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PMC:3320587 / 1069-1274 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T371 193-200 NN denotes protein
T370 189-192 CC denotes and
T369 184-188 NN denotes gene
T368 178-183 NN denotes NFAT5
T367 170-177 VB denotes induces
T366 160-169 NN denotes infection
T365 156-159 NN denotes MTb
T364 153-155 TO denotes to
T363 144-152 NN denotes response
T362 137-143 JJ denotes immune
T361 130-136 JJ denotes innate
T360 126-129 DT denotes the
T359 124-125 -COMMA- denotes ,
T358 120-124 RB denotes Thus
T357 108-118 NN denotes expression
T356 103-107 NN denotes gene
T355 97-102 NN denotes NFAT5
T354 85-96 JJ denotes MTb-induced
T353 76-84 VB denotes inhibits
T352 62-75 RB denotes significantly
T351 60-61 -COMMA- denotes ,
T350 55-60 NN denotes TRAF6
T349 51-54 CC denotes and
T348 49-50 -COMMA- denotes ,
T347 44-49 NN denotes IRAK1
T346 42-43 -COMMA- denotes ,
T345 37-42 NN denotes MyD88
T344 27-36 NN denotes molecules
T343 17-26 VB denotes signaling
T342 6-16 JJ denotes downstream
T341 2-5 DT denotes the
R170 T344 T341 arg1Of molecules,the
R171 T344 T342 arg1Of molecules,downstream
R172 T344 T343 arg1Of molecules,signaling
R173 T345 T346 arg1Of MyD88,","
R174 T346 T349 arg1Of ",",and
R175 T347 T346 arg2Of IRAK1,","
R177 T349 T344 arg1Of and,molecules
R178 T349 T348 arg1Of and,","
R179 T350 T349 arg2Of TRAF6,and
R182 T353 T351 arg1Of inhibits,","
R183 T353 T352 arg1Of inhibits,significantly
R184 T357 T353 arg2Of expression,inhibits
R185 T357 T354 arg1Of expression,MTb-induced
R186 T357 T355 arg1Of expression,NFAT5
R187 T357 T356 arg1Of expression,gene
R188 T363 T360 arg1Of response,the
R189 T363 T361 arg1Of response,innate
R190 T363 T362 arg1Of response,immune
R191 T363 T364 arg1Of response,to
R192 T363 T367 arg1Of response,induces
R193 T366 T364 arg2Of infection,to
R194 T366 T365 arg1Of infection,MTb
R195 T367 T358 arg1Of induces,Thus
R196 T367 T359 arg1Of induces,","
R198 T369 T370 arg1Of gene,and
R199 T371 T370 arg2Of protein,and

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T89 37-42 Protein denotes MyD88
T90 44-49 Protein denotes IRAK1
T91 55-60 Protein denotes TRAF6
T92 97-102 Protein denotes NFAT5
T93 178-183 Protein denotes NFAT5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T415 97-102 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T416 178-183 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T419 37-42 http://www.uniprot.org/uniprot/Q99836 denotes MyD88
T420 55-60 http://www.uniprot.org/uniprot/Q9Y4K3 denotes TRAF6

GO-BP

Id Subject Object Predicate Lexical cue
T111 130-152 http://purl.obolibrary.org/obo/GO_0002218 denotes innate immune response
T110 130-152 http://purl.obolibrary.org/obo/GO_0045088 denotes innate immune response
T109 130-152 http://purl.obolibrary.org/obo/GO_0002227 denotes innate immune response
T108 130-152 http://purl.obolibrary.org/obo/GO_0045087 denotes innate immune response
T106 103-118 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression
T101 17-26 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T114 137-152 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T113 130-152 http://purl.obolibrary.org/obo/GO_0045824 denotes innate immune response
T112 130-152 http://purl.obolibrary.org/obo/GO_0045089 denotes innate immune response

simple1

Id Subject Object Predicate Lexical cue
T172 37-42 Protein denotes MyD88
T173 44-49 Protein denotes IRAK1
T174 55-60 Protein denotes TRAF6
T175 97-102 Protein denotes NFAT5
T176 178-183 Protein denotes NFAT5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T759 37-42 Protein denotes MyD88
T760 44-49 Protein denotes IRAK1
T761 55-60 Protein denotes TRAF6
T762 97-102 Protein denotes NFAT5
T764 178-183 Protein denotes NFAT5
T772 85-96 Positive_regulation denotes MTb-induced
T773 76-84 Negative_regulation denotes inhibits
T774 108-118 Gene_expression denotes expression
T775 170-177 Positive_regulation denotes induces
R587 T762 T774 themeOf NFAT5,expression
R589 T764 T775 themeOf NFAT5,induces
R593 T774 T773 themeOf expression,inhibits
R594 T774 T772 themeOf expression,MTb-induced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T445 37-42 Protein denotes MyD88
T446 44-49 Protein denotes IRAK1
T447 55-60 Protein denotes TRAF6
T448 97-102 Protein denotes NFAT5
T450 178-183 Protein denotes NFAT5
T458 108-118 Gene_expression denotes expression
T459 76-84 Negative_regulation denotes inhibits
T460 85-96 Positive_regulation denotes MTb-induced
T463 170-177 Positive_regulation denotes induces
R512 T448 T458 themeOf NFAT5,expression
R514 T450 T463 themeOf NFAT5,induces
R520 T458 T459 themeOf expression,inhibits
R521 T458 T460 themeOf expression,MTb-induced

DLUT931

Id Subject Object Predicate Lexical cue
T440 170-177 Positive_regulation denotes induces
T437 76-84 Negative_regulation denotes inhibits
T436 85-96 Positive_regulation denotes MTb-induced
T435 108-118 Gene_expression denotes expression
T425 37-42 Protein denotes MyD88
T426 44-49 Protein denotes IRAK1
T427 55-60 Protein denotes TRAF6
T428 97-102 Protein denotes NFAT5
T430 178-183 Protein denotes NFAT5
R241 T435 T436 themeOf expression,MTb-induced
R242 T436 T437 themeOf MTb-induced,inhibits
R504 T428 T435 themeOf NFAT5,expression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T822 156-169 Regulation denotes MTb infection
T820 37-118 Negative_regulation denotes MyD88, IRAK1, and TRAF6, significantly inhibits MTb-induced NFAT5 gene expression
T817 85-118 Gene_expression denotes MTb-induced NFAT5 gene expression
T808 27-36 Entity denotes molecules
T778 178-183 Protein denotes NFAT5
T779 156-159 Protein denotes MTb
T781 37-61 Protein denotes MyD88, IRAK1, and TRAF6,
T784 178-188 Protein denotes NFAT5 gene
T792 44-50 Protein denotes IRAK1,
T793 193-200 Protein denotes protein
T794 97-102 Protein denotes NFAT5
T801 85-96 Protein denotes MTb-induced
T802 55-60 Protein denotes TRAF6
R457 T817 T820 themeOf MTb-induced NFAT5 gene expression,"MyD88, IRAK1, and TRAF6, significantly inhibits MTb-induced NFAT5 gene expression"
R596 T779 T822 themeOf MTb,MTb infection
R597 T781 T820 causeOf "MyD88, IRAK1, and TRAF6,","MyD88, IRAK1, and TRAF6, significantly inhibits MTb-induced NFAT5 gene expression"
R602 T794 T817 themeOf NFAT5,MTb-induced NFAT5 gene expression

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T712 193-200 NN denotes protein
T711 189-192 CC denotes and
T710 184-188 NN denotes gene
T709 178-183 NNP denotes NFAT5
T708 170-177 VBZ denotes induces
T707 160-169 NN denotes infection
T706 156-159 NNP denotes MTb
T705 153-155 TO denotes to
T704 144-152 NN denotes response
T703 137-143 JJ denotes immune
T702 130-136 NN denotes innate
T701 126-129 DT denotes the
T700 124-125 , denotes ,
T699 120-124 RB denotes Thus
T698 118-119 . denotes .
T697 108-118 NN denotes expression
T696 103-107 NN denotes gene
T695 97-102 CD denotes NFAT5
T694 85-96 JJ denotes MTb-induced
T693 76-84 VBZ denotes inhibits
T692 62-75 RB denotes significantly
T691 60-61 , denotes ,
T690 55-60 NNP denotes TRAF6
T689 51-54 CC denotes and
T688 49-50 , denotes ,
T687 44-49 NNP denotes IRAK1
T686 42-43 , denotes ,
T685 37-42 NNP denotes MyD88
T684 27-36 NNS denotes molecules
T683 17-26 VBG denotes signaling
T681 2-5 DT denotes the
T682 6-16 JJ denotes downstream
R382 T683 T684 amod signaling,molecules
R385 T686 T685 punct ",",MyD88
R386 T687 T685 conj IRAK1,MyD88
R387 T688 T687 punct ",",IRAK1
R388 T689 T687 cc and,IRAK1
R389 T690 T687 conj TRAF6,IRAK1
R390 T691 T693 punct ",",inhibits
R391 T692 T693 advmod significantly,inhibits
R392 T693 T693 ROOT inhibits,inhibits
R393 T694 T697 amod MTb-induced,expression
R394 T695 T697 nummod NFAT5,expression
R395 T696 T697 compound gene,expression
R396 T697 T693 dobj expression,inhibits
R397 T698 T693 punct .,inhibits
R398 T699 T708 advmod Thus,induces
R399 T700 T708 punct ",",induces
R400 T701 T704 det the,response
R401 T702 T704 amod innate,response
R402 T703 T704 amod immune,response
R403 T704 T708 nsubj response,induces
R404 T705 T704 prep to,response
R405 T706 T707 compound MTb,infection
R406 T707 T705 pobj infection,to
R407 T708 T708 ROOT induces,induces
R408 T709 T710 compound NFAT5,gene
R409 T710 T708 dobj gene,induces
R410 T711 T710 cc and,gene
R579 T681 T684 det the,molecules
R580 T682 T684 amod downstream,molecules

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T154 170-177 Positive_regulation denotes induces
T149 178-188 Protein denotes NFAT5 gene
T148 76-84 Negative_regulation denotes inhibits
T147 76-84 Negative_regulation denotes inhibits
T146 76-84 Negative_regulation denotes inhibits
T145 85-96 Positive_regulation denotes MTb-induced
T144 108-118 Gene_expression denotes expression
T140 97-107 Protein denotes NFAT5 gene
T139 55-60 Protein denotes TRAF6
T138 44-49 Protein denotes IRAK1
T137 37-42 Protein denotes MyD88
R26 T140 T144 themeOf NFAT5 gene,expression
R30 T144 T145 themeOf expression,MTb-induced
R31 T145 T146 themeOf MTb-induced,inhibits
R32 T145 T147 themeOf MTb-induced,inhibits
R33 T145 T148 themeOf MTb-induced,inhibits

testone

Id Subject Object Predicate Lexical cue
T29 170-177 Positive_regulation denotes induces
T28 108-118 Gene_expression denotes expression
T27 89-96 Positive_regulation denotes induced
T26 76-84 Negative_regulation denotes inhibits
T20 178-183 Protein denotes NFAT5
T19 97-102 Protein denotes NFAT5
T18 55-60 Protein denotes TRAF6
T17 44-49 Protein denotes IRAK1
T16 37-42 Protein denotes MyD88
R3 T18 T26 causeOf TRAF6,inhibits
R4 T19 T28 themeOf NFAT5,expression
R8 T27 T26 themeOf induced,inhibits
R9 T28 T27 themeOf expression,induced
R2 T17 T26 causeOf IRAK1,inhibits

test3

Id Subject Object Predicate Lexical cue
T40 178-183 Protein denotes NFAT5
T39 97-102 Protein denotes NFAT5
T38 55-60 Protein denotes TRAF6
T37 44-49 Protein denotes IRAK1
T36 37-42 Protein denotes MyD88
T52 178-183 Protein denotes NFAT5
T51 97-102 Protein denotes NFAT5
T50 55-60 Protein denotes TRAF6
T49 44-49 Protein denotes IRAK1
T48 37-42 Protein denotes MyD88