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PMC:3317373 / 15541-15610 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T7396 59-69 NN denotes astrocytes
T7395 50-58 VB denotes cultured
T7394 47-49 IN denotes in
T7393 42-46 NN denotes MMP9
T7392 38-41 CC denotes and
T7391 36-37 -COMMA- denotes ,
T7390 32-36 NN denotes IL-6
T7389 30-31 -COMMA- denotes ,
T7388 25-30 NN denotes IL-1β
T7387 23-24 -COMMA- denotes ,
T7386 18-23 NN denotes TNF-α
T7385 15-17 IN denotes of
T7384 0-14 NN denotes overexpression
R5925 T7384 T7385 arg1Of overexpression,of
R5926 T7386 T7387 arg1Of TNF-α,","
R5927 T7387 T7389 arg1Of ",",","
R5928 T7388 T7387 arg2Of IL-1β,","
R5929 T7389 T7392 arg1Of ",",and
R5930 T7390 T7389 arg2Of IL-6,","
R5931 T7392 T7385 arg2Of and,of
R5932 T7392 T7391 arg1Of and,","
R5933 T7392 T7394 arg1Of and,in
R5934 T7393 T7392 arg2Of MMP9,and
R5935 T7396 T7394 arg2Of astrocytes,in
R5936 T7396 T7395 arg2Of astrocytes,cultured

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T7316 42-46 Protein denotes MMP9
T7315 32-36 Protein denotes IL-6
T7314 25-30 Protein denotes IL-1β

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T8372 25-30 http://www.uniprot.org/uniprot/P01584 denotes IL-1β
T8364 18-23 http://www.uniprot.org/uniprot/P01375 denotes TNF-α
T8357 18-21 http://www.uniprot.org/uniprot/P01375 denotes TNF
T8380 32-36 http://www.uniprot.org/uniprot/P05231 denotes IL-6

GO-MF

Id Subject Object Predicate Lexical cue
T8282 32-36 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6

simple1

Id Subject Object Predicate Lexical cue
T8331 42-46 Protein denotes MMP9
T8330 32-36 Protein denotes IL-6
T8329 25-30 Protein denotes IL-1β

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T9918 0-14 Gene_expression denotes overexpression
T9916 0-14 Positive_regulation denotes overexpression
T9890 42-46 Protein denotes MMP9
T9889 32-36 Protein denotes IL-6
T9888 25-30 Protein denotes IL-1β
R8146 T9888 T9918 themeOf IL-1β,overexpression
R8150 T9889 T9918 themeOf IL-6,overexpression
R8152 T9890 T9918 themeOf MMP9,overexpression
R8173 T9918 T9916 themeOf overexpression,overexpression
R8174 T9918 T9916 themeOf overexpression,overexpression
R8175 T9918 T9916 themeOf overexpression,overexpression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T8473 0-14 Positive_regulation denotes overexpression
T8446 42-46 Protein denotes MMP9
T8445 32-36 Protein denotes IL-6
T8444 25-30 Protein denotes IL-1β
R6868 T8444 T8473 themeOf IL-1β,overexpression
R6869 T8445 T8473 themeOf IL-6,overexpression
R6871 T8446 T8473 themeOf MMP9,overexpression

DLUT931

Id Subject Object Predicate Lexical cue
T8421 0-14 Gene_expression denotes overexpression
T8395 42-46 Protein denotes MMP9
T8394 32-36 Protein denotes IL-6
T8393 25-30 Protein denotes IL-1β
R6818 T8393 T8421 themeOf IL-1β,overexpression
R6819 T8394 T8421 themeOf IL-6,overexpression
R6820 T8395 T8421 themeOf MMP9,overexpression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T10073 0-69 Gene_expression denotes overexpression of TNF-α, IL-1β, IL-6, and MMP9 in cultured astrocytes
T10072 0-69 Gene_expression denotes overexpression of TNF-α, IL-1β, IL-6, and MMP9 in cultured astrocytes
T10071 0-69 Positive_regulation denotes overexpression of TNF-α, IL-1β, IL-6, and MMP9 in cultured astrocytes
T10009 32-36 Protein denotes IL-6
T10008 25-30 Protein denotes IL-1β
T9990 50-69 Entity denotes cultured astrocytes
T9974 18-23 Protein denotes TNF-α
T9965 42-46 Protein denotes MMP9
T10070 0-69 Positive_regulation denotes overexpression of TNF-α, IL-1β, IL-6, and MMP9 in cultured astrocytes
T10069 0-69 Positive_regulation denotes overexpression of TNF-α, IL-1β, IL-6, and MMP9 in cultured astrocytes
T10068 0-69 Positive_regulation denotes overexpression of TNF-α, IL-1β, IL-6, and MMP9 in cultured astrocytes
T10067 0-69 Gene_expression denotes overexpression of TNF-α, IL-1β, IL-6, and MMP9 in cultured astrocytes
T10066 0-69 Gene_expression denotes overexpression of TNF-α, IL-1β, IL-6, and MMP9 in cultured astrocytes
R8196 T9965 T10066 themeOf MMP9,"overexpression of TNF-α, IL-1β, IL-6, and MMP9 in cultured astrocytes"
R8197 T9965 T10071 themeOf MMP9,"overexpression of TNF-α, IL-1β, IL-6, and MMP9 in cultured astrocytes"
R8203 T9974 T10070 themeOf TNF-α,"overexpression of TNF-α, IL-1β, IL-6, and MMP9 in cultured astrocytes"
R8204 T9974 T10073 themeOf TNF-α,"overexpression of TNF-α, IL-1β, IL-6, and MMP9 in cultured astrocytes"
R8223 T10008 T10067 themeOf IL-1β,"overexpression of TNF-α, IL-1β, IL-6, and MMP9 in cultured astrocytes"
R8224 T10008 T10069 themeOf IL-1β,"overexpression of TNF-α, IL-1β, IL-6, and MMP9 in cultured astrocytes"
R8225 T10009 T10068 themeOf IL-6,"overexpression of TNF-α, IL-1β, IL-6, and MMP9 in cultured astrocytes"
R8226 T10009 T10072 themeOf IL-6,"overexpression of TNF-α, IL-1β, IL-6, and MMP9 in cultured astrocytes"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T8771 59-69 NNS denotes astrocytes
T8770 50-58 JJ denotes cultured
T8769 47-49 IN denotes in
T8768 42-46 NNP denotes MMP9
T8767 38-41 CC denotes and
T8766 36-37 , denotes ,
T8765 32-36 NNP denotes IL-6
T8764 30-31 , denotes ,
T8763 25-30 NNP denotes IL-1β
T8762 23-24 , denotes ,
T8761 18-23 NNP denotes TNF-α
T8760 15-17 IN denotes of
T8759 0-14 NN denotes overexpression
R7091 T8763 T8761 conj IL-1β,TNF-α
R7092 T8764 T8763 punct ",",IL-1β
R7093 T8765 T8763 conj IL-6,IL-1β
R7094 T8766 T8765 punct ",",IL-6
R7095 T8767 T8765 cc and,IL-6
R7096 T8768 T8765 conj MMP9,IL-6
R7098 T8770 T8771 amod cultured,astrocytes
R7099 T8771 T8769 pobj astrocytes,in
R7088 T8760 T8759 prep of,overexpression
R7089 T8761 T8760 pobj TNF-α,of
R7090 T8762 T8761 punct ",",TNF-α

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T8545 0-14 Positive_regulation denotes overexpression
T8544 0-14 Positive_regulation denotes overexpression
T8543 0-14 Positive_regulation denotes overexpression
T8542 0-14 Positive_regulation denotes overexpression
T8541 0-14 Gene_expression denotes overexpression
T8540 0-14 Gene_expression denotes overexpression
T8539 0-14 Gene_expression denotes overexpression
T8538 0-14 Gene_expression denotes overexpression
T8537 42-46 Protein denotes MMP9
T8536 32-36 Protein denotes IL-6
T8535 25-30 Protein denotes IL-1β
T8534 18-23 Protein denotes TNF-α
R6932 T8534 T8538 themeOf TNF-α,overexpression
R6933 T8535 T8539 themeOf IL-1β,overexpression
R6934 T8536 T8540 themeOf IL-6,overexpression
R6935 T8537 T8541 themeOf MMP9,overexpression
R6936 T8538 T8542 themeOf overexpression,overexpression
R6939 T8539 T8543 themeOf overexpression,overexpression
R6942 T8540 T8544 themeOf overexpression,overexpression
R6945 T8541 T8545 themeOf overexpression,overexpression

testone

Id Subject Object Predicate Lexical cue
T7082 0-14 Positive_regulation denotes overexpression
T7054 42-46 Protein denotes MMP9
T7053 32-36 Protein denotes IL-6
T7052 25-30 Protein denotes IL-1β
R5810 T7052 T7082 themeOf IL-1β,overexpression
R5811 T7053 T7082 themeOf IL-6,overexpression
R5812 T7054 T7082 themeOf MMP9,overexpression

test3

Id Subject Object Predicate Lexical cue
T7110 42-46 Protein denotes MMP9
T7109 32-36 Protein denotes IL-6
T7108 25-30 Protein denotes IL-1β
T7140 42-46 Protein denotes MMP9
T7139 32-36 Protein denotes IL-6
T7138 25-30 Protein denotes IL-1β
T7137 0-14 Positive_regulation denotes overexpression
R5834 T7138 T7137 themeOf IL-1β,overexpression
R5836 T7139 T7137 themeOf IL-6,overexpression
R5839 T7140 T7137 themeOf MMP9,overexpression