PMC:3317373 / 16440-16667 JSONTXT

Annnotations TAB JSON ListView MergeView

    2_test

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    pmc-enju-pas

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    bionlp-st-ge-2016-test-proteins

    {"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T7325","span":{"begin":176,"end":181},"obj":"Protein"},{"id":"T7324","span":{"begin":120,"end":124},"obj":"Protein"},{"id":"T7323","span":{"begin":89,"end":93},"obj":"Protein"},{"id":"T7322","span":{"begin":56,"end":60},"obj":"Protein"},{"id":"T7321","span":{"begin":23,"end":28},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"For example, TNF-α and IL-1β are potent stimulators for MMP9 in astrocytes [12, 13], and IL-6 induces overexpression of MMP9 in human colon carcinoma cells [14], and TNF-α and IL-1β also can induce activation of NF-κB [15, 16]."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T8387","span":{"begin":80,"end":91},"obj":"http://www.uniprot.org/uniprot/P35225"},{"id":"T8382","span":{"begin":89,"end":93},"obj":"http://www.uniprot.org/uniprot/P05231"},{"id":"T8375","span":{"begin":176,"end":181},"obj":"http://www.uniprot.org/uniprot/P01584"},{"id":"T8374","span":{"begin":23,"end":28},"obj":"http://www.uniprot.org/uniprot/P01584"},{"id":"T8367","span":{"begin":166,"end":171},"obj":"http://www.uniprot.org/uniprot/P01375"},{"id":"T8366","span":{"begin":13,"end":18},"obj":"http://www.uniprot.org/uniprot/P01375"},{"id":"T8360","span":{"begin":166,"end":169},"obj":"http://www.uniprot.org/uniprot/P01375"},{"id":"T8359","span":{"begin":13,"end":16},"obj":"http://www.uniprot.org/uniprot/P01375"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"For example, TNF-α and IL-1β are potent stimulators for MMP9 in astrocytes [12, 13], and IL-6 induces overexpression of MMP9 in human colon carcinoma cells [14], and TNF-α and IL-1β also can induce activation of NF-κB [15, 16]."}

    UBERON-AE

    {"project":"UBERON-AE","denotations":[{"id":"T7206","span":{"begin":134,"end":139},"obj":"http://purl.obolibrary.org/obo/UBERON_0001155"}],"text":"For example, TNF-α and IL-1β are potent stimulators for MMP9 in astrocytes [12, 13], and IL-6 induces overexpression of MMP9 in human colon carcinoma cells [14], and TNF-α and IL-1β also can induce activation of NF-κB [15, 16]."}

    GO-BP

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    GO-MF

    {"project":"GO-MF","denotations":[{"id":"T8284","span":{"begin":89,"end":93},"obj":"http://purl.obolibrary.org/obo/GO_0005138"},{"id":"T8290","span":{"begin":80,"end":91},"obj":"http://purl.obolibrary.org/obo/GO_0005144"}],"text":"For example, TNF-α and IL-1β are potent stimulators for MMP9 in astrocytes [12, 13], and IL-6 induces overexpression of MMP9 in human colon carcinoma cells [14], and TNF-α and IL-1β also can induce activation of NF-κB [15, 16]."}

    GO-CC

    {"project":"GO-CC","denotations":[{"id":"T8296","span":{"begin":150,"end":155},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"For example, TNF-α and IL-1β are potent stimulators for MMP9 in astrocytes [12, 13], and IL-6 induces overexpression of MMP9 in human colon carcinoma cells [14], and TNF-α and IL-1β also can induce activation of NF-κB [15, 16]."}

    sentences

    {"project":"sentences","denotations":[{"id":"T7220","span":{"begin":0,"end":227},"obj":"Sentence"},{"id":"T166","span":{"begin":0,"end":227},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"For example, TNF-α and IL-1β are potent stimulators for MMP9 in astrocytes [12, 13], and IL-6 induces overexpression of MMP9 in human colon carcinoma cells [14], and TNF-α and IL-1β also can induce activation of NF-κB [15, 16]."}

    simple1

    {"project":"simple1","denotations":[{"id":"T8340","span":{"begin":176,"end":181},"obj":"Protein"},{"id":"T8339","span":{"begin":120,"end":124},"obj":"Protein"},{"id":"T8338","span":{"begin":89,"end":93},"obj":"Protein"},{"id":"T8337","span":{"begin":56,"end":60},"obj":"Protein"},{"id":"T8336","span":{"begin":23,"end":28},"obj":"Protein"}],"text":"For example, TNF-α and IL-1β are potent stimulators for MMP9 in astrocytes [12, 13], and IL-6 induces overexpression of MMP9 in human colon carcinoma cells [14], and TNF-α and IL-1β also can induce activation of NF-κB [15, 16]."}

    BioNLP16_DUT

    {"project":"BioNLP16_DUT","denotations":[{"id":"T9924","span":{"begin":102,"end":116},"obj":"Positive_regulation"},{"id":"T9923","span":{"begin":94,"end":101},"obj":"Positive_regulation"},{"id":"T9899","span":{"begin":56,"end":60},"obj":"Protein"},{"id":"T9898","span":{"begin":23,"end":28},"obj":"Protein"},{"id":"T9897","span":{"begin":176,"end":181},"obj":"Protein"},{"id":"T9896","span":{"begin":120,"end":124},"obj":"Protein"},{"id":"T9895","span":{"begin":89,"end":93},"obj":"Protein"}],"relations":[{"id":"R8158","pred":"themeOf","subj":"T9896","obj":"T9924"},{"id":"R8181","pred":"themeOf","subj":"T9924","obj":"T9923"}],"text":"For example, TNF-α and IL-1β are potent stimulators for MMP9 in astrocytes [12, 13], and IL-6 induces overexpression of MMP9 in human colon carcinoma cells [14], and TNF-α and IL-1β also can induce activation of NF-κB [15, 16]."}

    BioNLP16_Messiy

    {"project":"BioNLP16_Messiy","denotations":[{"id":"T8479","span":{"begin":94,"end":101},"obj":"Positive_regulation"},{"id":"T8478","span":{"begin":102,"end":116},"obj":"Positive_regulation"},{"id":"T8454","span":{"begin":23,"end":28},"obj":"Protein"},{"id":"T8453","span":{"begin":176,"end":181},"obj":"Protein"},{"id":"T8452","span":{"begin":120,"end":124},"obj":"Protein"},{"id":"T8451","span":{"begin":89,"end":93},"obj":"Protein"},{"id":"T8455","span":{"begin":56,"end":60},"obj":"Protein"}],"relations":[{"id":"R6875","pred":"themeOf","subj":"T8452","obj":"T8478"},{"id":"R6899","pred":"themeOf","subj":"T8478","obj":"T8479"}],"text":"For example, TNF-α and IL-1β are potent stimulators for MMP9 in astrocytes [12, 13], and IL-6 induces overexpression of MMP9 in human colon carcinoma cells [14], and TNF-α and IL-1β also can induce activation of NF-κB [15, 16]."}

    DLUT931

    {"project":"DLUT931","denotations":[{"id":"T8429","span":{"begin":94,"end":101},"obj":"Positive_regulation"},{"id":"T8428","span":{"begin":102,"end":116},"obj":"Positive_regulation"},{"id":"T8404","span":{"begin":56,"end":60},"obj":"Protein"},{"id":"T8403","span":{"begin":23,"end":28},"obj":"Protein"},{"id":"T8402","span":{"begin":176,"end":181},"obj":"Protein"},{"id":"T8401","span":{"begin":120,"end":124},"obj":"Protein"},{"id":"T8400","span":{"begin":89,"end":93},"obj":"Protein"}],"relations":[{"id":"R6854","pred":"themeOf","subj":"T8428","obj":"T8429"},{"id":"R6824","pred":"causeOf","subj":"T8400","obj":"T8429"},{"id":"R6825","pred":"themeOf","subj":"T8401","obj":"T8428"}],"text":"For example, TNF-α and IL-1β are potent stimulators for MMP9 in astrocytes [12, 13], and IL-6 induces overexpression of MMP9 in human colon carcinoma cells [14], and TNF-α and IL-1β also can induce activation of NF-κB [15, 16]."}

    bionlp-st-ge-2016-test-ihmc

    {"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T10098","span":{"begin":102,"end":124},"obj":"Positive_regulation"},{"id":"T10097","span":{"begin":102,"end":124},"obj":"Gene_expression"},{"id":"T10015","span":{"begin":209,"end":217},"obj":"Protein"},{"id":"T9983","span":{"begin":166,"end":171},"obj":"Protein"},{"id":"T9981","span":{"begin":176,"end":181},"obj":"Protein"},{"id":"T9979","span":{"begin":23,"end":28},"obj":"Protein"},{"id":"T9962","span":{"begin":89,"end":93},"obj":"Protein"},{"id":"T9957","span":{"begin":117,"end":124},"obj":"Protein"},{"id":"T9953","span":{"begin":64,"end":79},"obj":"Entity"},{"id":"T9941","span":{"begin":56,"end":60},"obj":"Protein"},{"id":"T10055","span":{"begin":198,"end":226},"obj":"Positive_regulation"},{"id":"T10042","span":{"begin":13,"end":18},"obj":"Protein"}],"relations":[{"id":"R8187","pred":"themeOf","subj":"T9957","obj":"T10097"},{"id":"R8188","pred":"themeOf","subj":"T9957","obj":"T10098"},{"id":"R8208","pred":"themeOf","subj":"T10015","obj":"T10055"}],"text":"For example, TNF-α and IL-1β are potent stimulators for MMP9 in astrocytes [12, 13], and IL-6 induces overexpression of MMP9 in human colon carcinoma cells [14], and TNF-α and IL-1β also can induce activation of NF-κB [15, 16]."}

    bionlp-st-ge-2016-spacy-parsed

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