PMC:3320587 / 1069-1274 JSONTXT

{"project":"pmc-enju-pas","denotations":[{"id":"T371","span":{"begin":193,"end":200},"obj":"NN"},{"id":"T370","span":{"begin":189,"end":192},"obj":"CC"},{"id":"T369","span":{"begin":184,"end":188},"obj":"NN"},{"id":"T368","span":{"begin":178,"end":183},"obj":"NN"},{"id":"T367","span":{"begin":170,"end":177},"obj":"VB"},{"id":"T366","span":{"begin":160,"end":169},"obj":"NN"},{"id":"T365","span":{"begin":156,"end":159},"obj":"NN"},{"id":"T364","span":{"begin":153,"end":155},"obj":"TO"},{"id":"T363","span":{"begin":144,"end":152},"obj":"NN"},{"id":"T362","span":{"begin":137,"end":143},"obj":"JJ"},{"id":"T361","span":{"begin":130,"end":136},"obj":"JJ"},{"id":"T360","span":{"begin":126,"end":129},"obj":"DT"},{"id":"T359","span":{"begin":124,"end":125},"obj":"-COMMA-"},{"id":"T358","span":{"begin":120,"end":124},"obj":"RB"},{"id":"T357","span":{"begin":108,"end":118},"obj":"NN"},{"id":"T356","span":{"begin":103,"end":107},"obj":"NN"},{"id":"T355","span":{"begin":97,"end":102},"obj":"NN"},{"id":"T354","span":{"begin":85,"end":96},"obj":"JJ"},{"id":"T353","span":{"begin":76,"end":84},"obj":"VB"},{"id":"T352","span":{"begin":62,"end":75},"obj":"RB"},{"id":"T351","span":{"begin":60,"end":61},"obj":"-COMMA-"},{"id":"T350","span":{"begin":55,"end":60},"obj":"NN"},{"id":"T349","span":{"begin":51,"end":54},"obj":"CC"},{"id":"T348","span":{"begin":49,"end":50},"obj":"-COMMA-"},{"id":"T347","span":{"begin":44,"end":49},"obj":"NN"},{"id":"T346","span":{"begin":42,"end":43},"obj":"-COMMA-"},{"id":"T345","span":{"begin":37,"end":42},"obj":"NN"},{"id":"T344","span":{"begin":27,"end":36},"obj":"NN"},{"id":"T343","span":{"begin":17,"end":26},"obj":"VB"},{"id":"T342","span":{"begin":6,"end":16},"obj":"JJ"},{"id":"T341","span":{"begin":2,"end":5},"obj":"DT"}],"relations":[{"id":"R170","pred":"arg1Of","subj":"T344","obj":"T341"},{"id":"R171","pred":"arg1Of","subj":"T344","obj":"T342"},{"id":"R172","pred":"arg1Of","subj":"T344","obj":"T343"},{"id":"R173","pred":"arg1Of","subj":"T345","obj":"T346"},{"id":"R174","pred":"arg1Of","subj":"T346","obj":"T349"},{"id":"R175","pred":"arg2Of","subj":"T347","obj":"T346"},{"id":"R177","pred":"arg1Of","subj":"T349","obj":"T344"},{"id":"R178","pred":"arg1Of","subj":"T349","obj":"T348"},{"id":"R179","pred":"arg2Of","subj":"T350","obj":"T349"},{"id":"R182","pred":"arg1Of","subj":"T353","obj":"T351"},{"id":"R183","pred":"arg1Of","subj":"T353","obj":"T352"},{"id":"R184","pred":"arg2Of","subj":"T357","obj":"T353"},{"id":"R185","pred":"arg1Of","subj":"T357","obj":"T354"},{"id":"R186","pred":"arg1Of","subj":"T357","obj":"T355"},{"id":"R187","pred":"arg1Of","subj":"T357","obj":"T356"},{"id":"R188","pred":"arg1Of","subj":"T363","obj":"T360"},{"id":"R189","pred":"arg1Of","subj":"T363","obj":"T361"},{"id":"R190","pred":"arg1Of","subj":"T363","obj":"T362"},{"id":"R191","pred":"arg1Of","subj":"T363","obj":"T364"},{"id":"R192","pred":"arg1Of","subj":"T363","obj":"T367"},{"id":"R193","pred":"arg2Of","subj":"T366","obj":"T364"},{"id":"R194","pred":"arg1Of","subj":"T366","obj":"T365"},{"id":"R195","pred":"arg1Of","subj":"T367","obj":"T358"},{"id":"R196","pred":"arg1Of","subj":"T367","obj":"T359"},{"id":"R198","pred":"arg1Of","subj":"T369","obj":"T370"},{"id":"R199","pred":"arg2Of","subj":"T371","obj":"T370"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"g the downstream signaling molecules MyD88, IRAK1, and TRAF6, significantly inhibits MTb-induced NFAT5 gene expression. Thus, the innate immune response to MTb infection induces NFAT5 gene and protein expr"}

{"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T89","span":{"begin":37,"end":42},"obj":"Protein"},{"id":"T90","span":{"begin":44,"end":49},"obj":"Protein"},{"id":"T91","span":{"begin":55,"end":60},"obj":"Protein"},{"id":"T92","span":{"begin":97,"end":102},"obj":"Protein"},{"id":"T93","span":{"begin":178,"end":183},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"g the downstream signaling molecules MyD88, IRAK1, and TRAF6, significantly inhibits MTb-induced NFAT5 gene expression. Thus, the innate immune response to MTb infection induces NFAT5 gene and protein expr"}

{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T415","span":{"begin":97,"end":102},"obj":"http://www.uniprot.org/uniprot/O94916"},{"id":"T416","span":{"begin":178,"end":183},"obj":"http://www.uniprot.org/uniprot/O94916"},{"id":"T419","span":{"begin":37,"end":42},"obj":"http://www.uniprot.org/uniprot/Q99836"},{"id":"T420","span":{"begin":55,"end":60},"obj":"http://www.uniprot.org/uniprot/Q9Y4K3"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"g the downstream signaling molecules MyD88, IRAK1, and TRAF6, significantly inhibits MTb-induced NFAT5 gene expression. Thus, the innate immune response to MTb infection induces NFAT5 gene and protein expr"}

{"project":"GO-BP","denotations":[{"id":"T111","span":{"begin":130,"end":152},"obj":"http://purl.obolibrary.org/obo/GO_0002218"},{"id":"T110","span":{"begin":130,"end":152},"obj":"http://purl.obolibrary.org/obo/GO_0045088"},{"id":"T109","span":{"begin":130,"end":152},"obj":"http://purl.obolibrary.org/obo/GO_0002227"},{"id":"T108","span":{"begin":130,"end":152},"obj":"http://purl.obolibrary.org/obo/GO_0045087"},{"id":"T106","span":{"begin":103,"end":118},"obj":"http://purl.obolibrary.org/obo/GO_0010467"},{"id":"T101","span":{"begin":17,"end":26},"obj":"http://purl.obolibrary.org/obo/GO_0023052"},{"id":"T114","span":{"begin":137,"end":152},"obj":"http://purl.obolibrary.org/obo/GO_0006955"},{"id":"T113","span":{"begin":130,"end":152},"obj":"http://purl.obolibrary.org/obo/GO_0045824"},{"id":"T112","span":{"begin":130,"end":152},"obj":"http://purl.obolibrary.org/obo/GO_0045089"}],"text":"g the downstream signaling molecules MyD88, IRAK1, and TRAF6, significantly inhibits MTb-induced NFAT5 gene expression. Thus, the innate immune response to MTb infection induces NFAT5 gene and protein expr"}

{"project":"simple1","denotations":[{"id":"T172","span":{"begin":37,"end":42},"obj":"Protein"},{"id":"T173","span":{"begin":44,"end":49},"obj":"Protein"},{"id":"T174","span":{"begin":55,"end":60},"obj":"Protein"},{"id":"T175","span":{"begin":97,"end":102},"obj":"Protein"},{"id":"T176","span":{"begin":178,"end":183},"obj":"Protein"}],"text":"g the downstream signaling molecules MyD88, IRAK1, and TRAF6, significantly inhibits MTb-induced NFAT5 gene expression. Thus, the innate immune response to MTb infection induces NFAT5 gene and protein expr"}

{"project":"BioNLP16_DUT","denotations":[{"id":"T759","span":{"begin":37,"end":42},"obj":"Protein"},{"id":"T760","span":{"begin":44,"end":49},"obj":"Protein"},{"id":"T761","span":{"begin":55,"end":60},"obj":"Protein"},{"id":"T762","span":{"begin":97,"end":102},"obj":"Protein"},{"id":"T764","span":{"begin":178,"end":183},"obj":"Protein"},{"id":"T772","span":{"begin":85,"end":96},"obj":"Positive_regulation"},{"id":"T773","span":{"begin":76,"end":84},"obj":"Negative_regulation"},{"id":"T774","span":{"begin":108,"end":118},"obj":"Gene_expression"},{"id":"T775","span":{"begin":170,"end":177},"obj":"Positive_regulation"}],"relations":[{"id":"R587","pred":"themeOf","subj":"T762","obj":"T774"},{"id":"R589","pred":"themeOf","subj":"T764","obj":"T775"},{"id":"R593","pred":"themeOf","subj":"T774","obj":"T773"},{"id":"R594","pred":"themeOf","subj":"T774","obj":"T772"}],"text":"g the downstream signaling molecules MyD88, IRAK1, and TRAF6, significantly inhibits MTb-induced NFAT5 gene expression. Thus, the innate immune response to MTb infection induces NFAT5 gene and protein expr"}

{"project":"BioNLP16_Messiy","denotations":[{"id":"T445","span":{"begin":37,"end":42},"obj":"Protein"},{"id":"T446","span":{"begin":44,"end":49},"obj":"Protein"},{"id":"T447","span":{"begin":55,"end":60},"obj":"Protein"},{"id":"T448","span":{"begin":97,"end":102},"obj":"Protein"},{"id":"T450","span":{"begin":178,"end":183},"obj":"Protein"},{"id":"T458","span":{"begin":108,"end":118},"obj":"Gene_expression"},{"id":"T459","span":{"begin":76,"end":84},"obj":"Negative_regulation"},{"id":"T460","span":{"begin":85,"end":96},"obj":"Positive_regulation"},{"id":"T463","span":{"begin":170,"end":177},"obj":"Positive_regulation"}],"relations":[{"id":"R512","pred":"themeOf","subj":"T448","obj":"T458"},{"id":"R514","pred":"themeOf","subj":"T450","obj":"T463"},{"id":"R520","pred":"themeOf","subj":"T458","obj":"T459"},{"id":"R521","pred":"themeOf","subj":"T458","obj":"T460"}],"text":"g the downstream signaling molecules MyD88, IRAK1, and TRAF6, significantly inhibits MTb-induced NFAT5 gene expression. Thus, the innate immune response to MTb infection induces NFAT5 gene and protein expr"}

{"project":"DLUT931","denotations":[{"id":"T440","span":{"begin":170,"end":177},"obj":"Positive_regulation"},{"id":"T437","span":{"begin":76,"end":84},"obj":"Negative_regulation"},{"id":"T436","span":{"begin":85,"end":96},"obj":"Positive_regulation"},{"id":"T435","span":{"begin":108,"end":118},"obj":"Gene_expression"},{"id":"T425","span":{"begin":37,"end":42},"obj":"Protein"},{"id":"T426","span":{"begin":44,"end":49},"obj":"Protein"},{"id":"T427","span":{"begin":55,"end":60},"obj":"Protein"},{"id":"T428","span":{"begin":97,"end":102},"obj":"Protein"},{"id":"T430","span":{"begin":178,"end":183},"obj":"Protein"}],"relations":[{"id":"R241","pred":"themeOf","subj":"T435","obj":"T436"},{"id":"R242","pred":"themeOf","subj":"T436","obj":"T437"},{"id":"R504","pred":"themeOf","subj":"T428","obj":"T435"}],"text":"g the downstream signaling molecules MyD88, IRAK1, and TRAF6, significantly inhibits MTb-induced NFAT5 gene expression. Thus, the innate immune response to MTb infection induces NFAT5 gene and protein expr"}

{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T822","span":{"begin":156,"end":169},"obj":"Regulation"},{"id":"T820","span":{"begin":37,"end":118},"obj":"Negative_regulation"},{"id":"T817","span":{"begin":85,"end":118},"obj":"Gene_expression"},{"id":"T808","span":{"begin":27,"end":36},"obj":"Entity"},{"id":"T778","span":{"begin":178,"end":183},"obj":"Protein"},{"id":"T779","span":{"begin":156,"end":159},"obj":"Protein"},{"id":"T781","span":{"begin":37,"end":61},"obj":"Protein"},{"id":"T784","span":{"begin":178,"end":188},"obj":"Protein"},{"id":"T792","span":{"begin":44,"end":50},"obj":"Protein"},{"id":"T793","span":{"begin":193,"end":200},"obj":"Protein"},{"id":"T794","span":{"begin":97,"end":102},"obj":"Protein"},{"id":"T801","span":{"begin":85,"end":96},"obj":"Protein"},{"id":"T802","span":{"begin":55,"end":60},"obj":"Protein"}],"relations":[{"id":"R457","pred":"themeOf","subj":"T817","obj":"T820"},{"id":"R596","pred":"themeOf","subj":"T779","obj":"T822"},{"id":"R597","pred":"causeOf","subj":"T781","obj":"T820"},{"id":"R602","pred":"themeOf","subj":"T794","obj":"T817"}],"text":"g the downstream signaling molecules MyD88, IRAK1, and TRAF6, significantly inhibits MTb-induced NFAT5 gene expression. Thus, the innate immune response to MTb infection induces NFAT5 gene and protein expr"}

{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T712","span":{"begin":193,"end":200},"obj":"NN"},{"id":"T711","span":{"begin":189,"end":192},"obj":"CC"},{"id":"T710","span":{"begin":184,"end":188},"obj":"NN"},{"id":"T709","span":{"begin":178,"end":183},"obj":"NNP"},{"id":"T708","span":{"begin":170,"end":177},"obj":"VBZ"},{"id":"T707","span":{"begin":160,"end":169},"obj":"NN"},{"id":"T706","span":{"begin":156,"end":159},"obj":"NNP"},{"id":"T705","span":{"begin":153,"end":155},"obj":"TO"},{"id":"T704","span":{"begin":144,"end":152},"obj":"NN"},{"id":"T703","span":{"begin":137,"end":143},"obj":"JJ"},{"id":"T702","span":{"begin":130,"end":136},"obj":"NN"},{"id":"T701","span":{"begin":126,"end":129},"obj":"DT"},{"id":"T700","span":{"begin":124,"end":125},"obj":","},{"id":"T699","span":{"begin":120,"end":124},"obj":"RB"},{"id":"T698","span":{"begin":118,"end":119},"obj":"."},{"id":"T697","span":{"begin":108,"end":118},"obj":"NN"},{"id":"T696","span":{"begin":103,"end":107},"obj":"NN"},{"id":"T695","span":{"begin":97,"end":102},"obj":"CD"},{"id":"T694","span":{"begin":85,"end":96},"obj":"JJ"},{"id":"T693","span":{"begin":76,"end":84},"obj":"VBZ"},{"id":"T692","span":{"begin":62,"end":75},"obj":"RB"},{"id":"T691","span":{"begin":60,"end":61},"obj":","},{"id":"T690","span":{"begin":55,"end":60},"obj":"NNP"},{"id":"T689","span":{"begin":51,"end":54},"obj":"CC"},{"id":"T688","span":{"begin":49,"end":50},"obj":","},{"id":"T687","span":{"begin":44,"end":49},"obj":"NNP"},{"id":"T686","span":{"begin":42,"end":43},"obj":","},{"id":"T685","span":{"begin":37,"end":42},"obj":"NNP"},{"id":"T684","span":{"begin":27,"end":36},"obj":"NNS"},{"id":"T683","span":{"begin":17,"end":26},"obj":"VBG"},{"id":"T681","span":{"begin":2,"end":5},"obj":"DT"},{"id":"T682","span":{"begin":6,"end":16},"obj":"JJ"}],"relations":[{"id":"R382","pred":"amod","subj":"T683","obj":"T684"},{"id":"R385","pred":"punct","subj":"T686","obj":"T685"},{"id":"R386","pred":"conj","subj":"T687","obj":"T685"},{"id":"R387","pred":"punct","subj":"T688","obj":"T687"},{"id":"R388","pred":"cc","subj":"T689","obj":"T687"},{"id":"R389","pred":"conj","subj":"T690","obj":"T687"},{"id":"R390","pred":"punct","subj":"T691","obj":"T693"},{"id":"R391","pred":"advmod","subj":"T692","obj":"T693"},{"id":"R392","pred":"ROOT","subj":"T693","obj":"T693"},{"id":"R393","pred":"amod","subj":"T694","obj":"T697"},{"id":"R394","pred":"nummod","subj":"T695","obj":"T697"},{"id":"R395","pred":"compound","subj":"T696","obj":"T697"},{"id":"R396","pred":"dobj","subj":"T697","obj":"T693"},{"id":"R397","pred":"punct","subj":"T698","obj":"T693"},{"id":"R398","pred":"advmod","subj":"T699","obj":"T708"},{"id":"R399","pred":"punct","subj":"T700","obj":"T708"},{"id":"R400","pred":"det","subj":"T701","obj":"T704"},{"id":"R401","pred":"amod","subj":"T702","obj":"T704"},{"id":"R402","pred":"amod","subj":"T703","obj":"T704"},{"id":"R403","pred":"nsubj","subj":"T704","obj":"T708"},{"id":"R404","pred":"prep","subj":"T705","obj":"T704"},{"id":"R405","pred":"compound","subj":"T706","obj":"T707"},{"id":"R406","pred":"pobj","subj":"T707","obj":"T705"},{"id":"R407","pred":"ROOT","subj":"T708","obj":"T708"},{"id":"R408","pred":"compound","subj":"T709","obj":"T710"},{"id":"R409","pred":"dobj","subj":"T710","obj":"T708"},{"id":"R410","pred":"cc","subj":"T711","obj":"T710"},{"id":"R579","pred":"det","subj":"T681","obj":"T684"},{"id":"R580","pred":"amod","subj":"T682","obj":"T684"}],"text":"g the downstream signaling molecules MyD88, IRAK1, and TRAF6, significantly inhibits MTb-induced NFAT5 gene expression. Thus, the innate immune response to MTb infection induces NFAT5 gene and protein expr"}

{"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T154","span":{"begin":170,"end":177},"obj":"Positive_regulation"},{"id":"T149","span":{"begin":178,"end":188},"obj":"Protein"},{"id":"T148","span":{"begin":76,"end":84},"obj":"Negative_regulation"},{"id":"T147","span":{"begin":76,"end":84},"obj":"Negative_regulation"},{"id":"T146","span":{"begin":76,"end":84},"obj":"Negative_regulation"},{"id":"T145","span":{"begin":85,"end":96},"obj":"Positive_regulation"},{"id":"T144","span":{"begin":108,"end":118},"obj":"Gene_expression"},{"id":"T140","span":{"begin":97,"end":107},"obj":"Protein"},{"id":"T139","span":{"begin":55,"end":60},"obj":"Protein"},{"id":"T138","span":{"begin":44,"end":49},"obj":"Protein"},{"id":"T137","span":{"begin":37,"end":42},"obj":"Protein"}],"relations":[{"id":"R26","pred":"themeOf","subj":"T140","obj":"T144"},{"id":"R30","pred":"themeOf","subj":"T144","obj":"T145"},{"id":"R31","pred":"themeOf","subj":"T145","obj":"T146"},{"id":"R32","pred":"themeOf","subj":"T145","obj":"T147"},{"id":"R33","pred":"themeOf","subj":"T145","obj":"T148"}],"text":"g the downstream signaling molecules MyD88, IRAK1, and TRAF6, significantly inhibits MTb-induced NFAT5 gene expression. Thus, the innate immune response to MTb infection induces NFAT5 gene and protein expr"}

{"project":"testone","denotations":[{"id":"T29","span":{"begin":170,"end":177},"obj":"Positive_regulation"},{"id":"T28","span":{"begin":108,"end":118},"obj":"Gene_expression"},{"id":"T27","span":{"begin":89,"end":96},"obj":"Positive_regulation"},{"id":"T26","span":{"begin":76,"end":84},"obj":"Negative_regulation"},{"id":"T20","span":{"begin":178,"end":183},"obj":"Protein"},{"id":"T19","span":{"begin":97,"end":102},"obj":"Protein"},{"id":"T18","span":{"begin":55,"end":60},"obj":"Protein"},{"id":"T17","span":{"begin":44,"end":49},"obj":"Protein"},{"id":"T16","span":{"begin":37,"end":42},"obj":"Protein"}],"relations":[{"id":"R3","pred":"causeOf","subj":"T18","obj":"T26"},{"id":"R4","pred":"themeOf","subj":"T19","obj":"T28"},{"id":"R8","pred":"themeOf","subj":"T27","obj":"T26"},{"id":"R9","pred":"themeOf","subj":"T28","obj":"T27"},{"id":"R2","pred":"causeOf","subj":"T17","obj":"T26"}],"text":"g the downstream signaling molecules MyD88, IRAK1, and TRAF6, significantly inhibits MTb-induced NFAT5 gene expression. Thus, the innate immune response to MTb infection induces NFAT5 gene and protein expr"}

{"project":"test3","denotations":[{"id":"T40","span":{"begin":178,"end":183},"obj":"Protein"},{"id":"T39","span":{"begin":97,"end":102},"obj":"Protein"},{"id":"T38","span":{"begin":55,"end":60},"obj":"Protein"},{"id":"T37","span":{"begin":44,"end":49},"obj":"Protein"},{"id":"T36","span":{"begin":37,"end":42},"obj":"Protein"},{"id":"T52","span":{"begin":178,"end":183},"obj":"Protein"},{"id":"T51","span":{"begin":97,"end":102},"obj":"Protein"},{"id":"T50","span":{"begin":55,"end":60},"obj":"Protein"},{"id":"T49","span":{"begin":44,"end":49},"obj":"Protein"},{"id":"T48","span":{"begin":37,"end":42},"obj":"Protein"}],"text":"g the downstream signaling molecules MyD88, IRAK1, and TRAF6, significantly inhibits MTb-induced NFAT5 gene expression. Thus, the innate immune response to MTb infection induces NFAT5 gene and protein expr"}