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PMC:3312845 / 235-638 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T282 316-321 NN denotes edema
T294 400-402 NN denotes SE
T293 380-399 JJ denotes pilocarpine-induced
T292 377-379 IN denotes by
T291 368-376 VB denotes provoked
T290 361-367 NN denotes models
T289 352-360 NN denotes epilepsy
T288 348-351 NN denotes rat
T287 345-347 IN denotes in
T286 338-344 NN denotes events
T285 330-337 JJ denotes related
T284 326-329 PRP-DOLLAR- denotes its
T283 322-325 CC denotes and
T281 306-315 JJ denotes vasogenic
T280 299-305 IN denotes during
T279 288-298 NN denotes disruption
T278 286-287 -RRB- denotes )
T277 283-286 NN denotes BBB
T276 282-283 -LRB- denotes (
T275 274-281 NN denotes barrier
T274 262-273 NN denotes blood-brain
T273 259-261 IN denotes in
T272 256-258 NN denotes -α
T271 255-256 -RRB- denotes )
T270 252-255 NN denotes TNF
T269 251-252 -LRB- denotes (
T268 244-250 NN denotes factor
T267 235-243 NN denotes necrosis
T266 229-234 NN denotes tumor
T265 226-228 IN denotes of
T264 220-225 NN denotes roles
T263 216-219 DT denotes the
T262 203-215 VB denotes investigated
T261 200-202 PRP denotes we
T260 198-199 -COMMA- denotes ,
T259 193-198 NN denotes edema
T258 183-192 JJ denotes vasogenic
T257 172-182 JJ denotes SE-induced
T256 169-171 IN denotes of
T255 159-168 NN denotes mechanism
T254 155-158 DT denotes the
T253 145-154 VB denotes elucidate
T252 142-144 TO denotes To
T251 133-140 NN denotes damages
T250 122-132 JJ denotes astroglial
T249 118-121 CC denotes and
T248 109-117 JJ denotes neuronal
T247 106-108 IN denotes by
T246 94-105 VB denotes accompanied
T245 92-93 -RRB- denotes )
T244 90-92 NN denotes PC
T243 89-90 -LRB- denotes (
T242 82-88 NN denotes cortex
T241 73-81 NN denotes piriform
T240 69-72 DT denotes the
T239 66-68 IN denotes in
T238 60-65 NN denotes edema
T237 50-59 JJ denotes vasogenic
T236 43-49 JJ denotes severe
T235 35-42 VB denotes induces
T234 33-34 -RRB- denotes )
T233 31-33 NN denotes SE
T232 30-31 -LRB- denotes (
T231 18-29 NN denotes epilepticus
T230 11-17 NN denotes Status
T229 0-10 NN denotes Background
R62 T231 T230 arg1Of epilepticus,Status
R63 T231 T232 arg1Of epilepticus,(
R64 T231 T235 arg1Of epilepticus,induces
R65 T233 T232 arg2Of SE,(
R66 T234 T232 arg3Of ),(
R67 T235 T239 arg1Of induces,in
R68 T238 T235 arg2Of edema,induces
R69 T238 T236 arg1Of edema,severe
R70 T238 T237 arg1Of edema,vasogenic
R71 T242 T239 arg2Of cortex,in
R72 T242 T240 arg1Of cortex,the
R73 T242 T241 arg1Of cortex,piriform
R74 T242 T243 arg1Of cortex,(
R75 T242 T246 arg2Of cortex,accompanied
R76 T244 T243 arg2Of PC,(
R77 T245 T243 arg3Of ),(
R78 T248 T249 arg1Of neuronal,and
R79 T250 T249 arg2Of astroglial,and
R80 T251 T246 arg1Of damages,accompanied
R81 T251 T247 arg2Of damages,by
R82 T251 T248 arg1Of damages,neuronal
R83 T251 T250 arg1Of damages,astroglial
R84 T253 T252 arg1Of elucidate,To
R85 T255 T253 arg2Of mechanism,elucidate
R86 T255 T254 arg1Of mechanism,the
R87 T255 T256 arg1Of mechanism,of
R88 T259 T256 arg2Of edema,of
R89 T259 T257 arg1Of edema,SE-induced
R90 T259 T258 arg1Of edema,vasogenic
R91 T261 T253 arg1Of we,elucidate
R92 T261 T262 arg1Of we,investigated
R93 T262 T252 modOf investigated,To
R94 T262 T260 arg1Of investigated,","
R95 T262 T280 arg1Of investigated,during
R96 T262 T287 arg1Of investigated,in
R97 T264 T262 arg2Of roles,investigated
R98 T264 T263 arg1Of roles,the
R99 T264 T265 arg1Of roles,of
R100 T268 T266 arg1Of factor,tumor
R101 T268 T267 arg1Of factor,necrosis
R102 T268 T269 arg1Of factor,(
R103 T270 T269 arg2Of TNF,(
R104 T271 T269 arg3Of ),(
R105 T272 T265 arg2Of -α,of
R106 T272 T268 arg1Of -α,factor
R107 T272 T273 arg1Of -α,in
R108 T275 T274 arg1Of barrier,blood-brain
R109 T275 T276 arg1Of barrier,(
R110 T277 T276 arg2Of BBB,(
R111 T278 T276 arg3Of ),(
R112 T279 T273 arg2Of disruption,in
R113 T279 T275 arg1Of disruption,barrier
R114 T282 T281 arg1Of edema,vasogenic
R115 T282 T283 arg1Of edema,and
R116 T283 T280 arg2Of and,during
R117 T286 T283 arg2Of events,and
R118 T286 T284 arg1Of events,its
R119 T286 T285 arg1Of events,related
R120 T290 T287 arg2Of models,in
R121 T290 T288 arg1Of models,rat
R122 T290 T289 arg1Of models,epilepsy
R123 T290 T291 arg2Of models,provoked
R124 T294 T291 arg1Of SE,provoked
R125 T294 T292 arg2Of SE,by
R126 T294 T293 arg1Of SE,pilocarpine-induced

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T147 229-258 Protein denotes tumor necrosis factor (TNF)-α

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T466 252-255 http://www.uniprot.org/uniprot/P01375 denotes TNF
T473 252-258 http://www.uniprot.org/uniprot/P01375 denotes TNF)-α

UBERON-AE

Id Subject Object Predicate Lexical cue
T95 73-88 http://purl.obolibrary.org/obo/UBERON_0004725 denotes piriform cortex
T97 82-88 http://purl.obolibrary.org/obo/UBERON_0001851 denotes cortex
T98 262-267 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T99 262-281 http://purl.obolibrary.org/obo/UBERON_0000120 denotes blood-brain barrier
T100 268-273 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain

GO-BP

Id Subject Object Predicate Lexical cue
T166 235-243 http://purl.obolibrary.org/obo/GO_0019835 denotes necrosis
T168 235-243 http://purl.obolibrary.org/obo/GO_0070265 denotes necrosis
T162 235-243 http://purl.obolibrary.org/obo/GO_0001906 denotes necrosis
T164 235-243 http://purl.obolibrary.org/obo/GO_0008219 denotes necrosis

sentences

Id Subject Object Predicate Lexical cue
T105 142-403 Sentence denotes To elucidate the mechanism of SE-induced vasogenic edema, we investigated the roles of tumor necrosis factor (TNF)-α in blood-brain barrier (BBB) disruption during vasogenic edema and its related events in rat epilepsy models provoked by pilocarpine-induced SE.
T104 11-141 Sentence denotes Status epilepticus (SE) induces severe vasogenic edema in the piriform cortex (PC) accompanied by neuronal and astroglial damages.
T103 0-10 Sentence denotes Background
T3 0-10 Sentence denotes Background
T4 11-141 Sentence denotes Status epilepticus (SE) induces severe vasogenic edema in the piriform cortex (PC) accompanied by neuronal and astroglial damages.
T5 142-403 Sentence denotes To elucidate the mechanism of SE-induced vasogenic edema, we investigated the roles of tumor necrosis factor (TNF)-α in blood-brain barrier (BBB) disruption during vasogenic edema and its related events in rat epilepsy models provoked by pilocarpine-induced SE.

ICD10

Id Subject Object Predicate Lexical cue
T175 11-29 http://purl.bioontology.org/ontology/ICD10/G41.9 denotes Status epilepticus
T177 11-29 http://purl.bioontology.org/ontology/ICD10/G41 denotes Status epilepticus
T178 352-360 http://purl.bioontology.org/ontology/ICD10/G40.9 denotes epilepsy
T179 352-360 http://purl.bioontology.org/ontology/ICD10/G40 denotes epilepsy

simple1

Id Subject Object Predicate Lexical cue
T187 229-258 Protein denotes tumor necrosis factor (TNF)-α

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T911 229-258 Protein denotes tumor necrosis factor (TNF)-α

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T752 229-258 Protein denotes tumor necrosis factor (TNF)-α

DLUT931

Id Subject Object Predicate Lexical cue
T794 229-258 Protein denotes tumor necrosis factor (TNF)-α

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T974 172-182 Entity denotes SE-induced
T970 90-92 Protein denotes PC
T967 31-33 Entity denotes SE
T934 377-402 Entity denotes by pilocarpine-induced SE
T958 380-399 Entity denotes pilocarpine-induced
T959 226-258 Protein denotes of tumor necrosis factor (TNF)-α

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T575 400-402 NNP denotes SE
T574 380-399 JJ denotes pilocarpine-induced
T573 377-379 IN denotes by
T572 368-376 VBN denotes provoked
T571 361-367 NNS denotes models
T570 352-360 NN denotes epilepsy
T569 348-351 NN denotes rat
T568 345-347 IN denotes in
T567 338-344 NNS denotes events
T566 330-337 JJ denotes related
T565 326-329 PRP$ denotes its
T564 322-325 CC denotes and
T563 316-321 NN denotes edema
T562 306-315 JJ denotes vasogenic
T561 299-305 IN denotes during
T560 288-298 NN denotes disruption
T559 286-287 -RRB- denotes )
T558 283-286 NNP denotes BBB
T557 282-283 -LRB- denotes (
T556 274-281 NN denotes barrier
T555 262-273 JJ denotes blood-brain
T554 259-261 IN denotes in
T553 257-258 NN denotes α
T552 256-257 : denotes -
T551 255-256 -RRB- denotes )
T550 252-255 NNP denotes TNF
T549 251-252 -LRB- denotes (
T548 244-250 NN denotes factor
T547 235-243 NN denotes necrosis
T546 229-234 NN denotes tumor
T545 226-228 IN denotes of
T544 220-225 NNS denotes roles
T543 216-219 DT denotes the
T542 203-215 VBD denotes investigated
T541 200-202 PRP denotes we
T540 198-199 , denotes ,
T539 193-198 NN denotes edema
T538 183-192 JJ denotes vasogenic
T537 172-182 JJ denotes SE-induced
T536 169-171 IN denotes of
T535 159-168 NN denotes mechanism
T534 155-158 DT denotes the
T533 145-154 VB denotes elucidate
T532 142-144 TO denotes To
T531 140-141 . denotes .
T530 133-140 NNS denotes damages
T529 122-132 JJ denotes astroglial
T528 118-121 CC denotes and
T527 109-117 JJ denotes neuronal
T526 106-108 IN denotes by
T525 94-105 VBN denotes accompanied
T524 92-93 -RRB- denotes )
T523 90-92 NN denotes PC
T522 89-90 -LRB- denotes (
T521 82-88 NN denotes cortex
T520 73-81 NN denotes piriform
T519 69-72 DT denotes the
T518 66-68 IN denotes in
T517 60-65 NN denotes edema
T516 50-59 JJ denotes vasogenic
T515 43-49 JJ denotes severe
T514 35-42 VBZ denotes induces
T513 33-34 -RRB- denotes )
T512 31-33 FW denotes SE
T511 30-31 -LRB- denotes (
T510 18-29 NN denotes epilepticus
T509 11-17 NNP denotes Status
T508 0-10 NNP denotes Background
T576 402-403 . denotes .
R314 T508 T509 compound Background,Status
R315 T509 T510 compound Status,epilepticus
R317 T511 T512 punct (,SE
R318 T512 T510 appos SE,epilepticus
R319 T513 T510 punct ),epilepticus
R321 T515 T517 amod severe,edema
R322 T516 T517 amod vasogenic,edema
R323 T517 T514 dobj edema,induces
R324 T518 T514 prep in,induces
R325 T519 T521 det the,cortex
R326 T520 T521 compound piriform,cortex
R327 T521 T518 pobj cortex,in
R328 T522 T521 punct (,cortex
R329 T523 T521 appos PC,cortex
R330 T524 T521 punct ),cortex
R331 T525 T514 advcl accompanied,induces
R332 T526 T525 agent by,accompanied
R333 T527 T530 amod neuronal,damages
R334 T528 T527 cc and,neuronal
R335 T529 T527 conj astroglial,neuronal
R336 T530 T526 pobj damages,by
R338 T532 T533 aux To,elucidate
R339 T533 T542 advcl elucidate,investigated
R340 T534 T535 det the,mechanism
R341 T535 T533 dobj mechanism,elucidate
R342 T536 T535 prep of,mechanism
R343 T537 T539 amod SE-induced,edema
R344 T538 T539 amod vasogenic,edema
R345 T539 T536 pobj edema,of
R346 T540 T542 punct ",",investigated
R347 T541 T542 nsubj we,investigated
R348 T542 T542 ROOT investigated,investigated
R349 T543 T544 det the,roles
R350 T544 T542 dobj roles,investigated
R351 T545 T544 prep of,roles
R352 T546 T547 compound tumor,necrosis
R353 T547 T548 compound necrosis,factor
R354 T548 T545 pobj factor,of
R355 T549 T550 punct (,TNF
R356 T550 T548 appos TNF,factor
R357 T551 T550 punct ),TNF
R358 T552 T553 punct -,α
R359 T553 T544 conj α,roles
R360 T554 T553 prep in,α
R361 T555 T556 amod blood-brain,barrier
R362 T556 T554 pobj barrier,in
R363 T557 T558 punct (,BBB
R364 T558 T553 appos BBB,α
R365 T559 T553 punct ),α
R366 T560 T542 npadvmod disruption,investigated
R367 T561 T560 prep during,disruption
R368 T562 T563 amod vasogenic,edema
R369 T563 T561 pobj edema,during
R370 T564 T563 cc and,edema
R371 T565 T567 poss its,events
R372 T566 T567 amod related,events
R373 T567 T563 conj events,edema
R374 T568 T567 prep in,events
R375 T569 T571 compound rat,models
R376 T570 T571 compound epilepsy,models
R377 T571 T568 pobj models,in
R378 T572 T571 acl provoked,models
R379 T573 T572 agent by,provoked
R380 T574 T575 amod pilocarpine-induced,SE
R381 T575 T573 pobj SE,by
R382 T576 T542 punct .,investigated

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T846 229-258 Protein denotes tumor necrosis factor (TNF)-α

testone

Id Subject Object Predicate Lexical cue
T19 229-258 Protein denotes tumor necrosis factor (TNF)-α
T35 288-298 Negative_regulation denotes disruption
T36 392-399 Positive_regulation denotes induced

test3

Id Subject Object Predicate Lexical cue
T51 229-258 Protein denotes tumor necrosis factor (TNF)-α
T69 229-258 Protein denotes tumor necrosis factor (TNF)-α