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PMC:3312845 / 33780-34035 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T12820 250-254 NN denotes loss
T12819 230-249 JJ denotes neuronal-astroglial
T12818 226-229 CC denotes and
T12817 213-225 NN denotes infiltration
T12816 202-212 NN denotes neutrophil
T12815 199-201 TO denotes to
T12814 190-198 JJ denotes relevant
T12813 187-189 VB denotes is
T12812 181-186 WDT denotes which
T12811 179-180 -COMMA- denotes ,
T12810 174-179 NN denotes edema
T12809 164-173 JJ denotes vasogenic
T12808 153-163 JJ denotes SE-induced
T12807 150-152 IN denotes in
T12806 141-149 VB denotes involved
T12805 138-140 VB denotes be
T12804 134-137 MD denotes may
T12803 118-133 NN denotes phosphorylation
T12802 112-117 NN denotes NF-κB
T12801 108-111 CD denotes 435
T12800 100-107 NN denotes p65-Thr
T12799 91-99 VB denotes mediated
T12798 85-90 NN denotes TNF-α
T12797 81-84 IN denotes via
T12796 72-80 NN denotes function
T12795 67-71 NN denotes cell
T12794 55-66 JJ denotes endothelial
T12793 52-54 IN denotes of
T12792 40-51 NN denotes impairments
T12791 35-39 IN denotes that
T12790 28-34 VB denotes reveal
T12789 19-27 NN denotes findings
T12788 15-18 PRP-DOLLAR- denotes our
T12787 13-14 -COMMA- denotes ,
T12786 3-13 NN denotes conclusion
T12785 0-2 IN denotes In
R10042 T12786 T12785 arg2Of conclusion,In
R10043 T12789 T12788 arg1Of findings,our
R10044 T12789 T12790 arg1Of findings,reveal
R10045 T12790 T12785 arg1Of reveal,In
R10046 T12790 T12787 arg1Of reveal,","
R10047 T12792 T12793 arg1Of impairments,of
R10048 T12792 T12797 arg1Of impairments,via
R10049 T12792 T12804 arg1Of impairments,may
R10050 T12792 T12805 arg1Of impairments,be
R10051 T12792 T12806 arg2Of impairments,involved
R10052 T12796 T12793 arg2Of function,of
R10053 T12796 T12794 arg1Of function,endothelial
R10054 T12796 T12795 arg1Of function,cell
R10055 T12803 T12797 arg2Of phosphorylation,via
R10056 T12803 T12798 arg1Of phosphorylation,TNF-α
R10057 T12803 T12799 arg2Of phosphorylation,mediated
R10058 T12803 T12800 arg1Of phosphorylation,p65-Thr
R10059 T12803 T12801 arg1Of phosphorylation,435
R10060 T12803 T12802 arg1Of phosphorylation,NF-κB
R10061 T12806 T12790 arg2Of involved,reveal
R10062 T12806 T12791 arg1Of involved,that
R10063 T12806 T12804 arg2Of involved,may
R10064 T12806 T12805 arg2Of involved,be
R10065 T12806 T12807 arg1Of involved,in
R10066 T12810 T12807 arg2Of edema,in
R10067 T12810 T12808 arg1Of edema,SE-induced
R10068 T12810 T12809 arg1Of edema,vasogenic
R10069 T12810 T12811 arg1Of edema,","
R10070 T12810 T12812 arg1Of edema,which
R10071 T12810 T12813 arg1Of edema,is
R10072 T12810 T12814 arg1Of edema,relevant
R10073 T12814 T12813 arg2Of relevant,is
R10074 T12814 T12815 arg1Of relevant,to
R10075 T12817 T12816 arg1Of infiltration,neutrophil
R10076 T12817 T12818 arg1Of infiltration,and
R10077 T12818 T12815 arg2Of and,to
R10078 T12820 T12818 arg2Of loss,and
R10079 T12820 T12819 arg1Of loss,neuronal-astroglial

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T11712 100-103 Protein denotes p65
T11711 85-90 Protein denotes TNF-α

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T12884 100-103 http://www.uniprot.org/uniprot/P21579 denotes p65
T12865 100-103 http://www.uniprot.org/uniprot/Q04206 denotes p65
T12846 85-90 http://www.uniprot.org/uniprot/P01375 denotes TNF-α

GO-BP

Id Subject Object Predicate Lexical cue
T11726 118-133 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-CC

Id Subject Object Predicate Lexical cue
T11756 67-71 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T11660 0-255 Sentence denotes In conclusion, our findings reveal that impairments of endothelial cell function via TNF-α mediated p65-Thr 435 NF-κB phosphorylation may be involved in SE-induced vasogenic edema, which is relevant to neutrophil infiltration and neuronal-astroglial loss.
T245 0-255 Sentence denotes In conclusion, our findings reveal that impairments of endothelial cell function via TNF-α mediated p65-Thr 435 NF-κB phosphorylation may be involved in SE-induced vasogenic edema, which is relevant to neutrophil infiltration and neuronal-astroglial loss.

simple1

Id Subject Object Predicate Lexical cue
T11965 100-103 Protein denotes p65
T11964 85-90 Protein denotes TNF-α

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T14257 118-133 Phosphorylation denotes phosphorylation
T14234 100-103 Protein denotes p65
T14233 85-90 Protein denotes TNF-α
R11188 T14234 T14257 themeOf p65,phosphorylation

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T13860 118-133 Phosphorylation denotes phosphorylation
T13859 91-99 Positive_regulation denotes mediated
T13837 100-103 Protein denotes p65
T13836 85-90 Protein denotes TNF-α
R11028 T13837 T13860 themeOf p65,phosphorylation
R11045 T13860 T13859 themeOf phosphorylation,mediated

DLUT931

Id Subject Object Predicate Lexical cue
T13934 91-99 Positive_regulation denotes mediated
T13933 118-133 Phosphorylation denotes phosphorylation
T13912 100-103 Protein denotes p65
T13911 85-90 Protein denotes TNF-α
R11025 T13911 T13934 causeOf TNF-α,mediated
R11026 T13912 T13933 themeOf p65,phosphorylation
R11041 T13933 T13934 themeOf phosphorylation,mediated

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T14320 85-99 Protein denotes TNF-α mediated
T14308 55-71 Entity denotes endothelial cell
T14305 112-117 Protein denotes NF-κB
T14277 202-212 Entity denotes neutrophil
T14265 85-133 Protein denotes TNF-α mediated p65-Thr 435 NF-κB phosphorylation
T14259 85-133 Entity denotes TNF-α mediated p65-Thr 435 NF-κB phosphorylation
T14414 85-99 Regulation denotes TNF-α mediated
T14396 85-133 Phosphorylation denotes TNF-α mediated p65-Thr 435 NF-κB phosphorylation
T14385 153-155 Entity denotes SE
R11186 T14259 T14305 partOf TNF-α mediated p65-Thr 435 NF-κB phosphorylation,NF-κB
R11187 T14259 T14396 siteOf TNF-α mediated p65-Thr 435 NF-κB phosphorylation,TNF-α mediated p65-Thr 435 NF-κB phosphorylation
R11204 T14305 T14396 themeOf NF-κB,TNF-α mediated p65-Thr 435 NF-κB phosphorylation
R11208 T14320 T14396 causeOf TNF-α mediated,TNF-α mediated p65-Thr 435 NF-κB phosphorylation
R11209 T14320 T14414 themeOf TNF-α mediated,TNF-α mediated

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T13785 254-255 . denotes .
T13784 250-254 NN denotes loss
T13783 230-249 JJ denotes neuronal-astroglial
T13782 226-229 CC denotes and
T13781 213-225 NN denotes infiltration
T13780 202-212 NN denotes neutrophil
T13779 199-201 TO denotes to
T13778 190-198 JJ denotes relevant
T13777 187-189 VBZ denotes is
T13776 181-186 WDT denotes which
T13775 179-180 , denotes ,
T13774 174-179 NN denotes edema
T13773 164-173 JJ denotes vasogenic
T13772 153-163 JJ denotes SE-induced
T13771 150-152 IN denotes in
T13770 141-149 VBN denotes involved
T13769 138-140 VB denotes be
T13768 134-137 MD denotes may
T13767 118-133 NN denotes phosphorylation
T13766 112-117 JJ denotes NF-κB
T13765 108-111 CD denotes 435
T13764 100-107 JJ denotes p65-Thr
T13763 91-99 VBD denotes mediated
T13762 85-90 NNP denotes TNF-α
T13761 81-84 IN denotes via
T13760 72-80 NN denotes function
T13759 67-71 NN denotes cell
T13758 55-66 JJ denotes endothelial
T13757 52-54 IN denotes of
T13756 40-51 NNS denotes impairments
T13755 35-39 IN denotes that
T13754 28-34 VBP denotes reveal
T13753 19-27 NNS denotes findings
T13752 15-18 PRP$ denotes our
T13751 13-14 , denotes ,
T13750 3-13 NN denotes conclusion
T13749 0-2 IN denotes In
R10932 T13764 T13767 amod p65-Thr,phosphorylation
R10934 T13765 T13767 nummod 435,phosphorylation
R10936 T13766 T13767 amod NF-κB,phosphorylation
R10937 T13767 T13770 nsubjpass phosphorylation,involved
R10939 T13768 T13770 aux may,involved
R10940 T13769 T13770 auxpass be,involved
R10942 T13770 T13754 ccomp involved,reveal
R10943 T13771 T13770 prep in,involved
R10944 T13772 T13774 amod SE-induced,edema
R10945 T13749 T13754 prep In,reveal
R10946 T13773 T13774 amod vasogenic,edema
R10947 T13774 T13771 pobj edema,in
R10948 T13775 T13774 punct ",",edema
R10949 T13750 T13749 pobj conclusion,In
R10950 T13776 T13777 nsubj which,is
R10951 T13777 T13774 relcl is,edema
R10952 T13751 T13754 punct ",",reveal
R10953 T13778 T13777 acomp relevant,is
R10954 T13779 T13780 aux to,neutrophil
R10955 T13752 T13753 poss our,findings
R10956 T13780 T13781 amod neutrophil,infiltration
R10957 T13781 T13777 attr infiltration,is
R10958 T13782 T13781 cc and,infiltration
R10959 T13783 T13784 amod neuronal-astroglial,loss
R10960 T13784 T13781 conj loss,infiltration
R10961 T13785 T13754 punct .,reveal
R10962 T13753 T13754 nsubj findings,reveal
R10963 T13754 T13754 ROOT reveal,reveal
R10964 T13755 T13763 mark that,mediated
R10965 T13756 T13763 nsubj impairments,mediated
R10966 T13757 T13756 prep of,impairments
R10967 T13758 T13760 amod endothelial,function
R10968 T13759 T13760 compound cell,function
R10969 T13760 T13757 pobj function,of
R10970 T13761 T13756 prep via,impairments
R10971 T13762 T13763 nsubj TNF-α,mediated
R10972 T13763 T13770 advcl mediated,involved

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T14023 91-99 Positive_regulation denotes mediated
T14022 91-99 Positive_regulation denotes mediated
T14021 118-133 Phosphorylation denotes phosphorylation
T14020 118-133 Phosphorylation denotes phosphorylation
T14019 115-117 Protein denotes κB
T14018 100-114 Protein denotes p65-Thr 435 NF
T14017 85-90 Protein denotes TNF-α
R11107 T14018 T14020 themeOf p65-Thr 435 NF,phosphorylation
R11110 T14019 T14021 themeOf κB,phosphorylation
R11111 T14020 T14022 themeOf phosphorylation,mediated
R11112 T14021 T14023 themeOf phosphorylation,mediated
R11113 T14022 T14017 Cause mediated,TNF-α
R11114 T14023 T14017 Cause mediated,TNF-α

testone

Id Subject Object Predicate Lexical cue
T11467 118-133 Phosphorylation denotes phosphorylation
T11466 91-99 Positive_regulation denotes mediated
T11421 100-103 Protein denotes p65
T11420 85-90 Protein denotes TNF-α
R9061 T11420 T11466 causeOf TNF-α,mediated
R9062 T11421 T11467 themeOf p65,phosphorylation
R9092 T11467 T11466 themeOf phosphorylation,mediated

test3

Id Subject Object Predicate Lexical cue
T11610 118-133 Phosphorylation denotes phosphorylation
T11609 100-103 Protein denotes p65
T11608 91-99 Positive_regulation denotes mediated
T11607 85-90 Protein denotes TNF-α
T11519 100-103 Protein denotes p65
T11518 85-90 Protein denotes TNF-α
R9143 T11607 T11608 causeOf TNF-α,mediated
R9144 T11609 T11610 themeOf p65,phosphorylation
R9145 T11610 T11608 themeOf phosphorylation,mediated