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PMC:3312845 / 21771-21935 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T8926 162-163 -RRB- denotes )
T8925 160-162 NN denotes 5B
T8924 153-159 NN denotes Figure
T8923 151-152 -COMMA- denotes ,
T8922 147-151 CD denotes 0.05
T8921 145-146 SYM denotes <
T8920 143-144 NN denotes p
T8919 142-143 -LRB- denotes (
T8918 133-141 NN denotes infusion
T8917 126-132 NN denotes saline
T8916 123-125 TO denotes to
T8915 114-122 VB denotes compared
T8914 112-113 -COMMA- denotes ,
T8913 107-112 NN denotes cells
T8912 95-106 JJ denotes endothelial
T8911 92-94 IN denotes in
T8910 76-91 NN denotes phosphorylation
T8909 65-75 NN denotes p65-Thr435
T8908 54-64 JJ denotes SE-induced
T8907 43-53 VB denotes alleviated
T8906 31-42 RB denotes effectively
T8905 22-30 NN denotes infusion
T8904 13-21 NN denotes sTNFp55R
T8903 11-12 -COMMA- denotes ,
T8902 3-11 NN denotes addition
T8901 0-2 IN denotes In
R7288 T8902 T8901 arg2Of addition,In
R7289 T8905 T8904 arg1Of infusion,sTNFp55R
R7290 T8905 T8907 arg1Of infusion,alleviated
R7291 T8907 T8901 arg1Of alleviated,In
R7292 T8907 T8903 arg1Of alleviated,","
R7293 T8907 T8906 arg1Of alleviated,effectively
R7294 T8907 T8914 arg1Of alleviated,","
R7295 T8907 T8915 arg1Of alleviated,compared
R7296 T8910 T8907 arg2Of phosphorylation,alleviated
R7297 T8910 T8908 arg1Of phosphorylation,SE-induced
R7298 T8910 T8909 arg1Of phosphorylation,p65-Thr435
R7299 T8910 T8911 arg1Of phosphorylation,in
R7300 T8913 T8911 arg2Of cells,in
R7301 T8913 T8912 arg1Of cells,endothelial
R7302 T8916 T8915 arg2Of to,compared
R7303 T8918 T8916 arg2Of infusion,to
R7304 T8918 T8917 arg1Of infusion,saline
R7305 T8918 T8919 arg1Of infusion,(
R7306 T8920 T8919 arg2Of p,(
R7307 T8920 T8921 arg1Of p,<
R7308 T8920 T8922 arg1Of p,0.05
R7309 T8920 T8923 arg1Of p,","
R7310 T8925 T8923 arg2Of 5B,","
R7311 T8925 T8924 arg1Of 5B,Figure
R7312 T8926 T8919 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T8744 65-68 Protein denotes p65
T8743 14-21 Protein denotes TNFp55R

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T8949 65-68 http://www.uniprot.org/uniprot/P21579 denotes p65
T8939 65-68 http://www.uniprot.org/uniprot/Q04206 denotes p65

GO-BP

Id Subject Object Predicate Lexical cue
T8751 76-91 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-CC

Id Subject Object Predicate Lexical cue
T8758 107-112 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T8690 0-164 Sentence denotes In addition, sTNFp55R infusion effectively alleviated SE-induced p65-Thr435 phosphorylation in endothelial cells, compared to saline infusion (p < 0.05, Figure 5B).
T171 0-164 Sentence denotes In addition, sTNFp55R infusion effectively alleviated SE-induced p65-Thr435 phosphorylation in endothelial cells, compared to saline infusion (p < 0.05, Figure 5B).

simple1

Id Subject Object Predicate Lexical cue
T8772 65-68 Protein denotes p65
T8771 14-21 Protein denotes TNFp55R

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T9290 76-91 Phosphorylation denotes phosphorylation
T9289 54-64 Positive_regulation denotes SE-induced
T9280 65-68 Protein denotes p65
T9279 14-21 Protein denotes TNFp55R
R7590 T9280 T9290 themeOf p65,phosphorylation
R7596 T9290 T9289 themeOf phosphorylation,SE-induced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T9133 43-53 Negative_regulation denotes alleviated
T9132 76-91 Phosphorylation denotes phosphorylation
T9131 54-64 Positive_regulation denotes SE-induced
T9123 65-68 Protein denotes p65
T9122 14-21 Protein denotes TNFp55R
R7484 T9122 T9133 causeOf TNFp55R,alleviated
R7485 T9122 T9133 causeOf TNFp55R,alleviated
R7486 T9123 T9132 themeOf p65,phosphorylation
R7491 T9131 T9133 themeOf SE-induced,alleviated
R7492 T9132 T9133 themeOf phosphorylation,alleviated
R7493 T9132 T9131 themeOf phosphorylation,SE-induced

DLUT931

Id Subject Object Predicate Lexical cue
T9184 43-53 Negative_regulation denotes alleviated
T9183 54-64 Positive_regulation denotes SE-induced
T9182 76-91 Phosphorylation denotes phosphorylation
T9173 65-68 Protein denotes p65
T9172 14-21 Protein denotes TNFp55R
R7514 T9173 T9182 themeOf p65,phosphorylation
R7519 T9182 T9183 themeOf phosphorylation,SE-induced
R7520 T9183 T9184 themeOf SE-induced,alleviated

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T9329 14-17 Protein denotes TNF
T9328 123-132 Entity denotes to saline
T9319 95-113 Entity denotes endothelial cells,
T9318 54-75 Entity denotes SE-induced p65-Thr435
T9316 14-30 Entity denotes TNFp55R infusion
T9310 143-144 Entity denotes p
T9304 133-141 Entity denotes infusion
T9294 54-64 Entity denotes SE-induced
T9291 54-75 Protein denotes SE-induced p65-Thr435

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T9109 163-164 . denotes .
T9108 162-163 -RRB- denotes )
T9107 160-162 NN denotes 5B
T9106 153-159 NN denotes Figure
T9105 151-152 , denotes ,
T9104 147-151 CD denotes 0.05
T9103 145-146 FW denotes <
T9102 143-144 FW denotes p
T9101 142-143 -LRB- denotes (
T9100 133-141 NN denotes infusion
T9099 126-132 VB denotes saline
T9098 123-125 TO denotes to
T9097 114-122 VBN denotes compared
T9096 112-113 , denotes ,
T9095 107-112 NNS denotes cells
T9094 95-106 JJ denotes endothelial
T9093 92-94 IN denotes in
T9092 76-91 NN denotes phosphorylation
T9091 65-75 NN denotes p65-Thr435
T9090 54-64 JJ denotes SE-induced
T9089 43-53 VBD denotes alleviated
T9088 31-42 RB denotes effectively
T9087 22-30 NN denotes infusion
T9086 13-21 JJ denotes sTNFp55R
T9085 11-12 , denotes ,
T9084 3-11 NN denotes addition
T9083 0-2 IN denotes In
R7446 T9083 T9089 prep In,alleviated
R7447 T9084 T9083 pobj addition,In
R7448 T9085 T9089 punct ",",alleviated
R7449 T9086 T9087 amod sTNFp55R,infusion
R7450 T9087 T9089 nsubj infusion,alleviated
R7451 T9088 T9089 advmod effectively,alleviated
R7452 T9089 T9089 ROOT alleviated,alleviated
R7453 T9090 T9092 amod SE-induced,phosphorylation
R7454 T9091 T9092 compound p65-Thr435,phosphorylation
R7455 T9092 T9089 dobj phosphorylation,alleviated
R7456 T9093 T9092 prep in,phosphorylation
R7457 T9094 T9095 amod endothelial,cells
R7458 T9095 T9093 pobj cells,in
R7459 T9096 T9089 punct ",",alleviated
R7460 T9097 T9089 prep compared,alleviated
R7461 T9098 T9097 prep to,compared
R7462 T9099 T9100 amod saline,infusion
R7463 T9100 T9098 pobj infusion,to
R7464 T9101 T9100 punct (,infusion
R7465 T9102 T9104 compound p,0.05
R7466 T9103 T9104 compound <,0.05
R7467 T9104 T9100 appos 0.05,infusion
R7468 T9105 T9104 punct ",",0.05
R7469 T9106 T9107 compound Figure,5B
R7470 T9107 T9104 appos 5B,0.05
R7471 T9108 T9100 punct ),infusion
R7472 T9109 T9089 punct .,alleviated

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T9225 54-64 Positive_regulation denotes SE-induced
T9224 54-64 Positive_regulation denotes SE-induced
T9223 43-53 Positive_regulation denotes alleviated
T9222 43-53 Positive_regulation denotes alleviated
T9221 76-91 Phosphorylation denotes phosphorylation
T9220 76-91 Phosphorylation denotes phosphorylation
T9219 69-75 Protein denotes Thr435
T9218 65-68 Protein denotes p65
T9217 13-21 Protein denotes sTNFp55R
R7544 T9218 T9220 themeOf p65,phosphorylation
R7545 T9219 T9221 themeOf Thr435,phosphorylation
R7546 T9220 T9222 themeOf phosphorylation,alleviated
R7547 T9220 T9224 themeOf phosphorylation,SE-induced
R7548 T9221 T9223 themeOf phosphorylation,alleviated
R7549 T9221 T9225 themeOf phosphorylation,SE-induced

testone

Id Subject Object Predicate Lexical cue
T8642 76-91 Phosphorylation denotes phosphorylation
T8641 57-64 Positive_regulation denotes induced
T8640 43-53 Negative_regulation denotes alleviated
T8625 65-68 Protein denotes p65
T8624 14-21 Protein denotes TNFp55R
R7084 T8625 T8642 themeOf p65,phosphorylation
R7103 T8641 T8640 themeOf induced,alleviated
R7104 T8642 T8641 themeOf phosphorylation,induced

test3

Id Subject Object Predicate Lexical cue
T8656 65-68 Protein denotes p65
T8655 14-21 Protein denotes TNFp55R
T8684 76-91 Phosphorylation denotes phosphorylation
T8683 65-68 Protein denotes p65
T8682 57-64 Positive_regulation denotes induced
T8681 43-53 Negative_regulation denotes alleviated
T8680 13-21 Protein denotes sTNFp55R
R7125 T8680 T8681 causeOf sTNFp55R,alleviated
R7126 T8682 T8681 themeOf induced,alleviated
R7127 T8683 T8684 themeOf p65,phosphorylation
R7128 T8684 T8682 themeOf phosphorylation,induced