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PMC:3312845 / 648-916 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T336 259-267 NN denotes subunits
T335 253-258 NN denotes NF-κB
T334 249-252 CC denotes and
T333 243-248 NN denotes TNF-α
T332 239-242 IN denotes for
T331 231-238 NN denotes studies
T330 211-230 JJ denotes immunohistochemical
T329 207-210 CC denotes and
T328 198-206 NN denotes staining
T327 196-197 NN denotes B
T326 184-195 JJ denotes Fluoro-Jade
T325 174-183 VB denotes performed
T324 171-173 PRP denotes we
T323 169-170 -COMMA- denotes ,
T322 159-169 RB denotes Thereafter
T321 148-157 NN denotes induction
T320 145-147 NN denotes SE
T319 142-144 TO denotes to
T318 136-141 JJ denotes prior
T317 134-135 -RRB- denotes )
T316 126-134 NN denotes sTNFp55R
T315 125-126 -LRB- denotes (
T314 116-124 NN denotes receptor
T313 112-115 NN denotes p55
T312 108-111 NN denotes TNF
T311 100-107 JJ denotes soluble
T310 96-99 CC denotes and
T309 94-95 -COMMA- denotes ,
T308 87-94 NN denotes saline-
T307 82-86 IN denotes with
T306 74-81 VB denotes infused
T305 48-73 RB denotes intracerebroventricularly
T304 43-47 VB denotes were
T303 38-42 WDT denotes that
T302 33-37 NN denotes rats
T301 30-32 IN denotes in
T300 18-29 NN denotes pilocarpine
T299 15-17 IN denotes by
T298 7-14 VB denotes induced
T297 3-6 VB denotes was
T296 0-2 NN denotes SE
R127 T296 T297 arg1Of SE,was
R128 T296 T298 arg2Of SE,induced
R129 T298 T297 arg2Of induced,was
R130 T300 T301 arg1Of pilocarpine,in
R131 T300 T310 arg1Of pilocarpine,and
R132 T302 T301 arg2Of rats,in
R133 T302 T303 arg1Of rats,that
R134 T302 T304 arg1Of rats,were
R135 T302 T306 arg2Of rats,infused
R136 T306 T304 arg2Of infused,were
R137 T306 T305 arg1Of infused,intracerebroventricularly
R138 T306 T307 arg1Of infused,with
R139 T308 T307 arg2Of saline-,with
R140 T310 T298 arg1Of and,induced
R141 T310 T299 arg2Of and,by
R142 T310 T309 arg1Of and,","
R143 T314 T310 arg2Of receptor,and
R144 T314 T311 arg1Of receptor,soluble
R145 T314 T312 arg1Of receptor,TNF
R146 T314 T313 arg1Of receptor,p55
R147 T314 T315 arg1Of receptor,(
R148 T314 T318 arg1Of receptor,prior
R149 T316 T315 arg2Of sTNFp55R,(
R150 T317 T315 arg3Of ),(
R151 T318 T319 arg1Of prior,to
R152 T321 T319 arg2Of induction,to
R153 T321 T320 arg1Of induction,SE
R154 T324 T325 arg1Of we,performed
R155 T325 T322 arg1Of performed,Thereafter
R156 T325 T323 arg1Of performed,","
R157 T328 T326 arg1Of staining,Fluoro-Jade
R158 T328 T327 arg1Of staining,B
R159 T328 T329 arg1Of staining,and
R160 T329 T325 arg2Of and,performed
R161 T329 T332 arg1Of and,for
R162 T331 T329 arg2Of studies,and
R163 T331 T330 arg1Of studies,immunohistochemical
R164 T333 T334 arg1Of TNF-α,and
R165 T335 T334 arg2Of NF-κB,and
R166 T336 T332 arg2Of subunits,for
R167 T336 T333 arg1Of subunits,TNF-α
R168 T336 T335 arg1Of subunits,NF-κB

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T148 108-124 Protein denotes TNF p55 receptor
T149 127-134 Protein denotes TNFp55R
T150 243-248 Protein denotes TNF-α

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T478 112-115 http://www.uniprot.org/uniprot/P01589 denotes p55
T467 108-111 http://www.uniprot.org/uniprot/P01375 denotes TNF
T468 243-246 http://www.uniprot.org/uniprot/P01375 denotes TNF
T474 243-248 http://www.uniprot.org/uniprot/P01375 denotes TNF-α

sentences

Id Subject Object Predicate Lexical cue
T108 159-268 Sentence denotes Thereafter, we performed Fluoro-Jade B staining and immunohistochemical studies for TNF-α and NF-κB subunits.
T107 0-158 Sentence denotes SE was induced by pilocarpine in rats that were intracerebroventricularly infused with saline-, and soluble TNF p55 receptor (sTNFp55R) prior to SE induction.
T7 0-158 Sentence denotes SE was induced by pilocarpine in rats that were intracerebroventricularly infused with saline-, and soluble TNF p55 receptor (sTNFp55R) prior to SE induction.
T8 159-268 Sentence denotes Thereafter, we performed Fluoro-Jade B staining and immunohistochemical studies for TNF-α and NF-κB subunits.

simple1

Id Subject Object Predicate Lexical cue
T190 243-248 Protein denotes TNF-α
T189 127-134 Protein denotes TNFp55R
T188 108-124 Protein denotes TNF p55 receptor

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T912 108-124 Protein denotes TNF p55 receptor
T913 127-134 Protein denotes TNFp55R
T914 243-248 Protein denotes TNF-α

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T755 243-248 Protein denotes TNF-α
T754 127-134 Protein denotes TNFp55R
T753 108-124 Protein denotes TNF p55 receptor

DLUT931

Id Subject Object Predicate Lexical cue
T795 108-124 Protein denotes TNF p55 receptor
T796 127-134 Protein denotes TNFp55R
T797 243-248 Protein denotes TNF-α

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T989 0-95 Positive_regulation denotes SE was induced by pilocarpine in rats that were intracerebroventricularly infused with saline-,
T988 0-95 Gene_expression denotes SE was induced by pilocarpine in rats that were intracerebroventricularly infused with saline-,
T979 184-195 Entity denotes Fluoro-Jade
T977 191-195 Protein denotes Jade
T971 100-135 Protein denotes soluble TNF p55 receptor (sTNFp55R)
T966 15-29 Entity denotes by pilocarpine
T965 127-130 Protein denotes TNF
T933 0-2 Protein denotes SE
T942 126-134 Entity denotes sTNFp55R
T944 184-195 Entity denotes Fluoro-Jade
T950 145-147 Entity denotes SE
T954 243-248 Protein denotes TNF-α
T957 253-258 Protein denotes NF-κB
R601 T966 T989 causeOf by pilocarpine,"SE was induced by pilocarpine in rats that were intracerebroventricularly infused with saline-,"
R653 T933 T988 themeOf SE,"SE was induced by pilocarpine in rats that were intracerebroventricularly infused with saline-,"
R654 T933 T989 themeOf SE,"SE was induced by pilocarpine in rats that were intracerebroventricularly infused with saline-,"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T621 267-268 . denotes .
T620 259-267 NNS denotes subunits
T619 253-258 NNP denotes NF-κB
T618 249-252 CC denotes and
T617 243-248 NNP denotes TNF-α
T616 239-242 IN denotes for
T615 231-238 NNS denotes studies
T614 211-230 JJ denotes immunohistochemical
T613 207-210 CC denotes and
T612 198-206 VBG denotes staining
T611 196-197 NNP denotes B
T610 184-195 NNP denotes Fluoro-Jade
T609 174-183 VBD denotes performed
T608 171-173 PRP denotes we
T607 169-170 , denotes ,
T606 159-169 RB denotes Thereafter
T605 157-158 . denotes .
T604 148-157 NN denotes induction
T603 145-147 VB denotes SE
T602 142-144 TO denotes to
T601 136-141 RB denotes prior
T600 134-135 -RRB- denotes )
T599 126-134 JJ denotes sTNFp55R
T598 125-126 -LRB- denotes (
T597 116-124 NN denotes receptor
T596 112-115 NN denotes p55
T595 108-111 NNP denotes TNF
T594 100-107 JJ denotes soluble
T593 96-99 CC denotes and
T592 94-95 , denotes ,
T591 93-94 : denotes -
T590 87-93 NN denotes saline
T589 82-86 IN denotes with
T588 74-81 VBN denotes infused
T587 48-73 RB denotes intracerebroventricularly
T586 43-47 VBD denotes were
T585 38-42 WDT denotes that
T584 33-37 NNS denotes rats
T583 30-32 IN denotes in
T582 18-29 NN denotes pilocarpine
T581 15-17 IN denotes by
T580 7-14 VBN denotes induced
T579 3-6 VBD denotes was
T578 0-2 NNP denotes SE
R384 T578 T580 nsubjpass SE,induced
R385 T579 T580 auxpass was,induced
R386 T580 T580 ROOT induced,induced
R387 T581 T580 agent by,induced
R388 T582 T581 pobj pilocarpine,by
R389 T583 T580 prep in,induced
R390 T584 T583 pobj rats,in
R391 T585 T588 nsubjpass that,infused
R392 T586 T588 auxpass were,infused
R393 T587 T588 advmod intracerebroventricularly,infused
R394 T588 T584 relcl infused,rats
R395 T589 T588 prep with,infused
R396 T590 T589 pobj saline,with
R397 T591 T590 punct -,saline
R398 T592 T590 punct ",",saline
R399 T593 T590 cc and,saline
R400 T594 T590 conj soluble,saline
R401 T595 T597 nmod TNF,receptor
R402 T596 T597 compound p55,receptor
R403 T597 T590 conj receptor,saline
R404 T598 T597 punct (,receptor
R405 T599 T597 appos sTNFp55R,receptor
R406 T600 T597 punct ),receptor
R407 T601 T588 advmod prior,infused
R408 T602 T601 prep to,prior
R409 T603 T604 compound SE,induction
R410 T604 T602 pobj induction,to
R411 T605 T580 punct .,induced
R412 T606 T609 advmod Thereafter,performed
R413 T607 T609 punct ",",performed
R414 T608 T609 nsubj we,performed
R415 T609 T609 ROOT performed,performed
R416 T610 T611 compound Fluoro-Jade,B
R417 T611 T609 dobj B,performed
R418 T612 T609 prep staining,performed
R419 T613 T612 cc and,staining
R420 T614 T615 amod immunohistochemical,studies
R421 T615 T612 conj studies,staining
R422 T616 T615 prep for,studies
R423 T617 T620 nmod TNF-α,subunits
R424 T618 T617 cc and,TNF-α
R425 T619 T617 conj NF-κB,TNF-α
R426 T620 T616 pobj subunits,for
R427 T621 T609 punct .,performed

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T850 253-267 Protein denotes NF-κB subunits
T849 243-248 Protein denotes TNF-α
T847 108-124 Protein denotes TNF p55 receptor
T848 126-134 Protein denotes sTNFp55R

testone

Id Subject Object Predicate Lexical cue
T20 108-124 Protein denotes TNF p55 receptor
T21 127-134 Protein denotes TNFp55R
T22 243-248 Protein denotes TNF-α
T37 7-14 Positive_regulation denotes induced
T38 148-157 Positive_regulation denotes induction
T39 198-206 Gene_expression denotes staining
R3 T20 T38 themeOf TNF p55 receptor,induction

test3

Id Subject Object Predicate Lexical cue
T74 243-248 Protein denotes TNF-α
T73 148-157 Positive_regulation denotes induction
T72 126-134 Protein denotes sTNFp55R
T71 108-124 Protein denotes TNF p55 receptor
T52 108-124 Protein denotes TNF p55 receptor
T53 127-134 Protein denotes TNFp55R
T54 243-248 Protein denotes TNF-α
T70 7-14 Positive_regulation denotes induced
R19 T71 T70 causeOf TNF p55 receptor,induced
R20 T71 T73 themeOf TNF p55 receptor,induction
R21 T72 T71 equivalentTo sTNFp55R,TNF p55 receptor