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PMC:3317373 / 16440-16667 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22529521-8945720-67992095 76-78 8945720 denotes 12
22529521-8719627-67992096 80-82 8719627 denotes 13
22529521-21114487-67992097 157-159 21114487 denotes 14
22529521-15269258-67992098 219-221 15269258 denotes 15
22529521-10340762-67992099 223-225 10340762 denotes 16

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T7583 225-226 -RRB- denotes ]
T7582 223-225 CD denotes 16
T7581 221-222 -COMMA- denotes ,
T7580 219-221 CD denotes 15
T7579 218-219 -LRB- denotes [
T7578 212-217 NN denotes NF-κB
T7577 209-211 IN denotes of
T7576 198-208 NN denotes activation
T7575 191-197 VB denotes induce
T7574 187-190 MD denotes can
T7573 182-186 RB denotes also
T7572 176-181 NN denotes IL-1β
T7571 172-175 CC denotes and
T7570 166-171 NN denotes TNF-α
T7569 162-165 CC denotes and
T7568 160-161 -COMMA- denotes ,
T7567 159-160 -RRB- denotes ]
T7566 157-159 CD denotes 14
T7565 156-157 -LRB- denotes [
T7564 150-155 NN denotes cells
T7563 140-149 NN denotes carcinoma
T7562 134-139 NN denotes colon
T7561 128-133 JJ denotes human
T7560 125-127 IN denotes in
T7559 120-124 NN denotes MMP9
T7558 117-119 IN denotes of
T7557 102-116 NN denotes overexpression
T7556 94-101 VB denotes induces
T7555 89-93 NN denotes IL-6
T7554 85-88 CC denotes and
T7553 83-84 -COMMA- denotes ,
T7552 82-83 -RRB- denotes ]
T7551 80-82 CD denotes 13
T7550 78-79 -COMMA- denotes ,
T7549 76-78 CD denotes 12
T7548 75-76 -LRB- denotes [
T7547 64-74 NN denotes astrocytes
T7546 61-63 IN denotes in
T7545 56-60 NN denotes MMP9
T7544 52-55 IN denotes for
T7543 40-51 NN denotes stimulators
T7542 33-39 JJ denotes potent
T7541 29-32 VB denotes are
T7540 23-28 NN denotes IL-1β
T7539 19-22 CC denotes and
T7538 13-18 NN denotes TNF-α
T7537 11-12 -COMMA- denotes ,
T7536 4-11 NN denotes example
T7535 0-3 IN denotes For
R6077 T7536 T7535 arg2Of example,For
R6078 T7538 T7539 arg1Of TNF-α,and
R6079 T7539 T7541 arg1Of and,are
R6080 T7540 T7539 arg2Of IL-1β,and
R6081 T7541 T7554 arg1Of are,and
R6082 T7543 T7541 arg2Of stimulators,are
R6083 T7543 T7542 arg1Of stimulators,potent
R6084 T7543 T7544 arg1Of stimulators,for
R6085 T7543 T7546 arg1Of stimulators,in
R6086 T7545 T7544 arg2Of MMP9,for
R6087 T7547 T7546 arg2Of astrocytes,in
R6088 T7547 T7548 arg1Of astrocytes,[
R6089 T7549 T7550 arg1Of 12,","
R6090 T7550 T7548 arg2Of ",",[
R6091 T7551 T7550 arg2Of 13,","
R6092 T7552 T7548 arg3Of ],[
R6093 T7554 T7535 arg1Of and,For
R6094 T7554 T7537 arg1Of and,","
R6095 T7554 T7553 arg1Of and,","
R6096 T7555 T7556 arg1Of IL-6,induces
R6097 T7556 T7560 arg1Of induces,in
R6098 T7556 T7569 arg1Of induces,and
R6099 T7557 T7556 arg2Of overexpression,induces
R6100 T7557 T7558 arg1Of overexpression,of
R6101 T7559 T7558 arg2Of MMP9,of
R6102 T7564 T7560 arg2Of cells,in
R6103 T7564 T7561 arg1Of cells,human
R6104 T7564 T7562 arg1Of cells,colon
R6105 T7564 T7563 arg1Of cells,carcinoma
R6106 T7564 T7565 arg1Of cells,[
R6107 T7566 T7565 arg2Of 14,[
R6108 T7567 T7565 arg3Of ],[
R6109 T7569 T7554 arg2Of and,and
R6110 T7569 T7568 arg1Of and,","
R6111 T7570 T7571 arg1Of TNF-α,and
R6112 T7571 T7574 arg1Of and,can
R6113 T7571 T7575 arg1Of and,induce
R6114 T7572 T7571 arg2Of IL-1β,and
R6115 T7575 T7569 arg2Of induce,and
R6116 T7575 T7573 arg1Of induce,also
R6117 T7575 T7574 arg2Of induce,can
R6118 T7575 T7579 arg1Of induce,[
R6119 T7576 T7575 arg2Of activation,induce
R6120 T7576 T7577 arg1Of activation,of
R6121 T7578 T7577 arg2Of NF-κB,of
R6122 T7580 T7579 arg2Of 15,[
R6123 T7580 T7581 arg1Of 15,","
R6124 T7582 T7581 arg2Of 16,","
R6125 T7583 T7579 arg3Of ],[

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T7325 176-181 Protein denotes IL-1β
T7324 120-124 Protein denotes MMP9
T7323 89-93 Protein denotes IL-6
T7322 56-60 Protein denotes MMP9
T7321 23-28 Protein denotes IL-1β

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T8387 80-91 http://www.uniprot.org/uniprot/P35225 denotes 13], and IL
T8382 89-93 http://www.uniprot.org/uniprot/P05231 denotes IL-6
T8375 176-181 http://www.uniprot.org/uniprot/P01584 denotes IL-1β
T8374 23-28 http://www.uniprot.org/uniprot/P01584 denotes IL-1β
T8367 166-171 http://www.uniprot.org/uniprot/P01375 denotes TNF-α
T8366 13-18 http://www.uniprot.org/uniprot/P01375 denotes TNF-α
T8360 166-169 http://www.uniprot.org/uniprot/P01375 denotes TNF
T8359 13-16 http://www.uniprot.org/uniprot/P01375 denotes TNF

UBERON-AE

Id Subject Object Predicate Lexical cue
T7206 134-139 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colon

GO-BP

Id Subject Object Predicate Lexical cue
T7343 198-217 http://purl.obolibrary.org/obo/GO_0051092 denotes activation of NF-κB

GO-MF

Id Subject Object Predicate Lexical cue
T8284 89-93 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6
T8290 80-91 http://purl.obolibrary.org/obo/GO_0005144 denotes 13], and IL

GO-CC

Id Subject Object Predicate Lexical cue
T8296 150-155 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T7220 0-227 Sentence denotes For example, TNF-α and IL-1β are potent stimulators for MMP9 in astrocytes [12, 13], and IL-6 induces overexpression of MMP9 in human colon carcinoma cells [14], and TNF-α and IL-1β also can induce activation of NF-κB [15, 16].
T166 0-227 Sentence denotes For example, TNF-α and IL-1β are potent stimulators for MMP9 in astrocytes [12, 13], and IL-6 induces overexpression of MMP9 in human colon carcinoma cells [14], and TNF-α and IL-1β also can induce activation of NF-κB [15, 16].

simple1

Id Subject Object Predicate Lexical cue
T8340 176-181 Protein denotes IL-1β
T8339 120-124 Protein denotes MMP9
T8338 89-93 Protein denotes IL-6
T8337 56-60 Protein denotes MMP9
T8336 23-28 Protein denotes IL-1β

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T9924 102-116 Positive_regulation denotes overexpression
T9923 94-101 Positive_regulation denotes induces
T9899 56-60 Protein denotes MMP9
T9898 23-28 Protein denotes IL-1β
T9897 176-181 Protein denotes IL-1β
T9896 120-124 Protein denotes MMP9
T9895 89-93 Protein denotes IL-6
R8158 T9896 T9924 themeOf MMP9,overexpression
R8181 T9924 T9923 themeOf overexpression,induces

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T8479 94-101 Positive_regulation denotes induces
T8478 102-116 Positive_regulation denotes overexpression
T8454 23-28 Protein denotes IL-1β
T8453 176-181 Protein denotes IL-1β
T8452 120-124 Protein denotes MMP9
T8451 89-93 Protein denotes IL-6
T8455 56-60 Protein denotes MMP9
R6875 T8452 T8478 themeOf MMP9,overexpression
R6899 T8478 T8479 themeOf overexpression,induces

DLUT931

Id Subject Object Predicate Lexical cue
T8429 94-101 Positive_regulation denotes induces
T8428 102-116 Positive_regulation denotes overexpression
T8404 56-60 Protein denotes MMP9
T8403 23-28 Protein denotes IL-1β
T8402 176-181 Protein denotes IL-1β
T8401 120-124 Protein denotes MMP9
T8400 89-93 Protein denotes IL-6
R6854 T8428 T8429 themeOf overexpression,induces
R6824 T8400 T8429 causeOf IL-6,induces
R6825 T8401 T8428 themeOf MMP9,overexpression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T10098 102-124 Positive_regulation denotes overexpression of MMP9
T10097 102-124 Gene_expression denotes overexpression of MMP9
T10015 209-217 Protein denotes of NF-κB
T9983 166-171 Protein denotes TNF-α
T9981 176-181 Protein denotes IL-1β
T9979 23-28 Protein denotes IL-1β
T9962 89-93 Protein denotes IL-6
T9957 117-124 Protein denotes of MMP9
T9953 64-79 Entity denotes astrocytes [12,
T9941 56-60 Protein denotes MMP9
T10055 198-226 Positive_regulation denotes activation of NF-κB [15, 16]
T10042 13-18 Protein denotes TNF-α
R8187 T9957 T10097 themeOf of MMP9,overexpression of MMP9
R8188 T9957 T10098 themeOf of MMP9,overexpression of MMP9
R8208 T10015 T10055 themeOf of NF-κB,"activation of NF-κB [15, 16]"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T8965 226-227 . denotes .
T8964 225-226 NN denotes ]
T8963 223-225 CD denotes 16
T8962 221-222 , denotes ,
T8961 219-221 CD denotes 15
T8960 218-219 NNP denotes [
T8959 212-217 NNP denotes NF-κB
T8958 209-211 IN denotes of
T8957 198-208 NN denotes activation
T8956 191-197 VB denotes induce
T8955 187-190 MD denotes can
T8954 182-186 RB denotes also
T8953 176-181 NNP denotes IL-1β
T8952 172-175 CC denotes and
T8951 166-171 NNP denotes TNF-α
T8950 162-165 CC denotes and
T8949 160-161 , denotes ,
T8948 159-160 NNP denotes ]
T8947 157-159 CD denotes 14
T8946 156-157 NNP denotes [
T8945 150-155 NNS denotes cells
T8944 140-149 NN denotes carcinoma
T8943 134-139 NN denotes colon
T8942 128-133 JJ denotes human
T8941 125-127 IN denotes in
T8940 120-124 NNP denotes MMP9
T8939 117-119 IN denotes of
T8938 102-116 NN denotes overexpression
T8937 94-101 VBZ denotes induces
T8936 89-93 NNP denotes IL-6
T8935 85-88 CC denotes and
T8934 83-84 , denotes ,
T8933 82-83 NNP denotes ]
T8932 80-82 CD denotes 13
T8931 78-79 , denotes ,
T8930 76-78 CD denotes 12
T8929 75-76 NNP denotes [
T8928 64-74 NNS denotes astrocytes
T8927 61-63 IN denotes in
T8926 56-60 NNP denotes MMP9
T8925 52-55 IN denotes for
T8924 40-51 NNS denotes stimulators
T8923 33-39 JJ denotes potent
T8922 29-32 VBP denotes are
T8921 23-28 NNP denotes IL-1β
T8920 19-22 CC denotes and
T8919 13-18 NNP denotes TNF-α
T8918 11-12 , denotes ,
T8917 4-11 NN denotes example
T8916 0-3 IN denotes For
R7248 T8920 T8919 cc and,TNF-α
R7249 T8921 T8919 conj IL-1β,TNF-α
R7250 T8922 T8922 ROOT are,are
R7251 T8923 T8924 amod potent,stimulators
R7252 T8924 T8922 attr stimulators,are
R7253 T8925 T8924 prep for,stimulators
R7254 T8926 T8925 pobj MMP9,for
R7255 T8927 T8924 prep in,stimulators
R7256 T8928 T8927 pobj astrocytes,in
R7257 T8929 T8933 nmod [,]
R7258 T8930 T8933 nummod 12,]
R7259 T8931 T8933 punct ",",]
R7260 T8932 T8933 nummod 13,]
R7261 T8933 T8937 nsubj ],induces
R7262 T8934 T8933 punct ",",]
R7263 T8935 T8933 cc and,]
R7264 T8936 T8933 conj IL-6,]
R7265 T8937 T8937 ROOT induces,induces
R7266 T8938 T8937 dobj overexpression,induces
R7267 T8939 T8938 prep of,overexpression
R7268 T8940 T8939 pobj MMP9,of
R7269 T8941 T8938 prep in,overexpression
R7270 T8942 T8944 amod human,carcinoma
R7271 T8943 T8944 compound colon,carcinoma
R7272 T8944 T8945 compound carcinoma,cells
R7273 T8945 T8941 pobj cells,in
R7274 T8946 T8948 nmod [,]
R7275 T8947 T8948 nummod 14,]
R7276 T8948 T8937 dobj ],induces
R7277 T8949 T8948 punct ",",]
R7278 T8950 T8948 cc and,]
R7279 T8951 T8948 conj TNF-α,]
R7280 T8952 T8951 cc and,TNF-α
R7281 T8953 T8951 conj IL-1β,TNF-α
R7282 T8954 T8956 advmod also,induce
R7283 T8955 T8956 aux can,induce
R7284 T8956 T8937 conj induce,induces
R7285 T8957 T8956 dobj activation,induce
R7286 T8958 T8957 prep of,activation
R7287 T8959 T8960 compound NF-κB,[
R7288 T8960 T8958 pobj [,of
R7289 T8961 T8960 nummod 15,[
R7290 T8962 T8960 punct ",",[
R7291 T8963 T8964 nummod 16,]
R7292 T8964 T8960 appos ],[
R7293 T8965 T8937 punct .,induces
R7244 T8916 T8922 prep For,are
R7245 T8917 T8916 pobj example,For
R7246 T8918 T8922 punct ",",are
R7247 T8919 T8922 nsubj TNF-α,are

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T8598 191-197 Positive_regulation denotes induce
T8597 191-197 Positive_regulation denotes induce
T8596 94-101 Positive_regulation denotes induces
T8595 198-208 Positive_regulation denotes activation
T8594 102-116 Positive_regulation denotes overexpression
T8593 40-51 Positive_regulation denotes stimulators
T8592 40-51 Positive_regulation denotes stimulators
T8591 212-217 Protein denotes NF-κB
T8590 176-181 Protein denotes IL-1β
T8589 166-171 Protein denotes TNF-α
T8588 120-124 Protein denotes MMP9
T8587 89-93 Protein denotes IL-6
T8586 56-60 Protein denotes MMP9
T8585 23-28 Protein denotes IL-1β
T8584 13-18 Protein denotes TNF-α
R6969 T8586 T8592 themeOf MMP9,stimulators
R6970 T8586 T8593 themeOf MMP9,stimulators
R6971 T8588 T8594 themeOf MMP9,overexpression
R6972 T8591 T8595 themeOf NF-κB,activation
R6973 T8592 T8584 Cause stimulators,TNF-α
R6974 T8593 T8585 Cause stimulators,IL-1β
R6975 T8594 T8596 themeOf overexpression,induces
R6976 T8595 T8597 themeOf activation,induce
R6977 T8595 T8598 themeOf activation,induce
R6978 T8596 T8587 Cause induces,IL-6
R6979 T8597 T8589 Cause induce,TNF-α
R6980 T8598 T8590 Cause induce,IL-1β

testone

Id Subject Object Predicate Lexical cue
T7063 176-181 Protein denotes IL-1β
T7062 120-124 Protein denotes MMP9
T7061 89-93 Protein denotes IL-6
T7060 56-60 Protein denotes MMP9
T7059 23-28 Protein denotes IL-1β

test3

Id Subject Object Predicate Lexical cue
T7119 176-181 Protein denotes IL-1β
T7118 120-124 Protein denotes MMP9
T7117 89-93 Protein denotes IL-6
T7116 56-60 Protein denotes MMP9
T7115 23-28 Protein denotes IL-1β
T7155 176-181 Protein denotes IL-1β
T7154 120-124 Protein denotes MMP9
T7153 102-116 Positive_regulation denotes overexpression
T7152 94-101 Positive_regulation denotes induces
T7151 89-93 Protein denotes IL-6
T7150 56-60 Protein denotes MMP9
T7149 23-28 Protein denotes IL-1β
R5845 T7151 T7152 causeOf IL-6,induces
R5846 T7153 T7152 themeOf overexpression,induces
R5847 T7154 T7153 themeOf MMP9,overexpression