> top > docs > PMC:3317373 > spans > 15826-16891 > annotations

PMC:3317373 / 15826-16891 JSONTXT

Annnotations TAB JSON ListView MergeView

2_test

Id Subject Object Predicate Lexical cue
22529521-16230799-67992090 98-99 16230799 denotes 2
22529521-9547234-67992091 101-102 9547234 denotes 9
22529521-15680377-67992092 312-313 15680377 denotes 3
22529521-19574840-67992093 315-317 19574840 denotes 10
22529521-19577550-67992094 319-321 19577550 denotes 11
22529521-8945720-67992095 690-692 8945720 denotes 12
22529521-8719627-67992096 694-696 8719627 denotes 13
22529521-21114487-67992097 771-773 21114487 denotes 14
22529521-15269258-67992098 833-835 15269258 denotes 15
22529521-10340762-67992099 837-839 10340762 denotes 16

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T7617 1061-1064 NN denotes TBI
T7616 1055-1060 IN denotes after
T7615 1050-1054 NN denotes loop
T7614 1035-1049 JJ denotes autoregulatory
T7613 1030-1034 JJ denotes such
T7612 1022-1029 VB denotes prevent
T7611 1019-1021 TO denotes to
T7610 1012-1018 NN denotes factor
T7609 1003-1011 JJ denotes upstream
T7608 1000-1002 DT denotes an
T7607 997-999 IN denotes on
T7606 987-996 VB denotes targeting
T7605 983-986 IN denotes for
T7604 976-982 NN denotes choice
T7603 971-975 JJ denotes good
T7602 969-970 DT denotes a
T7601 966-968 VB denotes is
T7600 963-965 PRP denotes It
T7599 956-961 NN denotes brain
T7598 953-955 TO denotes to
T7597 946-952 NN denotes injury
T7596 936-945 JJ denotes secondary
T7595 928-935 VB denotes induces
T7594 924-927 CC denotes and
T7593 911-923 NN denotes inflammation
T7592 908-910 IN denotes of
T7591 901-907 NN denotes effect
T7590 892-900 JJ denotes damaging
T7589 888-891 DT denotes the
T7588 877-887 VB denotes aggravates
T7587 867-876 RB denotes extremely
T7586 862-866 NN denotes loop
T7585 847-861 JJ denotes autoregulatory
T7584 842-846 DT denotes This
T7583 839-840 -RRB- denotes ]
T7582 837-839 CD denotes 16
T7581 835-836 -COMMA- denotes ,
T7580 833-835 CD denotes 15
T7579 832-833 -LRB- denotes [
T7578 826-831 NN denotes NF-κB
T7577 823-825 IN denotes of
T7576 812-822 NN denotes activation
T7575 805-811 VB denotes induce
T7574 801-804 MD denotes can
T7573 796-800 RB denotes also
T7572 790-795 NN denotes IL-1β
T7571 786-789 CC denotes and
T7570 780-785 NN denotes TNF-α
T7569 776-779 CC denotes and
T7568 774-775 -COMMA- denotes ,
T7567 773-774 -RRB- denotes ]
T7566 771-773 CD denotes 14
T7565 770-771 -LRB- denotes [
T7564 764-769 NN denotes cells
T7563 754-763 NN denotes carcinoma
T7562 748-753 NN denotes colon
T7561 742-747 JJ denotes human
T7560 739-741 IN denotes in
T7559 734-738 NN denotes MMP9
T7558 731-733 IN denotes of
T7557 716-730 NN denotes overexpression
T7556 708-715 VB denotes induces
T7555 703-707 NN denotes IL-6
T7554 699-702 CC denotes and
T7553 697-698 -COMMA- denotes ,
T7552 696-697 -RRB- denotes ]
T7551 694-696 CD denotes 13
T7550 692-693 -COMMA- denotes ,
T7549 690-692 CD denotes 12
T7548 689-690 -LRB- denotes [
T7547 678-688 NN denotes astrocytes
T7546 675-677 IN denotes in
T7545 670-674 NN denotes MMP9
T7544 666-669 IN denotes for
T7543 654-665 NN denotes stimulators
T7542 647-653 JJ denotes potent
T7541 643-646 VB denotes are
T7540 637-642 NN denotes IL-1β
T7539 633-636 CC denotes and
T7538 627-632 NN denotes TNF-α
T7537 625-626 -COMMA- denotes ,
T7536 618-625 NN denotes example
T7535 614-617 IN denotes For
T7534 603-612 NN denotes mediators
T7533 587-602 JJ denotes proinflammatory
T7532 581-586 DT denotes these
T7531 575-580 IN denotes among
T7530 570-574 NN denotes loop
T7529 555-569 JJ denotes autoregulatory
T7528 552-554 DT denotes an
T7527 549-551 VB denotes is
T7526 543-548 EX denotes there
T7525 538-542 IN denotes that
T7524 525-537 VB denotes demonstrated
T7523 520-524 VB denotes been
T7522 516-519 VB denotes has
T7521 513-515 PRP denotes It
T7520 501-511 NN denotes astrocytes
T7519 492-500 VB denotes cultured
T7518 489-491 IN denotes in
T7517 483-488 IN denotes above
T7516 473-482 VB denotes mentioned
T7515 463-472 NN denotes mediators
T7514 447-462 JJ denotes proinflammatory
T7513 443-446 CC denotes and
T7512 441-442 -COMMA- denotes ,
T7511 437-441 NN denotes MMP9
T7510 434-436 IN denotes of
T7509 419-433 NN denotes overexpression
T7508 417-418 -COMMA- denotes ,
T7507 409-417 NN denotes activity
T7506 401-408 NN denotes binding
T7505 397-400 NN denotes DNA
T7504 391-396 NN denotes NF-κB
T7503 388-390 IN denotes of
T7502 378-387 NN denotes elevation
T7501 370-377 VB denotes induced
T7500 363-369 NN denotes injury
T7499 355-362 NN denotes scratch
T7498 350-354 IN denotes that
T7497 341-349 VB denotes revealed
T7496 336-340 RB denotes also
T7495 328-335 NN denotes results
T7494 324-327 PRP-DOLLAR- denotes Our
T7493 321-322 -RRB- denotes ]
T7492 319-321 CD denotes 11
T7491 317-318 -COMMA- denotes ,
T7490 315-317 CD denotes 10
T7489 313-314 -COMMA- denotes ,
T7488 312-313 CD denotes 3
T7487 311-312 -LRB- denotes [
T7486 307-310 NNP denotes TBI
T7485 301-306 IN denotes after
T7484 293-300 NN denotes tissues
T7483 287-292 NN denotes brain
T7482 284-286 IN denotes in
T7481 282-283 -COMMA- denotes ,
T7480 278-282 NN denotes IL-6
T7479 274-277 CC denotes and
T7478 272-273 -COMMA- denotes ,
T7477 267-272 NN denotes IL-1β
T7476 265-266 -COMMA- denotes ,
T7475 260-265 NN denotes TNF-α
T7474 250-259 VB denotes including
T7473 248-249 -COMMA- denotes ,
T7472 239-248 NN denotes cytokines
T7471 223-238 JJ denotes proinflammatory
T7470 220-222 IN denotes of
T7469 212-219 NN denotes battery
T7468 210-211 DT denotes a
T7467 206-209 CC denotes and
T7466 201-205 NN denotes MMP9
T7465 198-200 IN denotes of
T7464 184-197 NN denotes transcription
T7463 176-183 VB denotes induces
T7462 172-175 CC denotes and
T7461 162-171 VB denotes activated
T7460 158-161 VB denotes was
T7459 155-157 PRP denotes it
T7458 150-154 IN denotes once
T7457 146-149 NN denotes DNA
T7456 141-145 IN denotes with
T7455 135-140 VB denotes binds
T7454 129-134 NN denotes NF-κB
T7453 127-128 -COMMA- denotes ,
T7452 121-127 NN denotes factor
T7451 110-120 NN denotes transcript
T7450 108-109 DT denotes a
T7449 105-107 IN denotes As
T7448 102-103 -RRB- denotes ]
T7447 101-102 CD denotes 9
T7446 99-100 -COMMA- denotes ,
T7445 98-99 CD denotes 2
T7444 97-98 -LRB- denotes [
T7443 90-96 NN denotes injury
T7442 80-89 JJ denotes traumatic
T7441 74-79 IN denotes after
T7440 69-73 NN denotes cord
T7439 62-68 JJ denotes spinal
T7438 58-61 CC denotes and
T7437 52-57 NN denotes brain
T7436 49-51 IN denotes in
T7435 39-48 VB denotes activated
T7434 36-38 VB denotes is
T7433 30-35 NN denotes NF-κB
T7432 25-29 IN denotes that
T7431 12-24 VB denotes demonstrated
T7430 7-11 VB denotes been
T7429 3-6 VB denotes has
T7428 0-2 PRP denotes It
R5967 T7428 T7429 arg1Of It,has
R5968 T7428 T7430 arg1Of It,been
R5969 T7428 T7431 arg2Of It,demonstrated
R5970 T7431 T7429 arg2Of demonstrated,has
R5971 T7431 T7430 arg2Of demonstrated,been
R5972 T7433 T7434 arg1Of NF-κB,is
R5973 T7433 T7435 arg2Of NF-κB,activated
R5974 T7435 T7431 arg3Of activated,demonstrated
R5975 T7435 T7432 arg1Of activated,that
R5976 T7435 T7434 arg2Of activated,is
R5977 T7435 T7436 arg1Of activated,in
R5978 T7435 T7441 arg1Of activated,after
R5979 T7435 T7444 arg1Of activated,[
R5980 T7437 T7438 arg1Of brain,and
R5981 T7438 T7436 arg2Of and,in
R5982 T7440 T7438 arg2Of cord,and
R5983 T7440 T7439 arg1Of cord,spinal
R5984 T7443 T7441 arg2Of injury,after
R5985 T7443 T7442 arg1Of injury,traumatic
R5986 T7445 T7444 arg2Of 2,[
R5987 T7445 T7446 arg1Of 2,","
R5988 T7447 T7446 arg2Of 9,","
R5989 T7448 T7444 arg3Of ],[
R5990 T7452 T7449 arg2Of factor,As
R5991 T7452 T7450 arg1Of factor,a
R5992 T7452 T7451 arg1Of factor,transcript
R5993 T7454 T7455 arg1Of NF-κB,binds
R5994 T7454 T7463 arg1Of NF-κB,induces
R5995 T7455 T7456 arg1Of binds,with
R5996 T7455 T7458 arg1Of binds,once
R5997 T7455 T7462 arg1Of binds,and
R5998 T7457 T7456 arg2Of DNA,with
R5999 T7459 T7460 arg1Of it,was
R6000 T7459 T7461 arg2Of it,activated
R6001 T7461 T7458 arg2Of activated,once
R6002 T7461 T7460 arg2Of activated,was
R6003 T7462 T7449 arg1Of and,As
R6004 T7462 T7453 arg1Of and,","
R6005 T7463 T7462 arg2Of induces,and
R6006 T7464 T7463 arg2Of transcription,induces
R6007 T7464 T7465 arg1Of transcription,of
R6008 T7464 T7470 arg1Of transcription,of
R6009 T7466 T7467 arg1Of MMP9,and
R6010 T7467 T7465 arg2Of and,of
R6011 T7469 T7467 arg2Of battery,and
R6012 T7469 T7468 arg1Of battery,a
R6013 T7472 T7470 arg2Of cytokines,of
R6014 T7472 T7471 arg1Of cytokines,proinflammatory
R6015 T7472 T7473 arg1Of cytokines,","
R6016 T7472 T7474 arg1Of cytokines,including
R6017 T7475 T7476 arg1Of TNF-α,","
R6018 T7476 T7479 arg1Of ",",and
R6019 T7477 T7476 arg2Of IL-1β,","
R6020 T7479 T7474 arg2Of and,including
R6021 T7479 T7478 arg1Of and,","
R6022 T7479 T7481 arg1Of and,","
R6023 T7479 T7482 arg1Of and,in
R6024 T7479 T7485 arg1Of and,after
R6025 T7480 T7479 arg2Of IL-6,and
R6026 T7484 T7482 arg2Of tissues,in
R6027 T7484 T7483 arg1Of tissues,brain
R6028 T7486 T7485 arg2Of TBI,after
R6029 T7486 T7487 arg1Of TBI,[
R6030 T7488 T7489 arg1Of 3,","
R6031 T7489 T7487 arg2Of ",",[
R6032 T7489 T7491 arg1Of ",",","
R6033 T7490 T7489 arg2Of 10,","
R6034 T7492 T7491 arg2Of 11,","
R6035 T7493 T7487 arg3Of ],[
R6036 T7495 T7494 arg1Of results,Our
R6037 T7495 T7497 arg1Of results,revealed
R6038 T7497 T7496 arg1Of revealed,also
R6039 T7500 T7499 arg1Of injury,scratch
R6040 T7500 T7501 arg1Of injury,induced
R6041 T7501 T7497 arg2Of induced,revealed
R6042 T7501 T7498 arg1Of induced,that
R6043 T7502 T7501 arg2Of elevation,induced
R6044 T7502 T7503 arg1Of elevation,of
R6045 T7507 T7504 arg1Of activity,NF-κB
R6046 T7507 T7505 arg1Of activity,DNA
R6047 T7507 T7506 arg1Of activity,binding
R6048 T7507 T7508 arg1Of activity,","
R6049 T7508 T7513 arg1Of ",",and
R6050 T7509 T7508 arg2Of overexpression,","
R6051 T7509 T7510 arg1Of overexpression,of
R6052 T7511 T7510 arg2Of MMP9,of
R6053 T7513 T7503 arg2Of and,of
R6054 T7513 T7512 arg1Of and,","
R6055 T7515 T7513 arg2Of mediators,and
R6056 T7515 T7514 arg1Of mediators,proinflammatory
R6057 T7515 T7516 arg2Of mediators,mentioned
R6058 T7516 T7517 arg1Of mentioned,above
R6059 T7516 T7518 arg1Of mentioned,in
R6060 T7520 T7518 arg2Of astrocytes,in
R6061 T7520 T7519 arg2Of astrocytes,cultured
R6062 T7521 T7522 arg1Of It,has
R6063 T7521 T7523 arg1Of It,been
R6064 T7521 T7524 arg2Of It,demonstrated
R6065 T7524 T7522 arg2Of demonstrated,has
R6066 T7524 T7523 arg2Of demonstrated,been
R6067 T7526 T7527 arg1Of there,is
R6068 T7527 T7524 arg3Of is,demonstrated
R6069 T7527 T7525 arg1Of is,that
R6070 T7530 T7527 arg2Of loop,is
R6071 T7530 T7528 arg1Of loop,an
R6072 T7530 T7529 arg1Of loop,autoregulatory
R6073 T7530 T7531 arg1Of loop,among
R6074 T7534 T7531 arg2Of mediators,among
R6075 T7534 T7532 arg1Of mediators,these
R6076 T7534 T7533 arg1Of mediators,proinflammatory
R6077 T7536 T7535 arg2Of example,For
R6078 T7538 T7539 arg1Of TNF-α,and
R6079 T7539 T7541 arg1Of and,are
R6080 T7540 T7539 arg2Of IL-1β,and
R6081 T7541 T7554 arg1Of are,and
R6082 T7543 T7541 arg2Of stimulators,are
R6083 T7543 T7542 arg1Of stimulators,potent
R6084 T7543 T7544 arg1Of stimulators,for
R6085 T7543 T7546 arg1Of stimulators,in
R6086 T7545 T7544 arg2Of MMP9,for
R6087 T7547 T7546 arg2Of astrocytes,in
R6088 T7547 T7548 arg1Of astrocytes,[
R6089 T7549 T7550 arg1Of 12,","
R6090 T7550 T7548 arg2Of ",",[
R6091 T7551 T7550 arg2Of 13,","
R6092 T7552 T7548 arg3Of ],[
R6093 T7554 T7535 arg1Of and,For
R6094 T7554 T7537 arg1Of and,","
R6095 T7554 T7553 arg1Of and,","
R6096 T7555 T7556 arg1Of IL-6,induces
R6097 T7556 T7560 arg1Of induces,in
R6098 T7556 T7569 arg1Of induces,and
R6099 T7557 T7556 arg2Of overexpression,induces
R6100 T7557 T7558 arg1Of overexpression,of
R6101 T7559 T7558 arg2Of MMP9,of
R6102 T7564 T7560 arg2Of cells,in
R6103 T7564 T7561 arg1Of cells,human
R6104 T7564 T7562 arg1Of cells,colon
R6105 T7564 T7563 arg1Of cells,carcinoma
R6106 T7564 T7565 arg1Of cells,[
R6107 T7566 T7565 arg2Of 14,[
R6108 T7567 T7565 arg3Of ],[
R6109 T7569 T7554 arg2Of and,and
R6110 T7569 T7568 arg1Of and,","
R6111 T7570 T7571 arg1Of TNF-α,and
R6112 T7571 T7574 arg1Of and,can
R6113 T7571 T7575 arg1Of and,induce
R6114 T7572 T7571 arg2Of IL-1β,and
R6115 T7575 T7569 arg2Of induce,and
R6116 T7575 T7573 arg1Of induce,also
R6117 T7575 T7574 arg2Of induce,can
R6118 T7575 T7579 arg1Of induce,[
R6119 T7576 T7575 arg2Of activation,induce
R6120 T7576 T7577 arg1Of activation,of
R6121 T7578 T7577 arg2Of NF-κB,of
R6122 T7580 T7579 arg2Of 15,[
R6123 T7580 T7581 arg1Of 15,","
R6124 T7582 T7581 arg2Of 16,","
R6125 T7583 T7579 arg3Of ],[
R6126 T7586 T7584 arg1Of loop,This
R6127 T7586 T7585 arg1Of loop,autoregulatory
R6128 T7586 T7588 arg1Of loop,aggravates
R6129 T7586 T7595 arg1Of loop,induces
R6130 T7588 T7594 arg1Of aggravates,and
R6131 T7591 T7588 arg2Of effect,aggravates
R6132 T7591 T7589 arg1Of effect,the
R6133 T7591 T7590 arg1Of effect,damaging
R6134 T7591 T7592 arg1Of effect,of
R6135 T7593 T7592 arg2Of inflammation,of
R6136 T7594 T7587 arg1Of and,extremely
R6137 T7595 T7594 arg2Of induces,and
R6138 T7597 T7595 arg2Of injury,induces
R6139 T7597 T7596 arg1Of injury,secondary
R6140 T7597 T7598 arg1Of injury,to
R6141 T7599 T7598 arg2Of brain,to
R6142 T7600 T7601 arg1Of It,is
R6143 T7604 T7601 arg2Of choice,is
R6144 T7604 T7602 arg1Of choice,a
R6145 T7604 T7603 arg1Of choice,good
R6146 T7604 T7605 arg1Of choice,for
R6147 T7606 T7605 arg2Of targeting,for
R6148 T7606 T7607 arg1Of targeting,on
R6149 T7606 T7611 modOf targeting,to
R6150 T7610 T7606 arg2Of factor,targeting
R6151 T7610 T7608 arg1Of factor,an
R6152 T7610 T7609 arg1Of factor,upstream
R6153 T7612 T7611 arg1Of prevent,to
R6154 T7612 T7616 arg1Of prevent,after
R6155 T7615 T7612 arg2Of loop,prevent
R6156 T7615 T7613 arg1Of loop,such
R6157 T7615 T7614 arg1Of loop,autoregulatory
R6158 T7617 T7616 arg2Of TBI,after

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T7325 790-795 Protein denotes IL-1β
T7324 734-738 Protein denotes MMP9
T7323 703-707 Protein denotes IL-6
T7322 670-674 Protein denotes MMP9
T7321 637-642 Protein denotes IL-1β
T7320 437-441 Protein denotes MMP9
T7319 278-282 Protein denotes IL-6
T7318 267-272 Protein denotes IL-1β
T7317 201-205 Protein denotes MMP9

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T8387 694-705 http://www.uniprot.org/uniprot/P35225 denotes 13], and IL
T8382 703-707 http://www.uniprot.org/uniprot/P05231 denotes IL-6
T8381 278-282 http://www.uniprot.org/uniprot/P05231 denotes IL-6
T8375 790-795 http://www.uniprot.org/uniprot/P01584 denotes IL-1β
T8374 637-642 http://www.uniprot.org/uniprot/P01584 denotes IL-1β
T8373 267-272 http://www.uniprot.org/uniprot/P01584 denotes IL-1β
T8367 780-785 http://www.uniprot.org/uniprot/P01375 denotes TNF-α
T8366 627-632 http://www.uniprot.org/uniprot/P01375 denotes TNF-α
T8365 260-265 http://www.uniprot.org/uniprot/P01375 denotes TNF-α
T8360 780-783 http://www.uniprot.org/uniprot/P01375 denotes TNF
T8359 627-630 http://www.uniprot.org/uniprot/P01375 denotes TNF
T8358 260-263 http://www.uniprot.org/uniprot/P01375 denotes TNF

UBERON-AE

Id Subject Object Predicate Lexical cue
T7206 748-753 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colon
T7204 293-300 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissues
T7203 62-73 http://purl.obolibrary.org/obo/UBERON_0002240 denotes spinal cord
T7196 956-961 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T7195 287-292 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T7194 52-57 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain

GO-BP

Id Subject Object Predicate Lexical cue
T7349 911-923 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T7346 184-197 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T7343 812-831 http://purl.obolibrary.org/obo/GO_0051092 denotes activation of NF-κB
T7342 30-48 http://purl.obolibrary.org/obo/GO_0051092 denotes NF-κB is activated

GO-MF

Id Subject Object Predicate Lexical cue
T8284 703-707 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6
T8283 278-282 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6
T8281 401-408 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T8279 397-408 http://purl.obolibrary.org/obo/GO_0003677 denotes DNA binding
T8290 694-705 http://purl.obolibrary.org/obo/GO_0005144 denotes 13], and IL

GO-CC

Id Subject Object Predicate Lexical cue
T8296 764-769 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T7222 963-1065 Sentence denotes It is a good choice for targeting on an upstream factor to prevent such autoregulatory loop after TBI.
T7221 842-962 Sentence denotes This autoregulatory loop extremely aggravates the damaging effect of inflammation and induces secondary injury to brain.
T7220 614-841 Sentence denotes For example, TNF-α and IL-1β are potent stimulators for MMP9 in astrocytes [12, 13], and IL-6 induces overexpression of MMP9 in human colon carcinoma cells [14], and TNF-α and IL-1β also can induce activation of NF-κB [15, 16].
T7219 513-613 Sentence denotes It has been demonstrated that there is an autoregulatory loop among these proinflammatory mediators.
T7218 324-512 Sentence denotes Our results also revealed that scratch injury induced elevation of NF-κB DNA binding activity, overexpression of MMP9, and proinflammatory mediators mentioned above in cultured astrocytes.
T7217 105-323 Sentence denotes As a transcript factor, NF-κB binds with DNA once it was activated and induces transcription of MMP9 and a battery of proinflammatory cytokines, including TNF-α, IL-1β, and IL-6, in brain tissues after TBI [3, 10, 11].
T7216 0-104 Sentence denotes It has been demonstrated that NF-κB is activated in brain and spinal cord after traumatic injury [2, 9].
T162 0-104 Sentence denotes It has been demonstrated that NF-κB is activated in brain and spinal cord after traumatic injury [2, 9].
T163 105-323 Sentence denotes As a transcript factor, NF-κB binds with DNA once it was activated and induces transcription of MMP9 and a battery of proinflammatory cytokines, including TNF-α, IL-1β, and IL-6, in brain tissues after TBI [3, 10, 11].
T164 324-512 Sentence denotes Our results also revealed that scratch injury induced elevation of NF-κB DNA binding activity, overexpression of MMP9, and proinflammatory mediators mentioned above in cultured astrocytes.
T165 513-613 Sentence denotes It has been demonstrated that there is an autoregulatory loop among these proinflammatory mediators.
T166 614-841 Sentence denotes For example, TNF-α and IL-1β are potent stimulators for MMP9 in astrocytes [12, 13], and IL-6 induces overexpression of MMP9 in human colon carcinoma cells [14], and TNF-α and IL-1β also can induce activation of NF-κB [15, 16].
T167 842-962 Sentence denotes This autoregulatory loop extremely aggravates the damaging effect of inflammation and induces secondary injury to brain.
T168 963-1065 Sentence denotes It is a good choice for targeting on an upstream factor to prevent such autoregulatory loop after TBI.

ICD10

Id Subject Object Predicate Lexical cue
T8272 946-952 http://purl.bioontology.org/ontology/ICD10/T14.9 denotes injury
T8271 363-369 http://purl.bioontology.org/ontology/ICD10/T14.9 denotes injury
T8270 90-96 http://purl.bioontology.org/ontology/ICD10/T14.9 denotes injury

simple1

Id Subject Object Predicate Lexical cue
T8340 790-795 Protein denotes IL-1β
T8339 734-738 Protein denotes MMP9
T8338 703-707 Protein denotes IL-6
T8337 670-674 Protein denotes MMP9
T8336 637-642 Protein denotes IL-1β
T8335 437-441 Protein denotes MMP9
T8334 278-282 Protein denotes IL-6
T8333 267-272 Protein denotes IL-1β
T8332 201-205 Protein denotes MMP9

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T9924 716-730 Positive_regulation denotes overexpression
T9923 708-715 Positive_regulation denotes induces
T9922 419-433 Positive_regulation denotes overexpression
T9921 419-433 Gene_expression denotes overexpression
T9920 176-183 Positive_regulation denotes induces
T9919 184-197 Transcription denotes transcription
T9899 670-674 Protein denotes MMP9
T9898 637-642 Protein denotes IL-1β
T9897 790-795 Protein denotes IL-1β
T9896 734-738 Protein denotes MMP9
T9895 703-707 Protein denotes IL-6
T9894 437-441 Protein denotes MMP9
T9893 278-282 Protein denotes IL-6
T9892 267-272 Protein denotes IL-1β
T9891 201-205 Protein denotes MMP9
R8154 T9891 T9919 themeOf MMP9,transcription
R8156 T9894 T9921 themeOf MMP9,overexpression
R8158 T9896 T9924 themeOf MMP9,overexpression
R8176 T9919 T9920 themeOf transcription,induces
R8177 T9921 T9922 themeOf overexpression,overexpression
R8181 T9924 T9923 themeOf overexpression,induces

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T8479 708-715 Positive_regulation denotes induces
T8478 716-730 Positive_regulation denotes overexpression
T8477 419-433 Positive_regulation denotes overexpression
T8476 370-377 Positive_regulation denotes induced
T8475 176-183 Positive_regulation denotes induces
T8474 184-197 Transcription denotes transcription
T8454 637-642 Protein denotes IL-1β
T8453 790-795 Protein denotes IL-1β
T8452 734-738 Protein denotes MMP9
T8451 703-707 Protein denotes IL-6
T8450 437-441 Protein denotes MMP9
T8449 278-282 Protein denotes IL-6
T8448 267-272 Protein denotes IL-1β
T8447 201-205 Protein denotes MMP9
T8455 670-674 Protein denotes MMP9
R6872 T8447 T8474 themeOf MMP9,transcription
R6873 T8450 T8477 themeOf MMP9,overexpression
R6874 T8450 T8476 themeOf MMP9,induced
R6875 T8452 T8478 themeOf MMP9,overexpression
R6898 T8474 T8475 themeOf transcription,induces
R6899 T8478 T8479 themeOf overexpression,induces

DLUT931

Id Subject Object Predicate Lexical cue
T8429 708-715 Positive_regulation denotes induces
T8428 716-730 Positive_regulation denotes overexpression
T8427 370-377 Positive_regulation denotes induced
T8426 419-433 Positive_regulation denotes overexpression
T8425 176-183 Positive_regulation denotes induces
T8424 184-197 Transcription denotes transcription
T8404 670-674 Protein denotes MMP9
T8403 637-642 Protein denotes IL-1β
T8402 790-795 Protein denotes IL-1β
T8401 734-738 Protein denotes MMP9
T8400 703-707 Protein denotes IL-6
T8399 437-441 Protein denotes MMP9
T8398 278-282 Protein denotes IL-6
T8397 267-272 Protein denotes IL-1β
T8396 201-205 Protein denotes MMP9
R6851 T8424 T8425 themeOf transcription,induces
R6852 T8424 T8425 themeOf transcription,induces
R6853 T8426 T8427 themeOf overexpression,induced
R6854 T8428 T8429 themeOf overexpression,induces
R6821 T8396 T8424 themeOf MMP9,transcription
R6822 T8398 T8424 themeOf IL-6,transcription
R6823 T8399 T8426 themeOf MMP9,overexpression
R6824 T8400 T8429 causeOf IL-6,induces
R6825 T8401 T8428 themeOf MMP9,overexpression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T10098 716-738 Positive_regulation denotes overexpression of MMP9
T10097 716-738 Gene_expression denotes overexpression of MMP9
T10075 25-96 Positive_regulation denotes that NF-κB is activated in brain and spinal cord after traumatic injury
T10037 434-442 Protein denotes of MMP9,
T10035 492-511 Entity denotes cultured astrocytes
T10034 129-134 Protein denotes NF-κB
T10027 260-265 Protein denotes TNF-α
T10015 823-831 Protein denotes of NF-κB
T10002 141-149 Entity denotes with DNA
T9996 391-442 Protein denotes NF-κB DNA binding activity, overexpression of MMP9,
T9984 278-282 Protein denotes IL-6
T9983 780-785 Protein denotes TNF-α
T9981 790-795 Protein denotes IL-1β
T9979 637-642 Protein denotes IL-1β
T9962 703-707 Protein denotes IL-6
T9960 198-205 Protein denotes of MMP9
T9957 731-738 Protein denotes of MMP9
T9953 678-693 Entity denotes astrocytes [12,
T9952 108-120 Protein denotes a transcript
T9948 267-272 Protein denotes IL-1β
T9947 25-35 Protein denotes that NF-κB
T9941 670-674 Protein denotes MMP9
T9940 239-282 Protein denotes cytokines, including TNF-α, IL-1β, and IL-6
T10064 184-205 Transcription denotes transcription of MMP9
T10055 812-840 Positive_regulation denotes activation of NF-κB [15, 16]
T10054 129-171 Binding denotes NF-κB binds with DNA once it was activated
T10042 627-632 Protein denotes TNF-α
R8180 T9947 T10075 themeOf that NF-κB,that NF-κB is activated in brain and spinal cord after traumatic injury
R8187 T9957 T10097 themeOf of MMP9,overexpression of MMP9
R8188 T9957 T10098 themeOf of MMP9,overexpression of MMP9
R8192 T9960 T10064 themeOf of MMP9,transcription of MMP9
R8208 T10015 T10055 themeOf of NF-κB,"activation of NF-κB [15, 16]"
R8218 T10002 T10054 themeOf with DNA,NF-κB binds with DNA once it was activated
R8231 T10034 T10054 themeOf NF-κB,NF-κB binds with DNA once it was activated

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T9001 1064-1065 . denotes .
T9000 1061-1064 NNP denotes TBI
T8999 1055-1060 IN denotes after
T8998 1050-1054 NN denotes loop
T8997 1035-1049 JJ denotes autoregulatory
T8996 1030-1034 JJ denotes such
T8995 1022-1029 VB denotes prevent
T8994 1019-1021 TO denotes to
T8993 1012-1018 NN denotes factor
T8992 1003-1011 JJ denotes upstream
T8991 1000-1002 DT denotes an
T8990 997-999 IN denotes on
T8989 987-996 VBG denotes targeting
T8988 983-986 IN denotes for
T8987 976-982 NN denotes choice
T8986 971-975 JJ denotes good
T8985 969-970 DT denotes a
T8984 966-968 VBZ denotes is
T8983 963-965 PRP denotes It
T8982 961-962 . denotes .
T8981 956-961 NN denotes brain
T8980 953-955 TO denotes to
T8979 946-952 NN denotes injury
T8978 936-945 JJ denotes secondary
T8977 928-935 VBZ denotes induces
T8976 924-927 CC denotes and
T8975 911-923 NN denotes inflammation
T8974 908-910 IN denotes of
T8973 901-907 NN denotes effect
T8972 892-900 JJ denotes damaging
T8971 888-891 DT denotes the
T8970 877-887 VBZ denotes aggravates
T8969 867-876 RB denotes extremely
T8968 862-866 NN denotes loop
T8967 847-861 JJ denotes autoregulatory
T8966 842-846 DT denotes This
T8965 840-841 . denotes .
T8964 839-840 NN denotes ]
T8963 837-839 CD denotes 16
T8962 835-836 , denotes ,
T8961 833-835 CD denotes 15
T8960 832-833 NNP denotes [
T8959 826-831 NNP denotes NF-κB
T8958 823-825 IN denotes of
T8957 812-822 NN denotes activation
T8956 805-811 VB denotes induce
T8955 801-804 MD denotes can
T8954 796-800 RB denotes also
T8953 790-795 NNP denotes IL-1β
T8952 786-789 CC denotes and
T8951 780-785 NNP denotes TNF-α
T8950 776-779 CC denotes and
T8949 774-775 , denotes ,
T8948 773-774 NNP denotes ]
T8947 771-773 CD denotes 14
T8946 770-771 NNP denotes [
T8945 764-769 NNS denotes cells
T8944 754-763 NN denotes carcinoma
T8943 748-753 NN denotes colon
T8942 742-747 JJ denotes human
T8941 739-741 IN denotes in
T8940 734-738 NNP denotes MMP9
T8939 731-733 IN denotes of
T8938 716-730 NN denotes overexpression
T8937 708-715 VBZ denotes induces
T8936 703-707 NNP denotes IL-6
T8935 699-702 CC denotes and
T8934 697-698 , denotes ,
T8933 696-697 NNP denotes ]
T8932 694-696 CD denotes 13
T8931 692-693 , denotes ,
T8930 690-692 CD denotes 12
T8929 689-690 NNP denotes [
T8928 678-688 NNS denotes astrocytes
T8927 675-677 IN denotes in
T8926 670-674 NNP denotes MMP9
T8925 666-669 IN denotes for
T8924 654-665 NNS denotes stimulators
T8923 647-653 JJ denotes potent
T8922 643-646 VBP denotes are
T8921 637-642 NNP denotes IL-1β
T8920 633-636 CC denotes and
T8919 627-632 NNP denotes TNF-α
T8918 625-626 , denotes ,
T8917 618-625 NN denotes example
T8916 614-617 IN denotes For
T8915 612-613 . denotes .
T8914 603-612 NNS denotes mediators
T8913 587-602 JJ denotes proinflammatory
T8912 581-586 DT denotes these
T8911 575-580 IN denotes among
T8910 570-574 NN denotes loop
T8909 555-569 JJ denotes autoregulatory
T8908 552-554 DT denotes an
T8907 549-551 VBZ denotes is
T8906 543-548 EX denotes there
T8905 538-542 IN denotes that
T8904 525-537 VBN denotes demonstrated
T8903 520-524 VBN denotes been
T8902 516-519 VBZ denotes has
T8901 513-515 PRP denotes It
T8900 511-512 . denotes .
T8899 501-511 NNS denotes astrocytes
T8832 129-134 JJ denotes NF-κB
T8831 127-128 , denotes ,
T8830 121-127 NN denotes factor
T8829 110-120 NN denotes transcript
T8828 108-109 DT denotes a
T8827 105-107 IN denotes As
T8826 103-104 . denotes .
T8825 102-103 NN denotes ]
T8824 101-102 CD denotes 9
T8823 99-100 , denotes ,
T8822 98-99 CD denotes 2
T8821 97-98 NN denotes [
T8820 90-96 NN denotes injury
T8819 80-89 JJ denotes traumatic
T8818 74-79 IN denotes after
T8817 69-73 NN denotes cord
T8816 62-68 JJ denotes spinal
T8815 58-61 CC denotes and
T8814 52-57 NN denotes brain
T8813 49-51 IN denotes in
T8812 39-48 VBN denotes activated
T8811 36-38 VBZ denotes is
T8810 30-35 NNP denotes NF-κB
T8809 25-29 IN denotes that
T8808 12-24 VBN denotes demonstrated
T8807 7-11 VBN denotes been
T8806 3-6 VBZ denotes has
T8805 0-2 PRP denotes It
T8898 492-500 JJ denotes cultured
T8897 489-491 IN denotes in
T8896 483-488 IN denotes above
T8895 473-482 VBN denotes mentioned
T8894 463-472 NNS denotes mediators
T8893 447-462 JJ denotes proinflammatory
T8892 443-446 CC denotes and
T8891 441-442 , denotes ,
T8890 437-441 NNP denotes MMP9
T8889 434-436 IN denotes of
T8888 419-433 NN denotes overexpression
T8887 417-418 , denotes ,
T8886 409-417 NN denotes activity
T8885 401-408 JJ denotes binding
T8884 397-400 NNP denotes DNA
T8883 391-396 NNP denotes NF-κB
T8882 388-390 IN denotes of
T8881 378-387 NN denotes elevation
T8880 370-377 VBD denotes induced
T8879 363-369 NN denotes injury
T8878 355-362 NN denotes scratch
T8877 350-354 IN denotes that
T8876 341-349 VBD denotes revealed
T8875 336-340 RB denotes also
T8874 328-335 NNS denotes results
T8873 324-327 PRP$ denotes Our
T8872 322-323 . denotes .
T8871 321-322 NN denotes ]
T8870 319-321 CD denotes 11
T8869 317-318 , denotes ,
T8868 315-317 CD denotes 10
T8867 313-314 , denotes ,
T8866 312-313 CD denotes 3
T8865 311-312 NNP denotes [
T8864 307-310 NNP denotes TBI
T8863 301-306 IN denotes after
T8853 260-265 NNP denotes TNF-α
T8852 250-259 VBG denotes including
T8851 248-249 , denotes ,
T8850 239-248 NNS denotes cytokines
T8849 223-238 JJ denotes proinflammatory
T8848 220-222 IN denotes of
T8847 212-219 NN denotes battery
T8846 210-211 DT denotes a
T8845 206-209 CC denotes and
T8844 201-205 NNP denotes MMP9
T8843 198-200 IN denotes of
T8842 184-197 NN denotes transcription
T8841 176-183 VBZ denotes induces
T8840 172-175 CC denotes and
T8839 162-171 VBN denotes activated
T8838 158-161 VBD denotes was
T8837 155-157 PRP denotes it
T8836 150-154 IN denotes once
T8835 146-149 NNP denotes DNA
T8834 141-145 IN denotes with
T8833 135-140 NNS denotes binds
T8862 293-300 NNS denotes tissues
T8861 287-292 NN denotes brain
T8860 284-286 IN denotes in
T8859 282-283 , denotes ,
T8858 278-282 NNP denotes IL-6
T8857 274-277 CC denotes and
T8856 272-273 , denotes ,
T8855 267-272 NNP denotes IL-1β
T8854 265-266 , denotes ,
R7133 T8805 T8808 nsubjpass It,demonstrated
R7134 T8806 T8808 aux has,demonstrated
R7135 T8807 T8808 auxpass been,demonstrated
R7136 T8808 T8808 ROOT demonstrated,demonstrated
R7137 T8809 T8812 mark that,activated
R7138 T8810 T8812 nsubjpass NF-κB,activated
R7139 T8811 T8812 auxpass is,activated
R7140 T8812 T8808 ccomp activated,demonstrated
R7141 T8813 T8812 prep in,activated
R7142 T8814 T8813 pobj brain,in
R7143 T8815 T8814 cc and,brain
R7144 T8816 T8817 amod spinal,cord
R7145 T8817 T8814 conj cord,brain
R7146 T8818 T8812 prep after,activated
R7147 T8819 T8821 amod traumatic,[
R7148 T8820 T8821 compound injury,[
R7149 T8821 T8818 pobj [,after
R7150 T8822 T8821 nummod 2,[
R7167 T8839 T8839 ROOT activated,activated
R7168 T8840 T8839 cc and,activated
R7169 T8841 T8839 conj induces,activated
R7170 T8842 T8841 dobj transcription,induces
R7171 T8843 T8842 prep of,transcription
R7172 T8844 T8843 pobj MMP9,of
R7173 T8845 T8842 cc and,transcription
R7174 T8846 T8847 det a,battery
R7175 T8847 T8842 conj battery,transcription
R7176 T8848 T8847 prep of,battery
R7177 T8849 T8850 amod proinflammatory,cytokines
R7178 T8850 T8848 pobj cytokines,of
R7179 T8851 T8850 punct ",",cytokines
R7180 T8852 T8850 prep including,cytokines
R7181 T8853 T8852 pobj TNF-α,including
R7182 T8854 T8853 punct ",",TNF-α
R7183 T8855 T8853 conj IL-1β,TNF-α
R7184 T8856 T8855 punct ",",IL-1β
R7185 T8857 T8855 cc and,IL-1β
R7186 T8858 T8855 conj IL-6,IL-1β
R7187 T8859 T8850 punct ",",cytokines
R7188 T8860 T8847 prep in,battery
R7189 T8861 T8862 compound brain,tissues
R7190 T8862 T8860 pobj tissues,in
R7191 T8863 T8841 prep after,induces
R7192 T8864 T8865 compound TBI,[
R7193 T8865 T8863 pobj [,after
R7194 T8866 T8868 quantmod 3,10
R7195 T8867 T8868 punct ",",10
R7196 T8868 T8871 nummod 10,]
R7197 T8869 T8870 punct ",",11
R7198 T8870 T8871 nummod 11,]
R7199 T8871 T8865 appos ],[
R7200 T8872 T8839 punct .,activated
R7201 T8873 T8874 poss Our,results
R7202 T8874 T8876 nsubj results,revealed
R7203 T8875 T8876 advmod also,revealed
R7204 T8876 T8876 ROOT revealed,revealed
R7205 T8877 T8880 mark that,induced
R7206 T8878 T8879 compound scratch,injury
R7207 T8879 T8880 nsubj injury,induced
R7208 T8880 T8876 ccomp induced,revealed
R7209 T8881 T8880 dobj elevation,induced
R7210 T8882 T8881 prep of,elevation
R7211 T8883 T8884 compound NF-κB,DNA
R7212 T8884 T8882 pobj DNA,of
R7213 T8885 T8886 amod binding,activity
R7214 T8886 T8880 conj activity,induced
R7215 T8887 T8886 punct ",",activity
R7216 T8888 T8886 conj overexpression,activity
R7217 T8889 T8888 prep of,overexpression
R7218 T8890 T8889 pobj MMP9,of
R7219 T8891 T8888 punct ",",overexpression
R7220 T8892 T8888 cc and,overexpression
R7221 T8893 T8894 amod proinflammatory,mediators
R7222 T8894 T8888 conj mediators,overexpression
R7223 T8895 T8894 acl mentioned,mediators
R7224 T8896 T8895 advmod above,mentioned
R7225 T8897 T8895 prep in,mentioned
R7226 T8898 T8899 amod cultured,astrocytes
R7227 T8899 T8897 pobj astrocytes,in
R7228 T8900 T8876 punct .,revealed
R7248 T8920 T8919 cc and,TNF-α
R7249 T8921 T8919 conj IL-1β,TNF-α
R7250 T8922 T8922 ROOT are,are
R7251 T8923 T8924 amod potent,stimulators
R7252 T8924 T8922 attr stimulators,are
R7253 T8925 T8924 prep for,stimulators
R7254 T8926 T8925 pobj MMP9,for
R7255 T8927 T8924 prep in,stimulators
R7256 T8928 T8927 pobj astrocytes,in
R7257 T8929 T8933 nmod [,]
R7258 T8930 T8933 nummod 12,]
R7259 T8931 T8933 punct ",",]
R7260 T8932 T8933 nummod 13,]
R7261 T8933 T8937 nsubj ],induces
R7262 T8934 T8933 punct ",",]
R7263 T8935 T8933 cc and,]
R7264 T8936 T8933 conj IL-6,]
R7265 T8937 T8937 ROOT induces,induces
R7266 T8938 T8937 dobj overexpression,induces
R7267 T8939 T8938 prep of,overexpression
R7268 T8940 T8939 pobj MMP9,of
R7269 T8941 T8938 prep in,overexpression
R7270 T8942 T8944 amod human,carcinoma
R7271 T8943 T8944 compound colon,carcinoma
R7272 T8944 T8945 compound carcinoma,cells
R7273 T8945 T8941 pobj cells,in
R7274 T8946 T8948 nmod [,]
R7275 T8947 T8948 nummod 14,]
R7276 T8948 T8937 dobj ],induces
R7277 T8949 T8948 punct ",",]
R7278 T8950 T8948 cc and,]
R7279 T8951 T8948 conj TNF-α,]
R7280 T8952 T8951 cc and,TNF-α
R7281 T8953 T8951 conj IL-1β,TNF-α
R7282 T8954 T8956 advmod also,induce
R7283 T8955 T8956 aux can,induce
R7284 T8956 T8937 conj induce,induces
R7285 T8957 T8956 dobj activation,induce
R7286 T8958 T8957 prep of,activation
R7287 T8959 T8960 compound NF-κB,[
R7288 T8960 T8958 pobj [,of
R7289 T8961 T8960 nummod 15,[
R7290 T8962 T8960 punct ",",[
R7291 T8963 T8964 nummod 16,]
R7292 T8964 T8960 appos ],[
R7293 T8965 T8937 punct .,induces
R7294 T8966 T8968 det This,loop
R7295 T8967 T8968 amod autoregulatory,loop
R7296 T8968 T8970 nsubj loop,aggravates
R7297 T8969 T8970 advmod extremely,aggravates
R7298 T8970 T8970 ROOT aggravates,aggravates
R7299 T8971 T8973 det the,effect
R7300 T8972 T8973 amod damaging,effect
R7301 T8973 T8970 dobj effect,aggravates
R7302 T8974 T8973 prep of,effect
R7303 T8975 T8974 pobj inflammation,of
R7304 T8976 T8970 cc and,aggravates
R7305 T8977 T8970 conj induces,aggravates
R7306 T8978 T8979 amod secondary,injury
R7307 T8979 T8977 dobj injury,induces
R7327 T8998 T8995 dobj loop,prevent
R7330 T8999 T8998 prep after,loop
R7333 T9000 T8999 pobj TBI,after
R7336 T9001 T8984 punct .,is
R7151 T8823 T8821 punct ",",[
R7152 T8824 T8825 nummod 9,]
R7153 T8825 T8821 appos ],[
R7154 T8826 T8808 punct .,demonstrated
R7155 T8827 T8839 prep As,activated
R7156 T8828 T8830 det a,factor
R7157 T8829 T8830 compound transcript,factor
R7158 T8830 T8827 pobj factor,As
R7159 T8831 T8839 punct ",",activated
R7160 T8832 T8833 amod NF-κB,binds
R7161 T8833 T8839 nsubjpass binds,activated
R7162 T8834 T8833 prep with,binds
R7163 T8835 T8834 pobj DNA,with
R7164 T8836 T8839 mark once,activated
R7165 T8837 T8839 nsubjpass it,activated
R7166 T8838 T8839 auxpass was,activated
R7229 T8901 T8904 nsubjpass It,demonstrated
R7230 T8902 T8904 aux has,demonstrated
R7231 T8903 T8904 auxpass been,demonstrated
R7232 T8904 T8904 ROOT demonstrated,demonstrated
R7233 T8905 T8907 mark that,is
R7234 T8906 T8907 expl there,is
R7235 T8907 T8904 ccomp is,demonstrated
R7236 T8908 T8910 det an,loop
R7237 T8909 T8910 amod autoregulatory,loop
R7238 T8910 T8907 attr loop,is
R7239 T8911 T8910 prep among,loop
R7240 T8912 T8914 det these,mediators
R7241 T8913 T8914 amod proinflammatory,mediators
R7242 T8914 T8911 pobj mediators,among
R7243 T8915 T8904 punct .,demonstrated
R7244 T8916 T8922 prep For,are
R7245 T8917 T8916 pobj example,For
R7246 T8918 T8922 punct ",",are
R7247 T8919 T8922 nsubj TNF-α,are
R7308 T8980 T8977 prep to,induces
R7309 T8981 T8980 pobj brain,to
R7310 T8982 T8970 punct .,aggravates
R7311 T8983 T8984 nsubj It,is
R7312 T8984 T8984 ROOT is,is
R7313 T8985 T8987 det a,choice
R7314 T8986 T8987 amod good,choice
R7315 T8987 T8984 attr choice,is
R7316 T8988 T8987 prep for,choice
R7317 T8989 T8988 pcomp targeting,for
R7318 T8990 T8989 prep on,targeting
R7319 T8991 T8993 det an,factor
R7320 T8992 T8993 amod upstream,factor
R7321 T8993 T8990 pobj factor,on
R7322 T8994 T8995 aux to,prevent
R7323 T8995 T8993 acl prevent,factor
R7324 T8996 T8998 amod such,loop
R7325 T8997 T8998 amod autoregulatory,loop

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T8598 805-811 Positive_regulation denotes induce
T8597 805-811 Positive_regulation denotes induce
T8596 708-715 Positive_regulation denotes induces
T8595 812-822 Positive_regulation denotes activation
T8594 716-730 Positive_regulation denotes overexpression
T8593 654-665 Positive_regulation denotes stimulators
T8592 654-665 Positive_regulation denotes stimulators
T8591 826-831 Protein denotes NF-κB
T8590 790-795 Protein denotes IL-1β
T8589 780-785 Protein denotes TNF-α
T8588 734-738 Protein denotes MMP9
T8587 703-707 Protein denotes IL-6
T8586 670-674 Protein denotes MMP9
T8585 637-642 Protein denotes IL-1β
T8584 627-632 Protein denotes TNF-α
T8583 378-387 Positive_regulation denotes elevation
T8582 370-377 Positive_regulation denotes induced
T8581 370-377 Positive_regulation denotes induced
T8580 370-377 Positive_regulation denotes induced
T8579 419-433 Positive_regulation denotes overexpression
T8578 419-433 Gene_expression denotes overexpression
T8577 378-387 Positive_regulation denotes elevation
T8576 437-441 Protein denotes MMP9
T8575 391-396 Protein denotes NF-κB
T8574 176-183 Positive_regulation denotes induces
T8573 184-197 Transcription denotes transcription
T8572 278-282 Protein denotes IL-6
T8571 267-272 Protein denotes IL-1β
T8570 260-265 Protein denotes TNF-α
T8569 201-205 Protein denotes MMP9
T8568 129-134 Protein denotes NF-κB
T8567 39-48 Positive_regulation denotes activated
T8566 30-35 Protein denotes NF-κB
R6958 T8566 T8567 themeOf NF-κB,activated
R6959 T8569 T8573 themeOf MMP9,transcription
R6960 T8573 T8574 themeOf transcription,induces
R6961 T8574 T8568 Cause induces,NF-κB
R6962 T8575 T8577 themeOf NF-κB,elevation
R6963 T8576 T8578 themeOf MMP9,overexpression
R6964 T8577 T8580 themeOf elevation,induced
R6965 T8578 T8579 themeOf overexpression,overexpression
R6966 T8578 T8581 themeOf overexpression,induced
R6967 T8578 T8583 themeOf overexpression,elevation
R6968 T8579 T8582 themeOf overexpression,induced
R6969 T8586 T8592 themeOf MMP9,stimulators
R6970 T8586 T8593 themeOf MMP9,stimulators
R6971 T8588 T8594 themeOf MMP9,overexpression
R6972 T8591 T8595 themeOf NF-κB,activation
R6973 T8592 T8584 Cause stimulators,TNF-α
R6974 T8593 T8585 Cause stimulators,IL-1β
R6975 T8594 T8596 themeOf overexpression,induces
R6976 T8595 T8597 themeOf activation,induce
R6977 T8595 T8598 themeOf activation,induce
R6978 T8596 T8587 Cause induces,IL-6
R6979 T8597 T8589 Cause induce,TNF-α
R6980 T8598 T8590 Cause induce,IL-1β

testone

Id Subject Object Predicate Lexical cue
T7083 135-140 Binding denotes binds
T7063 790-795 Protein denotes IL-1β
T7062 734-738 Protein denotes MMP9
T7061 703-707 Protein denotes IL-6
T7060 670-674 Protein denotes MMP9
T7059 637-642 Protein denotes IL-1β
T7058 437-441 Protein denotes MMP9
T7057 278-282 Protein denotes IL-6
T7056 267-272 Protein denotes IL-1β
T7055 201-205 Protein denotes MMP9

test3

Id Subject Object Predicate Lexical cue
T7119 790-795 Protein denotes IL-1β
T7118 734-738 Protein denotes MMP9
T7117 703-707 Protein denotes IL-6
T7116 670-674 Protein denotes MMP9
T7115 637-642 Protein denotes IL-1β
T7114 437-441 Protein denotes MMP9
T7113 278-282 Protein denotes IL-6
T7112 267-272 Protein denotes IL-1β
T7111 201-205 Protein denotes MMP9
T7155 790-795 Protein denotes IL-1β
T7154 734-738 Protein denotes MMP9
T7153 716-730 Positive_regulation denotes overexpression
T7152 708-715 Positive_regulation denotes induces
T7151 703-707 Protein denotes IL-6
T7150 670-674 Protein denotes MMP9
T7149 637-642 Protein denotes IL-1β
T7148 437-441 Protein denotes MMP9
T7147 419-433 Positive_regulation denotes overexpression
T7146 278-282 Protein denotes IL-6
T7145 267-272 Protein denotes IL-1β
T7144 201-205 Protein denotes MMP9
T7143 184-197 Transcription denotes transcription
T7142 176-183 Positive_regulation denotes induces
R5840 T7143 T7142 themeOf transcription,induces
R5841 T7144 T7143 themeOf MMP9,transcription
R5842 T7145 T7143 themeOf IL-1β,transcription
R5843 T7146 T7143 themeOf IL-6,transcription
R5844 T7148 T7147 themeOf MMP9,overexpression
R5845 T7151 T7152 causeOf IL-6,induces
R5846 T7153 T7152 themeOf overexpression,induces
R5847 T7154 T7153 themeOf MMP9,overexpression