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PMC:3320587 / 1084-1208 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T361 115-121 JJ denotes innate
T360 111-114 DT denotes the
T359 109-110 -COMMA- denotes ,
T358 105-109 RB denotes Thus
T357 93-103 NN denotes expression
T356 88-92 NN denotes gene
T355 82-87 NN denotes NFAT5
T354 70-81 JJ denotes MTb-induced
T353 61-69 VB denotes inhibits
T352 47-60 RB denotes significantly
T351 45-46 -COMMA- denotes ,
T350 40-45 NN denotes TRAF6
T349 36-39 CC denotes and
T348 34-35 -COMMA- denotes ,
T347 29-34 NN denotes IRAK1
T346 27-28 -COMMA- denotes ,
T345 22-27 NN denotes MyD88
T344 12-21 NN denotes molecules
T343 2-11 VB denotes signaling
R172 T344 T343 arg1Of molecules,signaling
R173 T345 T346 arg1Of MyD88,","
R174 T346 T349 arg1Of ",",and
R175 T347 T346 arg2Of IRAK1,","
R177 T349 T344 arg1Of and,molecules
R178 T349 T348 arg1Of and,","
R179 T350 T349 arg2Of TRAF6,and
R182 T353 T351 arg1Of inhibits,","
R183 T353 T352 arg1Of inhibits,significantly
R184 T357 T353 arg2Of expression,inhibits
R185 T357 T354 arg1Of expression,MTb-induced
R186 T357 T355 arg1Of expression,NFAT5
R187 T357 T356 arg1Of expression,gene

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T89 22-27 Protein denotes MyD88
T90 29-34 Protein denotes IRAK1
T91 40-45 Protein denotes TRAF6
T92 82-87 Protein denotes NFAT5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T415 82-87 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T419 22-27 http://www.uniprot.org/uniprot/Q99836 denotes MyD88
T420 40-45 http://www.uniprot.org/uniprot/Q9Y4K3 denotes TRAF6

GO-BP

Id Subject Object Predicate Lexical cue
T106 88-103 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression
T101 2-11 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling

simple1

Id Subject Object Predicate Lexical cue
T172 22-27 Protein denotes MyD88
T173 29-34 Protein denotes IRAK1
T174 40-45 Protein denotes TRAF6
T175 82-87 Protein denotes NFAT5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T759 22-27 Protein denotes MyD88
T760 29-34 Protein denotes IRAK1
T761 40-45 Protein denotes TRAF6
T762 82-87 Protein denotes NFAT5
T772 70-81 Positive_regulation denotes MTb-induced
T773 61-69 Negative_regulation denotes inhibits
T774 93-103 Gene_expression denotes expression
R587 T762 T774 themeOf NFAT5,expression
R593 T774 T773 themeOf expression,inhibits
R594 T774 T772 themeOf expression,MTb-induced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T445 22-27 Protein denotes MyD88
T446 29-34 Protein denotes IRAK1
T447 40-45 Protein denotes TRAF6
T448 82-87 Protein denotes NFAT5
T458 93-103 Gene_expression denotes expression
T459 61-69 Negative_regulation denotes inhibits
T460 70-81 Positive_regulation denotes MTb-induced
R512 T448 T458 themeOf NFAT5,expression
R520 T458 T459 themeOf expression,inhibits
R521 T458 T460 themeOf expression,MTb-induced

DLUT931

Id Subject Object Predicate Lexical cue
T437 61-69 Negative_regulation denotes inhibits
T436 70-81 Positive_regulation denotes MTb-induced
T435 93-103 Gene_expression denotes expression
T425 22-27 Protein denotes MyD88
T426 29-34 Protein denotes IRAK1
T427 40-45 Protein denotes TRAF6
T428 82-87 Protein denotes NFAT5
R241 T435 T436 themeOf expression,MTb-induced
R242 T436 T437 themeOf MTb-induced,inhibits
R504 T428 T435 themeOf NFAT5,expression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T820 22-103 Negative_regulation denotes MyD88, IRAK1, and TRAF6, significantly inhibits MTb-induced NFAT5 gene expression
T817 70-103 Gene_expression denotes MTb-induced NFAT5 gene expression
T808 12-21 Entity denotes molecules
T781 22-46 Protein denotes MyD88, IRAK1, and TRAF6,
T792 29-35 Protein denotes IRAK1,
T794 82-87 Protein denotes NFAT5
T801 70-81 Protein denotes MTb-induced
T802 40-45 Protein denotes TRAF6
R457 T817 T820 themeOf MTb-induced NFAT5 gene expression,"MyD88, IRAK1, and TRAF6, significantly inhibits MTb-induced NFAT5 gene expression"
R597 T781 T820 causeOf "MyD88, IRAK1, and TRAF6,","MyD88, IRAK1, and TRAF6, significantly inhibits MTb-induced NFAT5 gene expression"
R602 T794 T817 themeOf NFAT5,MTb-induced NFAT5 gene expression

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T702 115-121 NN denotes innate
T701 111-114 DT denotes the
T700 109-110 , denotes ,
T699 105-109 RB denotes Thus
T698 103-104 . denotes .
T697 93-103 NN denotes expression
T696 88-92 NN denotes gene
T695 82-87 CD denotes NFAT5
T694 70-81 JJ denotes MTb-induced
T693 61-69 VBZ denotes inhibits
T692 47-60 RB denotes significantly
T691 45-46 , denotes ,
T690 40-45 NNP denotes TRAF6
T689 36-39 CC denotes and
T688 34-35 , denotes ,
T687 29-34 NNP denotes IRAK1
T686 27-28 , denotes ,
T685 22-27 NNP denotes MyD88
T684 12-21 NNS denotes molecules
T683 2-11 VBG denotes signaling
R382 T683 T684 amod signaling,molecules
R385 T686 T685 punct ",",MyD88
R386 T687 T685 conj IRAK1,MyD88
R387 T688 T687 punct ",",IRAK1
R388 T689 T687 cc and,IRAK1
R389 T690 T687 conj TRAF6,IRAK1
R390 T691 T693 punct ",",inhibits
R391 T692 T693 advmod significantly,inhibits
R392 T693 T693 ROOT inhibits,inhibits
R393 T694 T697 amod MTb-induced,expression
R394 T695 T697 nummod NFAT5,expression
R395 T696 T697 compound gene,expression
R396 T697 T693 dobj expression,inhibits
R397 T698 T693 punct .,inhibits

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T148 61-69 Negative_regulation denotes inhibits
T147 61-69 Negative_regulation denotes inhibits
T146 61-69 Negative_regulation denotes inhibits
T145 70-81 Positive_regulation denotes MTb-induced
T144 93-103 Gene_expression denotes expression
T140 82-92 Protein denotes NFAT5 gene
T139 40-45 Protein denotes TRAF6
T138 29-34 Protein denotes IRAK1
T137 22-27 Protein denotes MyD88
R26 T140 T144 themeOf NFAT5 gene,expression
R30 T144 T145 themeOf expression,MTb-induced
R31 T145 T146 themeOf MTb-induced,inhibits
R32 T145 T147 themeOf MTb-induced,inhibits
R33 T145 T148 themeOf MTb-induced,inhibits

testone

Id Subject Object Predicate Lexical cue
T28 93-103 Gene_expression denotes expression
T27 74-81 Positive_regulation denotes induced
T26 61-69 Negative_regulation denotes inhibits
T19 82-87 Protein denotes NFAT5
T18 40-45 Protein denotes TRAF6
T17 29-34 Protein denotes IRAK1
T16 22-27 Protein denotes MyD88
R3 T18 T26 causeOf TRAF6,inhibits
R4 T19 T28 themeOf NFAT5,expression
R8 T27 T26 themeOf induced,inhibits
R9 T28 T27 themeOf expression,induced
R2 T17 T26 causeOf IRAK1,inhibits

test3

Id Subject Object Predicate Lexical cue
T39 82-87 Protein denotes NFAT5
T38 40-45 Protein denotes TRAF6
T37 29-34 Protein denotes IRAK1
T36 22-27 Protein denotes MyD88
T51 82-87 Protein denotes NFAT5
T50 40-45 Protein denotes TRAF6
T49 29-34 Protein denotes IRAK1
T48 22-27 Protein denotes MyD88