed
R4663 T5864 T5863 pobj PBS,with
R4664 T5865 T5862 punct ",",washed
R4665 T5866 T5862 conj resuspended,washed
R4666 T5867 T5866 prep in,resuspended
R4667 T5868 T5867 pobj PBS,in
R4668 T5869 T5866 punct ",",resuspended
R4669 T5870 T5866 cc and,resuspended
R4670 T5871 T5866 conj passed,resuspended
R4671 T5872 T5871 prep through,passed
R4672 T5873 T5876 det a,filter
R4673 T5874 T5875 nummod 5,µm
R4674 T5875 T5876 compound µm,filter
R4675 T5876 T5872 pobj filter,through
R4676 T5877 T5878 aux to,ensure
R4677 T5878 T5871 advcl ensure,passed
R4678 T5879 T5882 mark that,were
R4679 T5880 T5881 det the,bacteria
R4680 T5881 T5882 nsubj bacteria,were
R4681 T5882 T5878 ccomp were,ensure
R4682 T5883 T5882 prep in,were
R4683 T5884 T5887 det a,suspension
R4684 T5885 T5887 amod single,suspension
R4685 T5886 T5887 compound cell,suspension
R4686 T5887 T5883 pobj suspension,in
R4687 T5888 T5860 punct .,plated
R4688 T5889 T5891 amod Bacterial,numbers
R4689 T5890 T5891 compound cell,numbers
R4690 T5891 T5893 nsubjpass numbers,determined
R4691 T5892 T5893 auxpass were,determined
R4692 T5893 T5893 ROOT determined,determined
R4693 T5894 T5893 agent by,determined
R4694 T5895 T5894 pobj measurement,by
R4695 T5896 T5895 prep of,measurement
R4696 T5897 T5896 pobj OD650,of
R4697 T5898 T5893 prep before,determined
R4698 T5899 T5900 amod further,dilution
R4699 T5900 T5898 pobj dilution,before
R4700 T5901 T5900 prep with,dilution
R4701 T5902 T5904 compound RPMI,medium
R4702 T5903 T5904 compound 1640,medium
R4703 T5904 T5901 pobj medium,with
R4704 T5905 T5904 prep for,medium
R4705 T5906 T5907 compound cell,infection
R4706 T5907 T5908 compound infection,studies
R4707 T5908 T5905 pobj studies,for
R4708 T5909 T5900 prep at,dilution
R4709 T5910 T5911 nummod 10,∶
R4710 T5911 T5909 pobj ∶,at
R4711 T5912 T5915 nummod 1,bacilli
R4712 T5913 T5915 compound PBMC,bacilli
R4713 T5914 T5915 compound ∶,bacilli
R4714 T5915 T5900 conj bacilli,dilution
R4715 T5916 T5915 cc or,bacilli
R4716 T5917 T5922 nummod 1,bacilli
R4717 T5918 T5922 nummod ∶,bacilli
R4718 T5919 T5922 nummod 1,bacilli
R4719 T5920 T5922 nmod MDM,bacilli
R4720 T5921 T5922 compound ∶,bacilli
R4721 T5922 T5915 conj bacilli,bacilli
R4722 T5923 T5922 cc and,bacilli
R4723 T5924 T5926 nummod THP-1,bacilli
R4724 T5925 T5926 compound ∶,bacilli
R4725 T5926 T5922 conj bacilli,bacilli
R4726 T5927 T5893 punct .,determined
R4727 T5928 T5929 amod Colony-forming,unit
R4728 T5929 T5935 nsubjpass unit,performed
R4729 T5930 T5929 punct (,unit
R4730 T5931 T5929 appos CFU,unit
R4731 T5932 T5933 punct ),analysis
R4732 T5933 T5935 nsubjpass analysis,performed
R4733 T5934 T5935 auxpass was,performed
R4734 T5935 T5935 ROOT performed,performed
R4735 T5936 T5935 cc and,performed
R4736 T5937 T5941 prep on,7
R4737 T5938 T5937 pobj days,on
R4738 T5939 T5938 nummod 4,days
R4739 T5940 T5938 cc and,days
R4740 T5941 T5935 conj 7,performed
R4741 T5942 T5945 det the,counts
R4742 T5943 T5945 amod average,counts
R4743 T5944 T5945 compound CFU,counts
R4744 T5945 T5946 nsubj counts,were
R4745 T5946 T5935 conj were,performed
R4746 T5947 T5948 nummod 6,×
R4747 T5948 T5946 attr ×,were
R4748 T5949 T5948 nummod 103,×
R4749 T5950 T5948 cc and,×
R4750 T5951 T5953 nummod 5,104
R4751 T5952 T5953 nummod ×,104
R4752 T5953 T5948 conj 104,×
R4753 T5954 T5948 punct ",",×
R4754 T5955 T5948 advmod respectively,×
R4755 T5956 T5946 punct ",",were
R4756 T5957 T5946 advcl confirming,were
R4757 T5958 T5961 mark that,increased
R4758 T5959 T5960 compound mycobacteria,levels
R4759 T5960 T5961 nsubj levels,increased
R4760 T5961 T5957 ccomp increased,confirming
R4761 T5962 T5961 prep over,increased
R4762 T5963 T5964 det the,course
R4763 T5964 T5962 pobj course,over
R4764 T5965 T5964 prep of,course
R4765 T5966 T5965 pobj infection,of
R4766 T5967 T5966 prep of,infection
R4767 T5968 T5969 amod primary,MDM
R4768 T5969 T5967 pobj MDM,of
R4769 T5970 T5946 punct .,were

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T5780 228-263 Protein denotes Sigma-Aldrich, www.sigmaaldrich.com
T5779 203-206 Protein denotes ADC
T5778 177-201 Protein denotes albumin dextrose complex