PMC:3312845 / 21771-21935
Annnotations
pmc-enju-pas
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bionlp-st-ge-2016-test-proteins
{"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T8744","span":{"begin":65,"end":68},"obj":"Protein"},{"id":"T8743","span":{"begin":14,"end":21},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"In addition, sTNFp55R infusion effectively alleviated SE-induced p65-Thr435 phosphorylation in endothelial cells, compared to saline infusion (p \u003c 0.05, Figure 5B)."}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T8949","span":{"begin":65,"end":68},"obj":"http://www.uniprot.org/uniprot/P21579"},{"id":"T8939","span":{"begin":65,"end":68},"obj":"http://www.uniprot.org/uniprot/Q04206"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"In addition, sTNFp55R infusion effectively alleviated SE-induced p65-Thr435 phosphorylation in endothelial cells, compared to saline infusion (p \u003c 0.05, Figure 5B)."}
GO-BP
{"project":"GO-BP","denotations":[{"id":"T8751","span":{"begin":76,"end":91},"obj":"http://purl.obolibrary.org/obo/GO_0016310"}],"text":"In addition, sTNFp55R infusion effectively alleviated SE-induced p65-Thr435 phosphorylation in endothelial cells, compared to saline infusion (p \u003c 0.05, Figure 5B)."}
GO-CC
{"project":"GO-CC","denotations":[{"id":"T8758","span":{"begin":107,"end":112},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"In addition, sTNFp55R infusion effectively alleviated SE-induced p65-Thr435 phosphorylation in endothelial cells, compared to saline infusion (p \u003c 0.05, Figure 5B)."}
sentences
{"project":"sentences","denotations":[{"id":"T8690","span":{"begin":0,"end":164},"obj":"Sentence"},{"id":"T171","span":{"begin":0,"end":164},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"In addition, sTNFp55R infusion effectively alleviated SE-induced p65-Thr435 phosphorylation in endothelial cells, compared to saline infusion (p \u003c 0.05, Figure 5B)."}
simple1
{"project":"simple1","denotations":[{"id":"T8772","span":{"begin":65,"end":68},"obj":"Protein"},{"id":"T8771","span":{"begin":14,"end":21},"obj":"Protein"}],"text":"In addition, sTNFp55R infusion effectively alleviated SE-induced p65-Thr435 phosphorylation in endothelial cells, compared to saline infusion (p \u003c 0.05, Figure 5B)."}
BioNLP16_DUT
{"project":"BioNLP16_DUT","denotations":[{"id":"T9290","span":{"begin":76,"end":91},"obj":"Phosphorylation"},{"id":"T9289","span":{"begin":54,"end":64},"obj":"Positive_regulation"},{"id":"T9280","span":{"begin":65,"end":68},"obj":"Protein"},{"id":"T9279","span":{"begin":14,"end":21},"obj":"Protein"}],"relations":[{"id":"R7590","pred":"themeOf","subj":"T9280","obj":"T9290"},{"id":"R7596","pred":"themeOf","subj":"T9290","obj":"T9289"}],"text":"In addition, sTNFp55R infusion effectively alleviated SE-induced p65-Thr435 phosphorylation in endothelial cells, compared to saline infusion (p \u003c 0.05, Figure 5B)."}
BioNLP16_Messiy
{"project":"BioNLP16_Messiy","denotations":[{"id":"T9133","span":{"begin":43,"end":53},"obj":"Negative_regulation"},{"id":"T9132","span":{"begin":76,"end":91},"obj":"Phosphorylation"},{"id":"T9131","span":{"begin":54,"end":64},"obj":"Positive_regulation"},{"id":"T9123","span":{"begin":65,"end":68},"obj":"Protein"},{"id":"T9122","span":{"begin":14,"end":21},"obj":"Protein"}],"relations":[{"id":"R7484","pred":"causeOf","subj":"T9122","obj":"T9133"},{"id":"R7485","pred":"causeOf","subj":"T9122","obj":"T9133"},{"id":"R7486","pred":"themeOf","subj":"T9123","obj":"T9132"},{"id":"R7491","pred":"themeOf","subj":"T9131","obj":"T9133"},{"id":"R7492","pred":"themeOf","subj":"T9132","obj":"T9133"},{"id":"R7493","pred":"themeOf","subj":"T9132","obj":"T9131"}],"text":"In addition, sTNFp55R infusion effectively alleviated SE-induced p65-Thr435 phosphorylation in endothelial cells, compared to saline infusion (p \u003c 0.05, Figure 5B)."}
DLUT931
{"project":"DLUT931","denotations":[{"id":"T9184","span":{"begin":43,"end":53},"obj":"Negative_regulation"},{"id":"T9183","span":{"begin":54,"end":64},"obj":"Positive_regulation"},{"id":"T9182","span":{"begin":76,"end":91},"obj":"Phosphorylation"},{"id":"T9173","span":{"begin":65,"end":68},"obj":"Protein"},{"id":"T9172","span":{"begin":14,"end":21},"obj":"Protein"}],"relations":[{"id":"R7514","pred":"themeOf","subj":"T9173","obj":"T9182"},{"id":"R7519","pred":"themeOf","subj":"T9182","obj":"T9183"},{"id":"R7520","pred":"themeOf","subj":"T9183","obj":"T9184"}],"text":"In addition, sTNFp55R infusion effectively alleviated SE-induced p65-Thr435 phosphorylation in endothelial cells, compared to saline infusion (p \u003c 0.05, Figure 5B)."}
bionlp-st-ge-2016-test-ihmc
{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T9329","span":{"begin":14,"end":17},"obj":"Protein"},{"id":"T9328","span":{"begin":123,"end":132},"obj":"Entity"},{"id":"T9319","span":{"begin":95,"end":113},"obj":"Entity"},{"id":"T9318","span":{"begin":54,"end":75},"obj":"Entity"},{"id":"T9316","span":{"begin":14,"end":30},"obj":"Entity"},{"id":"T9310","span":{"begin":143,"end":144},"obj":"Entity"},{"id":"T9304","span":{"begin":133,"end":141},"obj":"Entity"},{"id":"T9294","span":{"begin":54,"end":64},"obj":"Entity"},{"id":"T9291","span":{"begin":54,"end":75},"obj":"Protein"}],"text":"In addition, sTNFp55R infusion effectively alleviated SE-induced p65-Thr435 phosphorylation in endothelial cells, compared to saline infusion (p \u003c 0.05, Figure 5B)."}
bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T9109","span":{"begin":163,"end":164},"obj":"."},{"id":"T9108","span":{"begin":162,"end":163},"obj":"-RRB-"},{"id":"T9107","span":{"begin":160,"end":162},"obj":"NN"},{"id":"T9106","span":{"begin":153,"end":159},"obj":"NN"},{"id":"T9105","span":{"begin":151,"end":152},"obj":","},{"id":"T9104","span":{"begin":147,"end":151},"obj":"CD"},{"id":"T9103","span":{"begin":145,"end":146},"obj":"FW"},{"id":"T9102","span":{"begin":143,"end":144},"obj":"FW"},{"id":"T9101","span":{"begin":142,"end":143},"obj":"-LRB-"},{"id":"T9100","span":{"begin":133,"end":141},"obj":"NN"},{"id":"T9099","span":{"begin":126,"end":132},"obj":"VB"},{"id":"T9098","span":{"begin":123,"end":125},"obj":"TO"},{"id":"T9097","span":{"begin":114,"end":122},"obj":"VBN"},{"id":"T9096","span":{"begin":112,"end":113},"obj":","},{"id":"T9095","span":{"begin":107,"end":112},"obj":"NNS"},{"id":"T9094","span":{"begin":95,"end":106},"obj":"JJ"},{"id":"T9093","span":{"begin":92,"end":94},"obj":"IN"},{"id":"T9092","span":{"begin":76,"end":91},"obj":"NN"},{"id":"T9091","span":{"begin":65,"end":75},"obj":"NN"},{"id":"T9090","span":{"begin":54,"end":64},"obj":"JJ"},{"id":"T9089","span":{"begin":43,"end":53},"obj":"VBD"},{"id":"T9088","span":{"begin":31,"end":42},"obj":"RB"},{"id":"T9087","span":{"begin":22,"end":30},"obj":"NN"},{"id":"T9086","span":{"begin":13,"end":21},"obj":"JJ"},{"id":"T9085","span":{"begin":11,"end":12},"obj":","},{"id":"T9084","span":{"begin":3,"end":11},"obj":"NN"},{"id":"T9083","span":{"begin":0,"end":2},"obj":"IN"}],"relations":[{"id":"R7446","pred":"prep","subj":"T9083","obj":"T9089"},{"id":"R7447","pred":"pobj","subj":"T9084","obj":"T9083"},{"id":"R7448","pred":"punct","subj":"T9085","obj":"T9089"},{"id":"R7449","pred":"amod","subj":"T9086","obj":"T9087"},{"id":"R7450","pred":"nsubj","subj":"T9087","obj":"T9089"},{"id":"R7451","pred":"advmod","subj":"T9088","obj":"T9089"},{"id":"R7452","pred":"ROOT","subj":"T9089","obj":"T9089"},{"id":"R7453","pred":"amod","subj":"T9090","obj":"T9092"},{"id":"R7454","pred":"compound","subj":"T9091","obj":"T9092"},{"id":"R7455","pred":"dobj","subj":"T9092","obj":"T9089"},{"id":"R7456","pred":"prep","subj":"T9093","obj":"T9092"},{"id":"R7457","pred":"amod","subj":"T9094","obj":"T9095"},{"id":"R7458","pred":"pobj","subj":"T9095","obj":"T9093"},{"id":"R7459","pred":"punct","subj":"T9096","obj":"T9089"},{"id":"R7460","pred":"prep","subj":"T9097","obj":"T9089"},{"id":"R7461","pred":"prep","subj":"T9098","obj":"T9097"},{"id":"R7462","pred":"amod","subj":"T9099","obj":"T9100"},{"id":"R7463","pred":"pobj","subj":"T9100","obj":"T9098"},{"id":"R7464","pred":"punct","subj":"T9101","obj":"T9100"},{"id":"R7465","pred":"compound","subj":"T9102","obj":"T9104"},{"id":"R7466","pred":"compound","subj":"T9103","obj":"T9104"},{"id":"R7467","pred":"appos","subj":"T9104","obj":"T9100"},{"id":"R7468","pred":"punct","subj":"T9105","obj":"T9104"},{"id":"R7469","pred":"compound","subj":"T9106","obj":"T9107"},{"id":"R7470","pred":"appos","subj":"T9107","obj":"T9104"},{"id":"R7471","pred":"punct","subj":"T9108","obj":"T9100"},{"id":"R7472","pred":"punct","subj":"T9109","obj":"T9089"}],"text":"In addition, sTNFp55R infusion effectively alleviated SE-induced p65-Thr435 phosphorylation in endothelial cells, compared to saline infusion (p \u003c 0.05, Figure 5B)."}
bionlp-st-ge-2016-test-tees
{"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T9225","span":{"begin":54,"end":64},"obj":"Positive_regulation"},{"id":"T9224","span":{"begin":54,"end":64},"obj":"Positive_regulation"},{"id":"T9223","span":{"begin":43,"end":53},"obj":"Positive_regulation"},{"id":"T9222","span":{"begin":43,"end":53},"obj":"Positive_regulation"},{"id":"T9221","span":{"begin":76,"end":91},"obj":"Phosphorylation"},{"id":"T9220","span":{"begin":76,"end":91},"obj":"Phosphorylation"},{"id":"T9219","span":{"begin":69,"end":75},"obj":"Protein"},{"id":"T9218","span":{"begin":65,"end":68},"obj":"Protein"},{"id":"T9217","span":{"begin":13,"end":21},"obj":"Protein"}],"relations":[{"id":"R7544","pred":"themeOf","subj":"T9218","obj":"T9220"},{"id":"R7545","pred":"themeOf","subj":"T9219","obj":"T9221"},{"id":"R7546","pred":"themeOf","subj":"T9220","obj":"T9222"},{"id":"R7547","pred":"themeOf","subj":"T9220","obj":"T9224"},{"id":"R7548","pred":"themeOf","subj":"T9221","obj":"T9223"},{"id":"R7549","pred":"themeOf","subj":"T9221","obj":"T9225"}],"text":"In addition, sTNFp55R infusion effectively alleviated SE-induced p65-Thr435 phosphorylation in endothelial cells, compared to saline infusion (p \u003c 0.05, Figure 5B)."}
testone
{"project":"testone","denotations":[{"id":"T8642","span":{"begin":76,"end":91},"obj":"Phosphorylation"},{"id":"T8641","span":{"begin":57,"end":64},"obj":"Positive_regulation"},{"id":"T8640","span":{"begin":43,"end":53},"obj":"Negative_regulation"},{"id":"T8625","span":{"begin":65,"end":68},"obj":"Protein"},{"id":"T8624","span":{"begin":14,"end":21},"obj":"Protein"}],"relations":[{"id":"R7084","pred":"themeOf","subj":"T8625","obj":"T8642"},{"id":"R7103","pred":"themeOf","subj":"T8641","obj":"T8640"},{"id":"R7104","pred":"themeOf","subj":"T8642","obj":"T8641"}],"text":"In addition, sTNFp55R infusion effectively alleviated SE-induced p65-Thr435 phosphorylation in endothelial cells, compared to saline infusion (p \u003c 0.05, Figure 5B)."}
test3
{"project":"test3","denotations":[{"id":"T8656","span":{"begin":65,"end":68},"obj":"Protein"},{"id":"T8655","span":{"begin":14,"end":21},"obj":"Protein"},{"id":"T8684","span":{"begin":76,"end":91},"obj":"Phosphorylation"},{"id":"T8683","span":{"begin":65,"end":68},"obj":"Protein"},{"id":"T8682","span":{"begin":57,"end":64},"obj":"Positive_regulation"},{"id":"T8681","span":{"begin":43,"end":53},"obj":"Negative_regulation"},{"id":"T8680","span":{"begin":13,"end":21},"obj":"Protein"}],"relations":[{"id":"R7125","pred":"causeOf","subj":"T8680","obj":"T8681"},{"id":"R7126","pred":"themeOf","subj":"T8682","obj":"T8681"},{"id":"R7127","pred":"themeOf","subj":"T8683","obj":"T8684"},{"id":"R7128","pred":"themeOf","subj":"T8684","obj":"T8682"}],"text":"In addition, sTNFp55R infusion effectively alleviated SE-induced p65-Thr435 phosphorylation in endothelial cells, compared to saline infusion (p \u003c 0.05, Figure 5B)."}