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PMC:3312845 / 31164-31270 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T12396 95-97 DT denotes an
T12395 90-94 VB denotes play
T12394 86-89 MD denotes may
T12393 80-85 NN denotes cells
T12392 68-79 JJ denotes endothelial
T12391 65-67 IN denotes in
T12390 49-64 NN denotes phosphorylation
T12389 38-48 NN denotes p65-Thr435
T12388 23-37 JJ denotes TNF-α-mediated
T12387 18-22 IN denotes that
T12386 9-17 VB denotes indicate
T12385 0-8 NN denotes findings
R9633 T12385 T12386 arg1Of findings,indicate
R9636 T12390 T12388 arg1Of phosphorylation,TNF-α-mediated
R9637 T12390 T12389 arg1Of phosphorylation,p65-Thr435
R9638 T12390 T12391 arg1Of phosphorylation,in
R9639 T12390 T12394 arg1Of phosphorylation,may
R9640 T12390 T12395 arg1Of phosphorylation,play
R9641 T12393 T12391 arg2Of cells,in
R9642 T12393 T12392 arg1Of cells,endothelial
R9643 T12395 T12386 arg2Of play,indicate
R9644 T12395 T12387 arg1Of play,that
R9645 T12395 T12394 arg2Of play,may

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T11679 38-41 Protein denotes p65
T11678 23-28 Protein denotes TNF-α

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T12870 38-41 http://www.uniprot.org/uniprot/P21579 denotes p65
T12851 38-41 http://www.uniprot.org/uniprot/Q04206 denotes p65
T12841 23-28 http://www.uniprot.org/uniprot/P01375 denotes TNF-α
T12829 23-26 http://www.uniprot.org/uniprot/P01375 denotes TNF

GO-BP

Id Subject Object Predicate Lexical cue
T11722 49-64 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-CC

Id Subject Object Predicate Lexical cue
T11753 80-85 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

simple1

Id Subject Object Predicate Lexical cue
T11932 38-41 Protein denotes p65
T11931 23-28 Protein denotes TNF-α

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T14242 29-37 Positive_regulation denotes mediated
T14241 49-64 Phosphorylation denotes phosphorylation
T14201 38-41 Protein denotes p65
T14200 23-28 Protein denotes TNF-α
R11158 T14201 T14242 themeOf p65,mediated
R11159 T14201 T14241 themeOf p65,phosphorylation

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T13843 29-37 Positive_regulation denotes mediated
T13842 49-64 Phosphorylation denotes phosphorylation
T13804 38-41 Protein denotes p65
T13803 23-28 Protein denotes TNF-α
R10977 T13803 T13843 causeOf TNF-α,mediated
R10978 T13804 T13842 themeOf p65,phosphorylation
R11030 T13842 T13843 themeOf phosphorylation,mediated

DLUT931

Id Subject Object Predicate Lexical cue
T13919 29-37 Positive_regulation denotes mediated
T13918 49-64 Phosphorylation denotes phosphorylation
T13879 38-41 Protein denotes p65
T13878 23-28 Protein denotes TNF-α
R10996 T13878 T13919 causeOf TNF-α,mediated
R10997 T13879 T13918 themeOf p65,phosphorylation
R11029 T13918 T13919 themeOf phosphorylation,mediated

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T14291 38-48 Protein denotes p65-Thr435
T14268 23-37 Protein denotes TNF-α-mediated
T14406 23-85 Regulation denotes TNF-α-mediated p65-Thr435 phosphorylation in endothelial cells
T14388 68-85 Entity denotes endothelial cells
T14347 38-48 Entity denotes p65-Thr435
R11189 T14268 T14406 causeOf TNF-α-mediated,TNF-α-mediated p65-Thr435 phosphorylation in endothelial cells

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T13342 95-97 DT denotes an
T13341 90-94 VB denotes play
T13340 86-89 MD denotes may
T13339 80-85 NNS denotes cells
T13338 68-79 JJ denotes endothelial
T13337 65-67 IN denotes in
T13336 49-64 NN denotes phosphorylation
T13335 38-48 NN denotes p65-Thr435
T13334 23-37 JJ denotes TNF-α-mediated
T13333 18-22 IN denotes that
T13332 9-17 VBP denotes indicate
T13331 0-8 NNS denotes findings
R10518 T13331 T13332 nsubj findings,indicate
R10519 T13332 T13332 ROOT indicate,indicate
R10520 T13333 T13341 mark that,play
R10521 T13334 T13336 amod TNF-α-mediated,phosphorylation
R10522 T13335 T13336 compound p65-Thr435,phosphorylation
R10523 T13336 T13341 nsubj phosphorylation,play
R10524 T13337 T13336 prep in,phosphorylation
R10525 T13338 T13339 amod endothelial,cells
R10526 T13339 T13337 pobj cells,in
R10527 T13340 T13341 aux may,play
R10528 T13341 T13332 ccomp play,indicate

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T13972 29-37 Positive_regulation denotes mediated
T13971 29-37 Positive_regulation denotes mediated
T13970 49-64 Phosphorylation denotes phosphorylation
T13969 49-64 Phosphorylation denotes phosphorylation
T13966 42-48 Protein denotes Thr435
T13965 38-41 Protein denotes p65
T13964 23-28 Protein denotes TNF-α
R11054 T13965 T13969 themeOf p65,phosphorylation
R11055 T13966 T13970 themeOf Thr435,phosphorylation
R11057 T13969 T13971 themeOf phosphorylation,mediated
R11060 T13970 T13972 themeOf phosphorylation,mediated
R11061 T13971 T13964 Cause mediated,TNF-α
R11062 T13972 T13964 Cause mediated,TNF-α

testone

Id Subject Object Predicate Lexical cue
T11388 38-41 Protein denotes p65
T11387 23-28 Protein denotes TNF-α
T11437 49-64 Phosphorylation denotes phosphorylation
T11436 29-37 Positive_regulation denotes mediated
R9042 T11387 T11436 causeOf TNF-α,mediated
R9043 T11388 T11437 themeOf p65,phosphorylation
R9066 T11437 T11436 themeOf phosphorylation,mediated

test3

Id Subject Object Predicate Lexical cue
T11548 49-64 Phosphorylation denotes phosphorylation
T11547 38-41 Protein denotes p65
T11546 29-37 Positive_regulation denotes mediated
T11545 23-28 Protein denotes TNF-α
T11486 38-41 Protein denotes p65
T11485 23-28 Protein denotes TNF-α
R9097 T11545 T11546 causeOf TNF-α,mediated
R9098 T11547 T11548 themeOf p65,phosphorylation
R9099 T11548 T11546 themeOf phosphorylation,mediated