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PMC:3317373 / 20458-20739 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T8267 277-280 NN denotes TBI
T8266 271-276 IN denotes after
T8265 263-270 NN denotes therapy
T8264 245-262 JJ denotes anti-inflammatory
T8263 241-244 IN denotes for
T8262 234-240 NN denotes target
T8261 224-233 JJ denotes important
T8260 221-223 DT denotes an
T8259 218-220 VB denotes be
T8258 214-217 MD denotes may
T8257 209-213 NN denotes Nrf2
T8256 204-208 IN denotes that
T8255 196-203 VB denotes suggest
T8254 188-195 NN denotes results
T8253 182-187 DT denotes These
T8252 174-180 NN denotes injury
T8251 166-173 NN denotes scratch
T8250 160-165 IN denotes after
T8249 149-159 NN denotes astrocytes
T8248 146-148 IN denotes in
T8247 139-145 NN denotes deaths
T8246 134-138 NN denotes cell
T8245 129-133 JJ denotes more
T8244 126-128 IN denotes in
T8243 116-125 VB denotes resulting
T8242 111-115 NN denotes MMP9
T8241 107-110 CC denotes and
T8240 105-106 -COMMA- denotes ,
T8239 101-105 NN denotes IL-6
T8238 99-100 -COMMA- denotes ,
T8237 94-99 NN denotes IL-1β
T8236 92-93 -COMMA- denotes ,
T8235 87-92 NN denotes TNF-α
T8234 84-86 IN denotes of
T8233 73-83 NN denotes expression
T8232 69-72 DT denotes the
T8231 65-68 CC denotes and
T8230 59-64 NN denotes NF-κB
T8229 56-58 IN denotes of
T8228 45-55 NN denotes activation
T8227 41-44 DT denotes the
T8226 33-40 VB denotes induced
T8225 28-32 NN denotes Nrf2
T8224 25-27 IN denotes of
T8223 15-24 NN denotes depletion
T8222 13-14 -COMMA- denotes ,
T8221 3-13 NN denotes conclusion
T8220 0-2 IN denotes In
R6770 T8221 T8220 arg2Of conclusion,In
R6771 T8223 T8224 arg1Of depletion,of
R6772 T8223 T8226 arg1Of depletion,induced
R6773 T8225 T8224 arg2Of Nrf2,of
R6774 T8226 T8220 arg1Of induced,In
R6775 T8226 T8222 arg1Of induced,","
R6776 T8226 T8243 modOf induced,resulting
R6777 T8228 T8227 arg1Of activation,the
R6778 T8228 T8229 arg1Of activation,of
R6779 T8228 T8231 arg1Of activation,and
R6780 T8230 T8229 arg2Of NF-κB,of
R6781 T8231 T8226 arg2Of and,induced
R6782 T8233 T8231 arg2Of expression,and
R6783 T8233 T8232 arg1Of expression,the
R6784 T8233 T8234 arg1Of expression,of
R6785 T8235 T8236 arg1Of TNF-α,","
R6786 T8236 T8238 arg1Of ",",","
R6787 T8237 T8236 arg2Of IL-1β,","
R6788 T8238 T8241 arg1Of ",",and
R6789 T8239 T8238 arg2Of IL-6,","
R6790 T8241 T8234 arg2Of and,of
R6791 T8241 T8240 arg1Of and,","
R6792 T8242 T8241 arg2Of MMP9,and
R6793 T8243 T8244 arg1Of resulting,in
R6794 T8247 T8244 arg2Of deaths,in
R6795 T8247 T8245 arg1Of deaths,more
R6796 T8247 T8246 arg1Of deaths,cell
R6797 T8247 T8248 arg1Of deaths,in
R6798 T8249 T8248 arg2Of astrocytes,in
R6799 T8249 T8250 arg1Of astrocytes,after
R6800 T8252 T8250 arg2Of injury,after
R6801 T8252 T8251 arg1Of injury,scratch
R6802 T8254 T8253 arg1Of results,These
R6803 T8254 T8255 arg1Of results,suggest
R6804 T8257 T8258 arg1Of Nrf2,may
R6805 T8257 T8259 arg1Of Nrf2,be
R6806 T8259 T8255 arg2Of be,suggest
R6807 T8259 T8256 arg1Of be,that
R6808 T8259 T8258 arg2Of be,may
R6809 T8262 T8259 arg2Of target,be
R6810 T8262 T8260 arg1Of target,an
R6811 T8262 T8261 arg1Of target,important
R6812 T8262 T8263 arg1Of target,for
R6813 T8262 T8266 arg1Of target,after
R6814 T8265 T8263 arg2Of therapy,for
R6815 T8265 T8264 arg1Of therapy,anti-inflammatory
R6816 T8267 T8266 arg2Of TBI,after

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T7341 111-115 Protein denotes MMP9
T7340 101-105 Protein denotes IL-6
T7339 94-99 Protein denotes IL-1β

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T8386 101-105 http://www.uniprot.org/uniprot/P05231 denotes IL-6
T8371 87-92 http://www.uniprot.org/uniprot/P01375 denotes TNF-α
T8379 94-99 http://www.uniprot.org/uniprot/P01584 denotes IL-1β

GO-BP

Id Subject Object Predicate Lexical cue
T7367 134-145 http://purl.obolibrary.org/obo/GO_0008219 denotes cell deaths
T7355 139-145 http://purl.obolibrary.org/obo/GO_0016265 denotes deaths
T7345 45-64 http://purl.obolibrary.org/obo/GO_0051092 denotes activation of NF-κB

GO-MF

Id Subject Object Predicate Lexical cue
T8289 101-105 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6

GO-CC

Id Subject Object Predicate Lexical cue
T8298 134-138 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T7247 182-281 Sentence denotes These results suggest that Nrf2 may be an important target for anti-inflammatory therapy after TBI.
T7246 0-181 Sentence denotes In conclusion, depletion of Nrf2 induced the activation of NF-κB and the expression of TNF-α, IL-1β, IL-6, and MMP9 resulting in more cell deaths in astrocytes after scratch injury.
T192 0-181 Sentence denotes In conclusion, depletion of Nrf2 induced the activation of NF-κB and the expression of TNF-α, IL-1β, IL-6, and MMP9 resulting in more cell deaths in astrocytes after scratch injury.
T193 182-281 Sentence denotes These results suggest that Nrf2 may be an important target for anti-inflammatory therapy after TBI.

ICD10

Id Subject Object Predicate Lexical cue
T8277 174-180 http://purl.bioontology.org/ontology/ICD10/T14.9 denotes injury

simple1

Id Subject Object Predicate Lexical cue
T8356 111-115 Protein denotes MMP9
T8355 101-105 Protein denotes IL-6
T8354 94-99 Protein denotes IL-1β

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T9937 73-83 Gene_expression denotes expression
T9936 33-40 Positive_regulation denotes induced
T9915 111-115 Protein denotes MMP9
T9914 101-105 Protein denotes IL-6
T9913 94-99 Protein denotes IL-1β
R8164 T9913 T9937 themeOf IL-1β,expression
R8165 T9914 T9937 themeOf IL-6,expression
R8166 T9915 T9937 themeOf MMP9,expression
R8202 T9937 T9936 themeOf expression,induced
R8205 T9937 T9936 themeOf expression,induced
R8206 T9937 T9936 themeOf expression,induced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T8494 33-40 Positive_regulation denotes induced
T8493 73-83 Gene_expression denotes expression
T8492 15-24 Negative_regulation denotes depletion
T8471 111-115 Protein denotes MMP9
T8470 101-105 Protein denotes IL-6
T8469 94-99 Protein denotes IL-1β
R6892 T8469 T8493 themeOf IL-1β,expression
R6893 T8470 T8493 themeOf IL-6,expression
R6894 T8471 T8493 themeOf MMP9,expression
R6909 T8493 T8494 themeOf expression,induced
R6910 T8493 T8494 themeOf expression,induced
R6911 T8493 T8494 themeOf expression,induced
R6912 T8494 T8492 themeOf induced,depletion
R6913 T8494 T8492 themeOf induced,depletion
R6914 T8494 T8492 themeOf induced,depletion

DLUT931

Id Subject Object Predicate Lexical cue
T8443 45-55 Positive_regulation denotes activation
T8442 73-83 Gene_expression denotes expression
T8420 111-115 Protein denotes MMP9
T8419 101-105 Protein denotes IL-6
T8418 94-99 Protein denotes IL-1β
R6839 T8418 T8442 themeOf IL-1β,expression
R6865 T8442 T8443 themeOf expression,activation
R6840 T8419 T8442 themeOf IL-6,expression
R6841 T8420 T8442 themeOf MMP9,expression
R6866 T8442 T8443 themeOf expression,activation
R6867 T8442 T8443 themeOf expression,activation

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T10090 69-173 Gene_expression denotes the expression of TNF-α, IL-1β, IL-6, and MMP9 resulting in more cell deaths in astrocytes after scratch
T10089 69-173 Gene_expression denotes the expression of TNF-α, IL-1β, IL-6, and MMP9 resulting in more cell deaths in astrocytes after scratch
T10088 69-173 Gene_expression denotes the expression of TNF-α, IL-1β, IL-6, and MMP9 resulting in more cell deaths in astrocytes after scratch
T10087 69-173 Gene_expression denotes the expression of TNF-α, IL-1β, IL-6, and MMP9 resulting in more cell deaths in astrocytes after scratch
T10025 209-213 Protein denotes Nrf2
T10022 111-115 Protein denotes MMP9
T10017 94-99 Protein denotes IL-1β
T9989 87-92 Protein denotes TNF-α
T9961 149-159 Entity denotes astrocytes
T9950 101-105 Protein denotes IL-6
T10053 41-64 Protein denotes the activation of NF-κB
T10046 245-280 Entity denotes anti-inflammatory therapy after TBI
R8182 T9950 T10087 themeOf IL-6,"the expression of TNF-α, IL-1β, IL-6, and MMP9 resulting in more cell deaths in astrocytes after scratch"
R8210 T10017 T10090 themeOf IL-1β,"the expression of TNF-α, IL-1β, IL-6, and MMP9 resulting in more cell deaths in astrocytes after scratch"
R8211 T9989 T10088 themeOf TNF-α,"the expression of TNF-α, IL-1β, IL-6, and MMP9 resulting in more cell deaths in astrocytes after scratch"
R8213 T10022 T10089 themeOf MMP9,"the expression of TNF-α, IL-1β, IL-6, and MMP9 resulting in more cell deaths in astrocytes after scratch"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T9677 280-281 . denotes .
T9676 277-280 NNP denotes TBI
T9675 271-276 IN denotes after
T9674 263-270 NN denotes therapy
T9673 245-262 JJ denotes anti-inflammatory
T9672 241-244 IN denotes for
T9671 234-240 NN denotes target
T9670 224-233 JJ denotes important
T9669 221-223 DT denotes an
T9668 218-220 VB denotes be
T9667 214-217 MD denotes may
T9666 209-213 NNP denotes Nrf2
T9665 204-208 IN denotes that
T9664 196-203 VBP denotes suggest
T9663 188-195 NNS denotes results
T9662 182-187 DT denotes These
T9661 180-181 . denotes .
T9660 174-180 NN denotes injury
T9659 166-173 NN denotes scratch
T9658 160-165 IN denotes after
T9657 149-159 NNS denotes astrocytes
T9656 146-148 IN denotes in
T9655 139-145 NNS denotes deaths
T9654 134-138 NN denotes cell
T9653 129-133 JJR denotes more
T9652 126-128 IN denotes in
T9651 116-125 VBG denotes resulting
T9650 111-115 NNP denotes MMP9
T9649 107-110 CC denotes and
T9648 105-106 , denotes ,
T9647 101-105 NNP denotes IL-6
T9646 99-100 , denotes ,
T9645 94-99 NNP denotes IL-1β
T9644 92-93 , denotes ,
T9643 87-92 NNP denotes TNF-α
T9642 84-86 IN denotes of
T9641 73-83 NN denotes expression
T9640 69-72 DT denotes the
T9639 65-68 CC denotes and
T9638 59-64 NNP denotes NF-κB
T9637 56-58 IN denotes of
T9636 45-55 NN denotes activation
T9635 41-44 DT denotes the
T9634 33-40 VBD denotes induced
T9629 3-13 NN denotes conclusion
T9628 0-2 IN denotes In
T9633 28-32 JJ denotes Nrf2
T9632 25-27 IN denotes of
T9631 15-24 NN denotes depletion
T9630 13-14 , denotes ,
R7890 T9643 T9642 pobj TNF-α,of
R7892 T9644 T9643 punct ",",TNF-α
R7893 T9645 T9643 conj IL-1β,TNF-α
R7895 T9646 T9645 punct ",",IL-1β
R7896 T9647 T9645 conj IL-6,IL-1β
R7897 T9648 T9647 punct ",",IL-6
R7901 T9649 T9647 cc and,IL-6
R7903 T9650 T9647 conj MMP9,IL-6
R7904 T9651 T9634 advcl resulting,induced
R7906 T9652 T9651 prep in,resulting
R7907 T9653 T9655 amod more,deaths
R7909 T9654 T9655 compound cell,deaths
R7910 T9655 T9652 pobj deaths,in
R7911 T9656 T9655 prep in,deaths
R7913 T9657 T9656 pobj astrocytes,in
R7914 T9658 T9651 prep after,resulting
R7916 T9659 T9660 compound scratch,injury
R7917 T9660 T9658 pobj injury,after
R7918 T9661 T9634 punct .,induced
R7920 T9662 T9663 det These,results
R7921 T9663 T9664 nsubj results,suggest
R7923 T9664 T9664 ROOT suggest,suggest
R7924 T9665 T9668 mark that,be
R7926 T9666 T9668 nsubj Nrf2,be
R7927 T9667 T9668 aux may,be
R7928 T9668 T9664 ccomp be,suggest
R7929 T9669 T9671 det an,target
R7930 T9670 T9671 amod important,target
R7931 T9671 T9668 attr target,be
R7933 T9672 T9671 prep for,target
R7934 T9673 T9674 amod anti-inflammatory,therapy
R7935 T9674 T9672 pobj therapy,for
R7937 T9675 T9668 prep after,be
R7938 T9676 T9675 pobj TBI,after
R7940 T9677 T9664 punct .,suggest
R8054 T9628 T9634 prep In,induced
R8055 T9629 T9628 pobj conclusion,In
R8057 T9630 T9634 punct ",",induced
R8058 T9631 T9634 nsubj depletion,induced
R8062 T9632 T9631 prep of,depletion
R8063 T9633 T9632 pobj Nrf2,of
R8064 T9634 T9634 ROOT induced,induced
R8065 T9635 T9636 det the,activation
R8067 T9636 T9634 dobj activation,induced
R8069 T9637 T9636 prep of,activation
R8072 T9638 T9637 pobj NF-κB,of
R8073 T9639 T9636 cc and,activation
R8074 T9640 T9641 det the,expression
R8075 T9641 T9636 conj expression,activation
R8082 T9642 T9641 prep of,expression

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T8742 209-213 Protein denotes Nrf2
T8741 45-55 Positive_regulation denotes activation
T8740 45-55 Positive_regulation denotes activation
T8739 45-55 Positive_regulation denotes activation
T8738 45-55 Positive_regulation denotes activation
T8737 33-40 Positive_regulation denotes induced
T8736 33-40 Positive_regulation denotes induced
T8735 33-40 Positive_regulation denotes induced
T8734 33-40 Positive_regulation denotes induced
T8733 33-40 Positive_regulation denotes induced
T8732 116-125 Gene_expression denotes resulting
T8731 116-125 Gene_expression denotes resulting
T8730 116-125 Gene_expression denotes resulting
T8729 116-125 Gene_expression denotes resulting
T8728 73-83 Gene_expression denotes expression
T8727 73-83 Gene_expression denotes expression
T8726 73-83 Gene_expression denotes expression
T8725 73-83 Gene_expression denotes expression
T8719 87-92 Protein denotes TNF-α
T8718 59-64 Protein denotes NF-κB
T8717 28-32 Protein denotes Nrf2
T8724 45-55 Positive_regulation denotes activation
T8723 15-24 Negative_regulation denotes depletion
T8722 111-115 Protein denotes MMP9
T8721 101-105 Protein denotes IL-6
T8720 94-99 Protein denotes IL-1β
R7047 T8717 T8723 themeOf Nrf2,depletion
R7048 T8718 T8724 themeOf NF-κB,activation
R7049 T8719 T8725 themeOf TNF-α,expression
R7050 T8719 T8729 themeOf TNF-α,resulting
R7051 T8720 T8726 themeOf IL-1β,expression
R7052 T8720 T8730 themeOf IL-1β,resulting
R7053 T8721 T8727 themeOf IL-6,expression
R7054 T8721 T8731 themeOf IL-6,resulting
R7055 T8722 T8728 themeOf MMP9,expression
R7056 T8722 T8732 themeOf MMP9,resulting
R7057 T8724 T8733 themeOf activation,induced
R7058 T8725 T8734 themeOf expression,induced
R7060 T8726 T8735 themeOf expression,induced
R7066 T8733 T8723 Cause induced,depletion
R7067 T8734 T8723 Cause induced,depletion
R7068 T8735 T8723 Cause induced,depletion
R7059 T8725 T8738 themeOf expression,activation
R7061 T8726 T8739 themeOf expression,activation
R7062 T8727 T8736 themeOf expression,induced
R7063 T8727 T8740 themeOf expression,activation
R7064 T8728 T8737 themeOf expression,induced
R7065 T8728 T8741 themeOf expression,activation
R7069 T8736 T8723 Cause induced,depletion
R7070 T8737 T8723 Cause induced,depletion

testone

Id Subject Object Predicate Lexical cue
T7107 73-83 Gene_expression denotes expression
T7106 45-55 Positive_regulation denotes activation
T7105 33-40 Positive_regulation denotes induced
T7104 15-24 Negative_regulation denotes depletion
T7079 111-115 Protein denotes MMP9
T7078 101-105 Protein denotes IL-6
T7077 94-99 Protein denotes IL-1β
R5824 T7077 T7107 themeOf IL-1β,expression
R5825 T7078 T7107 themeOf IL-6,expression
R5826 T7079 T7107 themeOf MMP9,expression
R5833 T7106 T7105 themeOf activation,induced

test3

Id Subject Object Predicate Lexical cue
T7193 111-115 Protein denotes MMP9
T7192 101-105 Protein denotes IL-6
T7191 94-99 Protein denotes IL-1β
T7190 73-83 Gene_expression denotes expression
T7189 45-55 Positive_regulation denotes activation
T7188 33-40 Positive_regulation denotes induced
T7187 15-24 Negative_regulation denotes depletion
T7135 111-115 Protein denotes MMP9
T7134 101-105 Protein denotes IL-6
T7133 94-99 Protein denotes IL-1β
R5864 T7189 T7188 themeOf activation,induced
R5865 T7191 T7190 themeOf IL-1β,expression
R5866 T7192 T7190 themeOf IL-6,expression
R5867 T7193 T7190 themeOf MMP9,expression