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PMC:3312845 / 16574-17832 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T7398 1251-1257 NN denotes inputs
T7397 1245-1250 NN denotes image
T7396 1242-1244 CD denotes 15
T7395 1237-1241 IN denotes from
T7394 1228-1236 VB denotes obtained
T7393 1222-1227 NN denotes noise
T7392 1211-1221 NN denotes background
T7391 1208-1210 IN denotes of
T7390 1201-1207 NN denotes values
T7389 1193-1200 JJ denotes average
T7388 1189-1192 DT denotes the
T7387 1177-1188 VB denotes subtracting
T7386 1174-1176 IN denotes by
T7385 1164-1173 VB denotes corrected
T7384 1159-1163 RB denotes then
T7383 1154-1158 VB denotes were
T7382 1147-1153 NN denotes values
T7381 1139-1146 NN denotes density
T7380 1131-1138 JJ denotes Optical
T7379 1121-1129 NN denotes callosum
T7378 1114-1120 NN denotes corpus
T7377 1110-1113 DT denotes the
T7376 1105-1109 IN denotes from
T7375 1096-1104 VB denotes obtained
T7374 1091-1095 VB denotes were
T7373 1082-1090 NN denotes staining
T7372 1071-1081 NN denotes background
T7371 1067-1070 IN denotes for
T7370 1060-1066 NN denotes Values
T7369 1057-1058 -RRB- denotes )
T7368 1049-1057 NN denotes software
T7367 1045-1048 CD denotes 4.8
T7366 1040-1044 NNP denotes Rel.
T7365 1029-1039 NNP denotes AxioVision
T7364 1025-1028 CC denotes and
T7363 1016-1024 NN denotes software
T7362 1011-1015 CD denotes 1.59
T7361 1005-1010 NN denotes Image
T7360 1001-1004 NN denotes NIH
T7359 1000-1001 -LRB- denotes (
T7358 994-999 NN denotes scale
T7357 989-993 JJ denotes gray
T7356 985-988 CD denotes 256
T7355 983-984 DT denotes a
T7354 980-982 IN denotes of
T7353 973-979 NN denotes number
T7352 968-972 JJ denotes mean
T7351 964-967 DT denotes the
T7350 961-963 IN denotes as
T7349 949-960 VB denotes represented
T7348 945-948 VB denotes are
T7347 932-944 NN denotes measurements
T7346 922-931 NN denotes Intensity
T7345 915-920 NN denotes image
T7344 909-914 JJ denotes whole
T7343 905-908 DT denotes the
T7342 902-904 TO denotes to
T7341 890-901 NN denotes adjustments
T7340 879-889 NN denotes brightness
T7339 875-878 CC denotes and
T7338 865-874 NN denotes threshold
T7337 862-864 TO denotes to
T7336 851-861 JJ denotes restricted
T7335 847-850 VB denotes was
T7334 840-846 NN denotes images
T7333 836-839 DT denotes the
T7332 833-835 IN denotes of
T7331 820-832 NN denotes Manipulation
T7330 813-818 NN denotes image
T7329 809-812 DT denotes the
T7328 806-808 IN denotes of
T7327 800-805 NN denotes range
T7326 794-799 JJ denotes white
T7325 790-793 CC denotes and
T7324 784-789 JJ denotes black
T7323 780-783 DT denotes the
T7322 770-779 VB denotes adjusting
T7321 767-769 IN denotes by
T7320 756-766 VB denotes normalized
T7319 752-755 VB denotes was
T7318 746-751 NN denotes image
T7317 741-745 DT denotes each
T7316 739-740 -COMMA- denotes ,
T7315 733-739 NN denotes values
T7314 723-732 NN denotes intensity
T7313 720-722 IN denotes of
T7312 714-719 NN denotes range
T7311 709-713 JJ denotes mean
T7310 705-708 DT denotes the
T7309 702-704 IN denotes on
T7308 696-701 VB denotes Based
T7307 688-694 NN denotes images
T7306 679-687 VB denotes selected
T7305 675-678 DT denotes the
T7304 670-674 IN denotes from
T7303 661-669 VB denotes obtained
T7302 657-660 VB denotes was
T7301 650-656 NN denotes values
T7300 640-649 NN denotes intensity
T7299 637-639 IN denotes of
T7298 631-636 NN denotes range
T7297 627-630 DT denotes The
T7296 624-625 -RRB- denotes )
T7295 617-624 NN denotes post-SE
T7294 613-616 NN denotes day
T7218 210-213 CD denotes 3.0
T7217 207-209 NNP denotes V.
T7216 199-206 NN denotes program
T7215 189-198 NNP denotes ImageTool
T7214 183-188 NNP denotes Texas
T7213 180-182 IN denotes of
T7212 169-179 NNP denotes University
T7211 165-168 DT denotes The
T7210 164-165 -LRB- denotes (
T7209 156-163 NN denotes program
T7208 147-155 NN denotes analysis
T7207 141-146 NN denotes image
T7206 123-140 JJ denotes computer-assisted
T7205 121-122 DT denotes a
T7204 115-120 VB denotes using
T7203 106-114 VB denotes measured
T7202 101-105 VB denotes were
T7201 85-100 NN denotes phosphorylation
T7200 69-84 NN denotes GFPA/p65-Thr435
T7199 66-68 CC denotes or
T7198 50-65 NN denotes phosphorylation
T7197 32-49 NN denotes SMI-71/p65-Thr435
T7196 29-31 IN denotes of
T7195 17-28 NN denotes intensities
T7194 4-16 NN denotes fluorescence
T7193 0-3 DT denotes The
T7293 611-612 CD denotes 1
T7292 607-610 CC denotes and
T7291 599-606 JJ denotes post-SE
T7290 596-598 NN denotes hr
T7289 593-595 CD denotes 12
T7288 591-592 -COMMA- denotes ,
T7287 585-591 JJ denotes non-SE
T7286 582-584 IN denotes in
T7285 580-581 -COMMA- denotes ,
T7284 572-580 VB denotes examined
T7283 565-571 NN denotes region
T7282 561-564 IN denotes per
T7281 558-560 CD denotes 36
T7280 556-557 SYM denotes =
T7279 554-555 NN denotes n
T7278 553-554 -LRB- denotes (
T7277 540-552 RB denotes respectively
T7276 538-539 -COMMA- denotes ,
T7275 532-538 NN denotes images
T7274 522-531 NN denotes grayscale
T7273 519-521 TO denotes to
T7272 509-518 VB denotes converted
T7271 505-508 CC denotes and
T7270 503-504 -COMMA- denotes ,
T7269 498-503 NN denotes image
T7268 492-497 JJ denotes green
T7267 489-491 CC denotes or
T7266 485-488 JJ denotes red
T7265 482-484 TO denotes to
T7264 472-481 VB denotes separated
T7263 462-471 RB denotes digitally
T7262 457-461 VB denotes were
T7261 450-456 NN denotes images
T7260 444-449 NNP denotes Merge
T7259 441-442 -RRB- denotes )
T7258 435-441 NN denotes animal
T7257 430-434 DT denotes each
T7256 425-429 IN denotes from
T7255 416-424 NN denotes sections
T7254 413-415 CD denotes 15
T7253 412-413 -LRB- denotes (
T7252 409-411 NN denotes PC
T7251 405-408 DT denotes the
T7250 400-404 IN denotes from
T7249 391-399 VB denotes captured
T7248 386-390 VB denotes were
T7247 379-385 NN denotes images
T7246 373-378 NN denotes merge
T7245 355-372 JJ denotes immunofluorescent
T7244 348-354 JJ denotes double
T7243 344-347 CC denotes and
T7242 342-343 -COMMA- denotes ,
T7241 340-342 NN denotes PC
T7240 336-339 DT denotes the
T7239 329-335 IN denotes within
T7238 320-328 VB denotes selected
T7237 311-319 RB denotes randomly
T7236 306-310 VB denotes were
T7235 304-305 -RRB- denotes )
T7234 296-304 NN denotes μm2/area
T7233 292-295 CD denotes 300
T7232 291-292 -LRB- denotes (
T7231 281-290 NN denotes areas/rat
T7230 278-280 CD denotes 30
T7229 276-277 -COMMA- denotes ,
T7228 268-276 VB denotes outlined
T7227 263-267 VB denotes were
T7226 255-262 NN denotes regions
T7225 249-254 IN denotes After
T7224 246-247 -RRB- denotes )
T7223 238-246 NN denotes software
T7222 234-237 CD denotes 4.8
T7221 229-233 NNP denotes Rel.
T7220 218-228 NNP denotes AxioVision
T7219 214-217 CC denotes and
R5996 T7195 T7193 arg1Of intensities,The
R5997 T7195 T7194 arg1Of intensities,fluorescence
R5998 T7195 T7196 arg1Of intensities,of
R5999 T7195 T7202 arg1Of intensities,were
R6000 T7195 T7203 arg2Of intensities,measured
R6001 T7198 T7197 arg1Of phosphorylation,SMI-71/p65-Thr435
R6002 T7198 T7199 arg1Of phosphorylation,or
R6003 T7199 T7196 arg2Of or,of
R6004 T7201 T7199 arg2Of phosphorylation,or
R6005 T7201 T7200 arg1Of phosphorylation,GFPA/p65-Thr435
R6006 T7203 T7202 arg2Of measured,were
R6007 T7204 T7203 arg3Of using,measured
R6008 T7209 T7204 arg2Of program,using
R6009 T7209 T7205 arg1Of program,a
R6010 T7209 T7206 arg1Of program,computer-assisted
R6011 T7209 T7207 arg1Of program,image
R6012 T7209 T7208 arg1Of program,analysis
R6013 T7209 T7210 arg1Of program,(
R6014 T7212 T7213 arg1Of University,of
R6015 T7215 T7214 arg1Of ImageTool,Texas
R6016 T7216 T7213 arg2Of program,of
R6017 T7216 T7215 arg1Of program,ImageTool
R6018 T7217 T7212 arg1Of V.,University
R6019 T7217 T7218 arg1Of V.,3.0
R6020 T7217 T7219 arg1Of V.,and
R6021 T7219 T7210 arg2Of and,(
R6022 T7219 T7211 arg1Of and,The
R6023 T7221 T7220 arg1Of Rel.,AxioVision
R6024 T7221 T7222 arg1Of Rel.,4.8
R6025 T7223 T7219 arg2Of software,and
R6026 T7223 T7221 arg1Of software,Rel.
R6027 T7224 T7210 arg3Of ),(
R6028 T7226 T7227 arg1Of regions,were
R6029 T7226 T7228 arg2Of regions,outlined
R6030 T7228 T7225 arg2Of outlined,After
R6031 T7228 T7227 arg2Of outlined,were
R6032 T7231 T7230 arg1Of areas/rat,30
R6033 T7231 T7232 arg1Of areas/rat,(
R6034 T7231 T7236 arg1Of areas/rat,were
R6035 T7231 T7238 arg2Of areas/rat,selected
R6036 T7234 T7232 arg2Of μm2/area,(
R6037 T7234 T7233 arg1Of μm2/area,300
R6038 T7235 T7232 arg3Of ),(
R6039 T7238 T7225 arg1Of selected,After
R6040 T7238 T7229 arg1Of selected,","
R6041 T7238 T7236 arg2Of selected,were
R6042 T7238 T7237 arg1Of selected,randomly
R6043 T7238 T7239 arg1Of selected,within
R6044 T7238 T7243 arg1Of selected,and
R6045 T7241 T7239 arg2Of PC,within
R6046 T7241 T7240 arg1Of PC,the
R6047 T7243 T7242 arg1Of and,","
R6048 T7247 T7244 arg1Of images,double
R6049 T7247 T7245 arg1Of images,immunofluorescent
R6050 T7247 T7246 arg1Of images,merge
R6051 T7247 T7248 arg1Of images,were
R6052 T7247 T7249 arg2Of images,captured
R6053 T7249 T7243 arg2Of captured,and
R6054 T7249 T7248 arg2Of captured,were
R6055 T7249 T7250 arg1Of captured,from
R6056 T7252 T7250 arg2Of PC,from
R6057 T7252 T7251 arg1Of PC,the
R6058 T7252 T7253 arg1Of PC,(
R6059 T7255 T7253 arg2Of sections,(
R6060 T7255 T7254 arg1Of sections,15
R6061 T7255 T7256 arg1Of sections,from
R6062 T7258 T7256 arg2Of animal,from
R6063 T7258 T7257 arg1Of animal,each
R6064 T7259 T7253 arg3Of ),(
R6065 T7261 T7260 arg1Of images,Merge
R6066 T7261 T7262 arg1Of images,were
R6067 T7261 T7264 arg2Of images,separated
R6068 T7261 T7272 arg1Of images,converted
R6069 T7264 T7262 arg2Of separated,were
R6070 T7264 T7263 arg1Of separated,digitally
R6071 T7264 T7265 arg1Of separated,to
R6072 T7264 T7271 arg1Of separated,and
R6073 T7266 T7267 arg1Of red,or
R6074 T7268 T7267 arg2Of green,or
R6075 T7269 T7265 arg2Of image,to
R6076 T7269 T7266 arg1Of image,red
R6077 T7269 T7268 arg1Of image,green
R6078 T7271 T7270 arg1Of and,","
R6079 T7272 T7271 arg2Of converted,and
R6080 T7272 T7273 arg1Of converted,to
R6081 T7275 T7273 arg2Of images,to
R6082 T7275 T7274 arg1Of images,grayscale
R6083 T7275 T7276 arg1Of images,","
R6084 T7275 T7277 arg1Of images,respectively
R6085 T7277 T7278 arg1Of respectively,(
R6086 T7279 T7278 arg2Of n,(
R6087 T7279 T7280 arg1Of n,=
R6088 T7280 T7281 arg1Of =,36
R6089 T7280 T7282 arg1Of =,per
R6090 T7283 T7284 arg2Of region,examined
R6091 T7283 T7288 arg1Of region,","
R6092 T7284 T7285 arg1Of examined,","
R6093 T7284 T7286 arg1Of examined,in
R6094 T7287 T7286 arg2Of non-SE,in
R6095 T7288 T7282 arg2Of ",",per
R6096 T7290 T7289 arg1Of hr,12
R6097 T7290 T7291 arg1Of hr,post-SE
R6098 T7290 T7292 arg1Of hr,and
R6099 T7293 T7292 arg2Of 1,and
R6100 T7295 T7288 arg2Of post-SE,","
R6101 T7295 T7290 arg1Of post-SE,hr
R6102 T7295 T7293 arg1Of post-SE,1
R6103 T7295 T7294 arg1Of post-SE,day
R6104 T7296 T7278 arg3Of ),(
R6105 T7298 T7297 arg1Of range,The
R6106 T7298 T7299 arg1Of range,of
R6107 T7298 T7302 arg1Of range,was
R6108 T7298 T7303 arg2Of range,obtained
R6109 T7301 T7299 arg2Of values,of
R6110 T7301 T7300 arg1Of values,intensity
R6111 T7303 T7302 arg2Of obtained,was
R6112 T7303 T7304 arg1Of obtained,from
R6113 T7307 T7304 arg2Of images,from
R6114 T7307 T7305 arg1Of images,the
R6115 T7307 T7306 arg2Of images,selected
R6116 T7309 T7308 arg2Of on,Based
R6117 T7312 T7309 arg2Of range,on
R6118 T7312 T7310 arg1Of range,the
R6119 T7312 T7311 arg1Of range,mean
R6120 T7312 T7313 arg1Of range,of
R6121 T7315 T7313 arg2Of values,of
R6122 T7315 T7314 arg1Of values,intensity
R6123 T7318 T7317 arg1Of image,each
R6124 T7318 T7319 arg1Of image,was
R6125 T7318 T7320 arg2Of image,normalized
R6126 T7320 T7308 arg1Of normalized,Based
R6127 T7320 T7316 arg1Of normalized,","
R6128 T7320 T7319 arg2Of normalized,was
R6129 T7320 T7321 arg1Of normalized,by
R6130 T7322 T7321 arg2Of adjusting,by
R6131 T7324 T7325 arg1Of black,and
R6132 T7326 T7325 arg2Of white,and
R6133 T7327 T7322 arg2Of range,adjusting
R6134 T7327 T7323 arg1Of range,the
R6135 T7327 T7324 arg1Of range,black
R6136 T7327 T7326 arg1Of range,white
R6137 T7327 T7328 arg1Of range,of
R6138 T7330 T7328 arg2Of image,of
R6139 T7330 T7329 arg1Of image,the
R6140 T7331 T7332 arg1Of Manipulation,of
R6141 T7331 T7335 arg1Of Manipulation,was
R6142 T7331 T7336 arg1Of Manipulation,restricted
R6143 T7334 T7332 arg2Of images,of
R6144 T7334 T7333 arg1Of images,the
R6145 T7336 T7335 arg2Of restricted,was
R6146 T7336 T7337 arg1Of restricted,to
R6147 T7338 T7339 arg1Of threshold,and
R6148 T7339 T7337 arg2Of and,to
R6149 T7339 T7342 arg1Of and,to
R6150 T7341 T7339 arg2Of adjustments,and
R6151 T7341 T7340 arg1Of adjustments,brightness
R6152 T7345 T7342 arg2Of image,to
R6153 T7345 T7343 arg1Of image,the
R6154 T7345 T7344 arg1Of image,whole
R6155 T7347 T7346 arg1Of measurements,Intensity
R6156 T7347 T7348 arg1Of measurements,are
R6157 T7347 T7349 arg2Of measurements,represented
R6158 T7349 T7348 arg2Of represented,are
R6159 T7349 T7350 arg1Of represented,as
R6160 T7353 T7350 arg2Of number,as
R6161 T7353 T7351 arg1Of number,the
R6162 T7353 T7352 arg1Of number,mean
R6163 T7353 T7354 arg1Of number,of
R6164 T7353 T7359 arg1Of number,(
R6165 T7357 T7356 arg1Of gray,256
R6166 T7358 T7354 arg2Of scale,of
R6167 T7358 T7355 arg1Of scale,a
R6168 T7358 T7357 arg1Of scale,gray
R6169 T7363 T7360 arg1Of software,NIH
R6170 T7363 T7361 arg1Of software,Image
R6171 T7363 T7362 arg1Of software,1.59
R6172 T7363 T7364 arg1Of software,and
R6173 T7364 T7359 arg2Of and,(
R6174 T7366 T7365 arg1Of Rel.,AxioVision
R6175 T7366 T7367 arg1Of Rel.,4.8
R6176 T7368 T7364 arg2Of software,and
R6177 T7368 T7366 arg1Of software,Rel.
R6178 T7369 T7359 arg3Of ),(
R6179 T7370 T7371 arg1Of Values,for
R6180 T7370 T7374 arg1Of Values,were
R6181 T7370 T7375 arg2Of Values,obtained
R6182 T7373 T7371 arg2Of staining,for
R6183 T7373 T7372 arg1Of staining,background
R6184 T7375 T7374 arg2Of obtained,were
R6185 T7375 T7376 arg1Of obtained,from
R6186 T7379 T7376 arg2Of callosum,from
R6187 T7379 T7377 arg1Of callosum,the
R6188 T7379 T7378 arg1Of callosum,corpus
R6189 T7382 T7380 arg1Of values,Optical
R6190 T7382 T7381 arg1Of values,density
R6191 T7382 T7383 arg1Of values,were
R6192 T7382 T7385 arg2Of values,corrected
R6193 T7385 T7383 arg2Of corrected,were
R6194 T7385 T7384 arg1Of corrected,then
R6195 T7385 T7386 arg1Of corrected,by
R6196 T7387 T7386 arg2Of subtracting,by
R6197 T7390 T7387 arg2Of values,subtracting
R6198 T7390 T7388 arg1Of values,the
R6199 T7390 T7389 arg1Of values,average
R6200 T7390 T7391 arg1Of values,of
R6201 T7393 T7391 arg2Of noise,of
R6202 T7393 T7392 arg1Of noise,background
R6203 T7393 T7394 arg2Of noise,obtained
R6204 T7394 T7395 arg1Of obtained,from
R6205 T7398 T7395 arg2Of inputs,from
R6206 T7398 T7396 arg1Of inputs,15
R6207 T7398 T7397 arg1Of inputs,image

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T7185 74-77 Protein denotes p65
T7184 39-42 Protein denotes p65

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T7402 74-77 http://www.uniprot.org/uniprot/P21579 denotes p65
T7401 39-42 http://www.uniprot.org/uniprot/P21579 denotes p65
T7400 74-77 http://www.uniprot.org/uniprot/Q04206 denotes p65
T7399 39-42 http://www.uniprot.org/uniprot/Q04206 denotes p65

UBERON-AE

Id Subject Object Predicate Lexical cue
T7167 1114-1129 http://purl.obolibrary.org/obo/UBERON_0002336 denotes corpus callosum
T7166 1114-1120 http://purl.obolibrary.org/obo/UBERON_3000645 denotes corpus
T7165 994-999 http://purl.obolibrary.org/obo/UBERON_0002542 denotes scale
T7164 462-471 http://purl.obolibrary.org/obo/UBERON_0002544 denotes digitally

GO-BP

Id Subject Object Predicate Lexical cue
T7187 85-100 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T7186 50-65 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

sentences

Id Subject Object Predicate Lexical cue
T7177 1131-1258 Sentence denotes Optical density values were then corrected by subtracting the average values of background noise obtained from 15 image inputs.
T7176 1060-1130 Sentence denotes Values for background staining were obtained from the corpus callosum.
T7175 922-1059 Sentence denotes Intensity measurements are represented as the mean number of a 256 gray scale (NIH Image 1.59 software and AxioVision Rel. 4.8 software).
T7174 820-921 Sentence denotes Manipulation of the images was restricted to threshold and brightness adjustments to the whole image.
T7173 696-819 Sentence denotes Based on the mean range of intensity values, each image was normalized by adjusting the black and white range of the image.
T7172 627-695 Sentence denotes The range of intensity values was obtained from the selected images.
T7171 444-626 Sentence denotes Merge images were digitally separated to red or green image, and converted to grayscale images, respectively (n = 36 per region examined, in non-SE, 12 hr post-SE and 1 day post-SE).
T7170 249-443 Sentence denotes After regions were outlined, 30 areas/rat (300 μm2/area) were randomly selected within the PC, and double immunofluorescent merge images were captured from the PC (15 sections from each animal).
T7169 0-248 Sentence denotes The fluorescence intensities of SMI-71/p65-Thr435 phosphorylation or GFPA/p65-Thr435 phosphorylation were measured using a computer-assisted image analysis program (The University of Texas ImageTool program V. 3.0 and AxioVision Rel. 4.8 software).
T127 0-209 Sentence denotes The fluorescence intensities of SMI-71/p65-Thr435 phosphorylation or GFPA/p65-Thr435 phosphorylation were measured using a computer-assisted image analysis program (The University of Texas ImageTool program V.
T128 210-233 Sentence denotes 3.0 and AxioVision Rel.
T129 234-248 Sentence denotes 4.8 software).
T130 249-443 Sentence denotes After regions were outlined, 30 areas/rat (300 μm2/area) were randomly selected within the PC, and double immunofluorescent merge images were captured from the PC (15 sections from each animal).
T131 444-626 Sentence denotes Merge images were digitally separated to red or green image, and converted to grayscale images, respectively (n = 36 per region examined, in non-SE, 12 hr post-SE and 1 day post-SE).
T132 627-695 Sentence denotes The range of intensity values was obtained from the selected images.
T133 696-819 Sentence denotes Based on the mean range of intensity values, each image was normalized by adjusting the black and white range of the image.
T134 820-921 Sentence denotes Manipulation of the images was restricted to threshold and brightness adjustments to the whole image.
T135 922-1044 Sentence denotes Intensity measurements are represented as the mean number of a 256 gray scale (NIH Image 1.59 software and AxioVision Rel.
T136 1045-1059 Sentence denotes 4.8 software).
T137 1060-1130 Sentence denotes Values for background staining were obtained from the corpus callosum.
T138 1131-1258 Sentence denotes Optical density values were then corrected by subtracting the average values of background noise obtained from 15 image inputs.

simple1

Id Subject Object Predicate Lexical cue
T7189 74-77 Protein denotes p65
T7188 39-42 Protein denotes p65

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T7642 50-65 Phosphorylation denotes phosphorylation
T7641 85-100 Phosphorylation denotes phosphorylation
T7640 74-77 Protein denotes p65
T7639 39-42 Protein denotes p65
R6438 T7639 T7642 themeOf p65,phosphorylation
R6439 T7639 T7641 themeOf p65,phosphorylation
R6440 T7640 T7641 themeOf p65,phosphorylation

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T7630 85-100 Phosphorylation denotes phosphorylation
T7629 74-77 Protein denotes p65
T7628 39-42 Protein denotes p65
R6433 T7629 T7630 themeOf p65,phosphorylation

DLUT931

Id Subject Object Predicate Lexical cue
T7634 85-100 Phosphorylation denotes phosphorylation
T7633 50-65 Phosphorylation denotes phosphorylation
T7632 74-77 Protein denotes p65
T7631 39-42 Protein denotes p65
R6434 T7631 T7633 themeOf p65,phosphorylation
R6435 T7632 T7634 themeOf p65,phosphorylation

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T7648 820-920 Negative_regulation denotes Manipulation of the images was restricted to threshold and brightness adjustments to the whole image
T7647 405-442 Protein denotes the PC (15 sections from each animal)
T7646 1029-1043 Protein denotes AxioVision Rel
T7645 218-232 Protein denotes AxioVision Rel
T7644 336-342 Protein denotes the PC
T7643 554-591 Entity denotes n = 36 per region examined, in non-SE

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T7627 1257-1258 . denotes .
T7626 1251-1257 NNS denotes inputs
T7625 1245-1250 NN denotes image
T7624 1242-1244 CD denotes 15
T7623 1237-1241 IN denotes from
T7622 1228-1236 VBN denotes obtained
T7621 1222-1227 NN denotes noise
T7620 1211-1221 NN denotes background
T7619 1208-1210 IN denotes of
T7618 1201-1207 NNS denotes values
T7617 1193-1200 JJ denotes average
T7616 1189-1192 DT denotes the
T7615 1177-1188 VBG denotes subtracting
T7614 1174-1176 IN denotes by
T7613 1164-1173 VBN denotes corrected
T7591 1040-1043 NNP denotes Rel
T7590 1029-1039 NNP denotes AxioVision
T7589 1025-1028 CC denotes and
T7588 1016-1024 NN denotes software
T7587 1011-1015 CD denotes 1.59
T7586 1005-1010 NN denotes Image
T7585 1001-1004 NNP denotes NIH
T7584 1000-1001 -LRB- denotes (
T7583 994-999 NN denotes scale
T7582 989-993 JJ denotes gray
T7581 985-988 CD denotes 256
T7580 983-984 DT denotes a
T7579 980-982 IN denotes of
T7578 973-979 NN denotes number
T7577 968-972 JJ denotes mean
T7576 964-967 DT denotes the
T7575 961-963 IN denotes as
T7574 949-960 VBN denotes represented
T7573 945-948 VBP denotes are
T7572 932-944 NNS denotes measurements
T7571 922-931 NN denotes Intensity
T7570 920-921 . denotes .
T7569 915-920 NN denotes image
T7568 909-914 JJ denotes whole
T7567 905-908 DT denotes the
T7566 902-904 TO denotes to
T7565 890-901 NNS denotes adjustments
T7564 879-889 NN denotes brightness
T7563 875-878 CC denotes and
T7562 865-874 NN denotes threshold
T7561 862-864 TO denotes to
T7560 851-861 VBN denotes restricted
T7559 847-850 VBD denotes was
T7558 840-846 NNS denotes images
T7557 836-839 DT denotes the
T7556 833-835 IN denotes of
T7555 820-832 NN denotes Manipulation
T7554 818-819 . denotes .
T7553 813-818 NN denotes image
T7552 809-812 DT denotes the
T7551 806-808 IN denotes of
T7550 800-805 NN denotes range
T7549 794-799 JJ denotes white
T7548 790-793 CC denotes and
T7547 784-789 JJ denotes black
T7546 780-783 DT denotes the
T7545 770-779 VBG denotes adjusting
T7544 767-769 IN denotes by
T7543 756-766 VBN denotes normalized
T7542 752-755 VBD denotes was
T7541 746-751 NN denotes image
T7540 741-745 DT denotes each
T7539 739-740 , denotes ,
T7538 733-739 NNS denotes values
T7537 723-732 NN denotes intensity
T7536 720-722 IN denotes of
T7535 714-719 NN denotes range
T7534 709-713 JJ denotes mean
T7509 591-592 , denotes ,
T7508 585-591 JJ denotes non-SE
T7507 582-584 IN denotes in
T7506 580-581 , denotes ,
T7505 572-580 VBD denotes examined
T7504 565-571 NN denotes region
T7503 561-564 IN denotes per
T7502 558-560 CD denotes 36
T7501 556-557 SYM denotes =
T7500 554-555 FW denotes n
T7499 553-554 -LRB- denotes (
T7498 540-552 RB denotes respectively
T7497 538-539 , denotes ,
T7496 532-538 NNS denotes images
T7495 522-531 VB denotes grayscale
T7494 519-521 TO denotes to
T7493 509-518 VBD denotes converted
T7492 505-508 CC denotes and
T7491 503-504 , denotes ,
T7490 498-503 NN denotes image
T7489 492-497 JJ denotes green
T7488 489-491 CC denotes or
T7487 485-488 JJ denotes red
T7486 482-484 TO denotes to
T7485 472-481 VBN denotes separated
T7484 462-471 RB denotes digitally
T7483 457-461 VBD denotes were
T7482 450-456 NNS denotes images
T7481 444-449 VB denotes Merge
T7480 442-443 . denotes .
T7479 441-442 -RRB- denotes )
T7478 435-441 NN denotes animal
T7477 430-434 DT denotes each
T7476 425-429 IN denotes from
T7475 416-424 NNS denotes sections
T7474 413-415 CD denotes 15
T7473 412-413 -LRB- denotes (
T7472 409-411 NN denotes PC
T7471 405-408 DT denotes the
T7470 400-404 IN denotes from
T7469 391-399 VBN denotes captured
T7468 386-390 VBD denotes were
T7467 379-385 NNS denotes images
T7466 373-378 VBP denotes merge
T7465 355-372 JJ denotes immunofluorescent
T7464 348-354 JJ denotes double
T7463 344-347 CC denotes and
T7462 342-343 , denotes ,
T7461 340-342 NN denotes PC
T7460 336-339 DT denotes the
T7459 329-335 IN denotes within
T7458 320-328 VBN denotes selected
T7457 311-319 RB denotes randomly
T7456 306-310 VBD denotes were
T7455 304-305 -RRB- denotes )
T7454 300-304 NN denotes area
T7453 299-300 NN denotes /
T7452 296-299 CD denotes μm2
T7451 292-295 CD denotes 300
T7450 291-292 -LRB- denotes (
T7449 281-290 NN denotes areas/rat
T7448 278-280 CD denotes 30
T7447 276-277 , denotes ,
T7446 268-276 VBN denotes outlined
T7445 263-267 VBD denotes were
T7444 255-262 NNS denotes regions
T7443 249-254 IN denotes After
T7442 247-248 . denotes .
T7441 246-247 -RRB- denotes )
T7440 238-246 NN denotes software
T7439 234-237 CD denotes 4.8
T7438 232-233 . denotes .
T7437 229-232 NNP denotes Rel
T7436 218-228 NNP denotes AxioVision
T7435 214-217 CC denotes and
T7434 210-213 CD denotes 3.0
T7433 207-209 NNP denotes V.
T7432 199-206 NN denotes program
T7431 189-198 NNP denotes ImageTool
T7430 183-188 NNP denotes Texas
T7429 180-182 IN denotes of
T7428 169-179 NNP denotes University
T7427 165-168 DT denotes The
T7426 164-165 -LRB- denotes (
T7425 156-163 NN denotes program
T7424 147-155 NN denotes analysis
T7423 141-146 NN denotes image
T7422 123-140 JJ denotes computer-assisted
T7421 121-122 DT denotes a
T7420 115-120 VBG denotes using
T7419 106-114 VBN denotes measured
T7418 101-105 VBD denotes were
T7417 85-100 NN denotes phosphorylation
T7416 81-84 CD denotes 435
T7415 69-81 NN denotes GFPA/p65-Thr
T7414 66-68 CC denotes or
T7413 50-65 NN denotes phosphorylation
T7412 39-49 NNP denotes p65-Thr435
T7411 38-39 NNP denotes /
T7410 32-38 NNP denotes SMI-71
T7409 29-31 IN denotes of
T7408 17-28 NNS denotes intensities
T7407 4-16 NN denotes fluorescence
T7406 0-3 DT denotes The
T7533 705-708 DT denotes the
T7532 702-704 IN denotes on
T7531 696-701 VBN denotes Based
T7530 694-695 . denotes .
T7529 688-694 NNS denotes images
T7528 679-687 VBN denotes selected
T7527 675-678 DT denotes the
T7526 670-674 IN denotes from
T7525 661-669 VBN denotes obtained
T7524 657-660 VBD denotes was
T7523 650-656 NNS denotes values
T7522 640-649 NN denotes intensity
T7521 637-639 IN denotes of
T7520 631-636 NN denotes range
T7519 627-630 DT denotes The
T7518 625-626 . denotes .
T7517 624-625 -RRB- denotes )
T7516 617-624 JJ denotes post-SE
T7515 613-616 NN denotes day
T7514 611-612 CD denotes 1
T7513 607-610 CC denotes and
T7512 599-606 JJ denotes post-SE
T7511 596-598 NN denotes hr
T7510 593-595 CD denotes 12
T7612 1159-1163 RB denotes then
T7611 1154-1158 VBD denotes were
T7610 1147-1153 NNS denotes values
T7609 1139-1146 NN denotes density
T7608 1131-1138 NNP denotes Optical
T7607 1129-1130 . denotes .
T7606 1121-1129 NN denotes callosum
T7605 1114-1120 NN denotes corpus
T7604 1110-1113 DT denotes the
T7603 1105-1109 IN denotes from
T7602 1096-1104 VBN denotes obtained
T7601 1091-1095 VBD denotes were
T7600 1082-1090 VBG denotes staining
T7599 1071-1081 NN denotes background
T7598 1067-1070 IN denotes for
T7597 1060-1066 NNS denotes Values
T7596 1058-1059 . denotes .
T7595 1057-1058 -RRB- denotes )
T7594 1049-1057 NN denotes software
T7593 1045-1048 CD denotes 4.8
T7592 1043-1044 . denotes .
R6211 T7406 T7408 det The,intensities
R6212 T7407 T7408 compound fluorescence,intensities
R6213 T7408 T7419 nsubjpass intensities,measured
R6214 T7409 T7408 prep of,intensities
R6215 T7410 T7413 compound SMI-71,phosphorylation
R6216 T7411 T7413 compound /,phosphorylation
R6217 T7412 T7413 compound p65-Thr435,phosphorylation
R6218 T7413 T7409 pobj phosphorylation,of
R6219 T7414 T7413 cc or,phosphorylation
R6220 T7415 T7413 conj GFPA/p65-Thr,phosphorylation
R6221 T7416 T7417 nummod 435,phosphorylation
R6222 T7417 T7419 nsubjpass phosphorylation,measured
R6223 T7418 T7419 auxpass were,measured
R6224 T7419 T7419 ROOT measured,measured
R6225 T7420 T7419 advcl using,measured
R6226 T7421 T7425 det a,program
R6227 T7422 T7425 amod computer-assisted,program
R6228 T7423 T7424 compound image,analysis
R6229 T7424 T7425 compound analysis,program
R6230 T7425 T7420 dobj program,using
R6231 T7426 T7425 punct (,program
R6232 T7427 T7428 det The,University
R6233 T7428 T7433 nmod University,V.
R6234 T7429 T7428 prep of,University
R6235 T7430 T7429 pobj Texas,of
R6236 T7431 T7433 compound ImageTool,V.
R6237 T7432 T7433 compound program,V.
R6238 T7433 T7425 appos V.,program
R6239 T7434 T7433 nummod 3.0,V.
R6240 T7435 T7433 cc and,V.
R6241 T7436 T7437 compound AxioVision,Rel
R6242 T7437 T7433 conj Rel,V.
R6243 T7438 T7419 punct .,measured
R6244 T7439 T7440 nummod 4.8,software
R6245 T7440 T7440 ROOT software,software
R6246 T7441 T7440 punct ),software
R6247 T7442 T7440 punct .,software
R6248 T7443 T7446 mark After,outlined
R6249 T7444 T7446 nsubjpass regions,outlined
R6250 T7445 T7446 auxpass were,outlined
R6251 T7446 T7458 advcl outlined,selected
R6252 T7447 T7446 punct ",",outlined
R6253 T7448 T7449 nummod 30,areas/rat
R6254 T7449 T7458 nsubjpass areas/rat,selected
R6255 T7450 T7449 punct (,areas/rat
R6256 T7451 T7454 nummod 300,area
R6257 T7452 T7454 nummod μm2,area
R6258 T7453 T7454 compound /,area
R6259 T7454 T7449 appos area,areas/rat
R6260 T7455 T7449 punct ),areas/rat
R6261 T7456 T7458 auxpass were,selected
R6262 T7457 T7458 advmod randomly,selected
R6263 T7458 T7458 ROOT selected,selected
R6264 T7459 T7458 prep within,selected
R6265 T7460 T7461 det the,PC
R6266 T7461 T7459 pobj PC,within
R6267 T7462 T7458 punct ",",selected
R6268 T7463 T7458 cc and,selected
R6269 T7464 T7465 amod double,immunofluorescent
R6270 T7465 T7467 amod immunofluorescent,images
R6271 T7466 T7467 compound merge,images
R6272 T7467 T7469 nsubjpass images,captured
R6273 T7468 T7469 auxpass were,captured
R6274 T7469 T7458 conj captured,selected
R6275 T7470 T7469 prep from,captured
R6276 T7471 T7472 det the,PC
R6277 T7472 T7470 pobj PC,from
R6278 T7473 T7472 punct (,PC
R6279 T7474 T7475 nummod 15,sections
R6280 T7475 T7469 npadvmod sections,captured
R6281 T7476 T7475 prep from,sections
R6282 T7477 T7478 det each,animal
R6283 T7478 T7476 pobj animal,from
R6284 T7479 T7469 punct ),captured
R6285 T7480 T7469 punct .,captured
R6286 T7481 T7482 compound Merge,images
R6287 T7482 T7485 nsubjpass images,separated
R6288 T7483 T7485 auxpass were,separated
R6289 T7484 T7485 advmod digitally,separated
R6290 T7485 T7485 ROOT separated,separated
R6291 T7486 T7485 prep to,separated
R6292 T7487 T7490 amod red,image
R6293 T7488 T7487 cc or,red
R6294 T7489 T7487 conj green,red
R6295 T7490 T7486 pobj image,to
R6296 T7491 T7485 punct ",",separated
R6297 T7492 T7485 cc and,separated
R6298 T7493 T7485 conj converted,separated
R6299 T7494 T7495 aux to,grayscale
R6300 T7495 T7493 advcl grayscale,converted
R6301 T7496 T7495 dobj images,grayscale
R6302 T7497 T7496 punct ",",images
R6303 T7498 T7495 advmod respectively,grayscale
R6304 T7499 T7495 punct (,grayscale
R6305 T7500 T7502 advmod n,36
R6306 T7501 T7502 punct =,36
R6307 T7502 T7505 nsubj 36,examined
R6308 T7503 T7502 prep per,36
R6309 T7504 T7503 pobj region,per
R6310 T7505 T7493 conj examined,converted
R6311 T7506 T7505 punct ",",examined
R6312 T7507 T7505 prep in,examined
R6313 T7508 T7507 pobj non-SE,in
R6314 T7509 T7512 punct ",",post-SE
R6315 T7510 T7512 nummod 12,post-SE
R6316 T7511 T7512 compound hr,post-SE
R6317 T7512 T7505 punct post-SE,examined
R6318 T7513 T7512 cc and,post-SE
R6319 T7514 T7515 nummod 1,day
R6320 T7515 T7516 npadvmod day,post-SE
R6321 T7516 T7512 conj post-SE,post-SE
R6322 T7517 T7516 punct ),post-SE
R6323 T7518 T7485 punct .,separated
R6324 T7519 T7520 det The,range
R6325 T7520 T7525 nsubjpass range,obtained
R6326 T7521 T7520 prep of,range
R6327 T7522 T7523 compound intensity,values
R6328 T7523 T7521 pobj values,of
R6329 T7524 T7525 auxpass was,obtained
R6330 T7525 T7525 ROOT obtained,obtained
R6331 T7526 T7525 prep from,obtained
R6332 T7527 T7529 det the,images
R6333 T7528 T7529 amod selected,images
R6334 T7529 T7526 pobj images,from
R6335 T7530 T7525 punct .,obtained
R6336 T7531 T7543 advcl Based,normalized
R6337 T7532 T7531 prep on,Based
R6338 T7533 T7535 det the,range
R6339 T7534 T7535 amod mean,range
R6340 T7535 T7532 pobj range,on
R6341 T7536 T7535 prep of,range
R6342 T7537 T7538 compound intensity,values
R6343 T7538 T7536 pobj values,of
R6344 T7539 T7543 punct ",",normalized
R6345 T7540 T7541 det each,image
R6346 T7541 T7543 nsubjpass image,normalized
R6347 T7542 T7543 auxpass was,normalized
R6348 T7543 T7543 ROOT normalized,normalized
R6349 T7544 T7543 prep by,normalized
R6350 T7545 T7544 pcomp adjusting,by
R6351 T7546 T7550 det the,range
R6352 T7547 T7550 amod black,range
R6353 T7548 T7547 cc and,black
R6354 T7549 T7547 conj white,black
R6355 T7550 T7545 dobj range,adjusting
R6356 T7551 T7550 prep of,range
R6357 T7552 T7553 det the,image
R6358 T7553 T7551 pobj image,of
R6359 T7554 T7543 punct .,normalized
R6360 T7555 T7560 nsubjpass Manipulation,restricted
R6361 T7556 T7555 prep of,Manipulation
R6362 T7557 T7558 det the,images
R6363 T7558 T7556 pobj images,of
R6364 T7559 T7560 auxpass was,restricted
R6365 T7560 T7560 ROOT restricted,restricted
R6366 T7561 T7560 prep to,restricted
R6367 T7562 T7565 nmod threshold,adjustments
R6368 T7563 T7562 cc and,threshold
R6369 T7564 T7562 conj brightness,threshold
R6370 T7565 T7561 pobj adjustments,to
R6371 T7566 T7565 prep to,adjustments
R6372 T7567 T7569 det the,image
R6373 T7568 T7569 amod whole,image
R6374 T7569 T7566 pobj image,to
R6375 T7570 T7560 punct .,restricted
R6376 T7571 T7572 compound Intensity,measurements
R6377 T7572 T7574 nsubjpass measurements,represented
R6378 T7573 T7574 auxpass are,represented
R6379 T7574 T7574 ROOT represented,represented
R6380 T7575 T7574 prep as,represented
R6381 T7576 T7578 det the,number
R6382 T7577 T7578 amod mean,number
R6383 T7578 T7575 pobj number,as
R6384 T7579 T7578 prep of,number
R6385 T7580 T7583 det a,scale
R6386 T7581 T7583 nummod 256,scale
R6387 T7582 T7583 amod gray,scale
R6388 T7583 T7588 nmod scale,software
R6389 T7584 T7588 punct (,software
R6390 T7585 T7586 compound NIH,Image
R6391 T7586 T7588 nmod Image,software
R6392 T7587 T7586 nummod 1.59,Image
R6393 T7588 T7579 pobj software,of
R6394 T7589 T7588 cc and,software
R6395 T7590 T7591 compound AxioVision,Rel
R6396 T7591 T7588 conj Rel,software
R6397 T7592 T7574 punct .,represented
R6398 T7593 T7594 nummod 4.8,software
R6399 T7594 T7594 ROOT software,software
R6400 T7595 T7594 punct ),software
R6401 T7596 T7594 punct .,software
R6402 T7597 T7602 nsubjpass Values,obtained
R6403 T7598 T7597 prep for,Values
R6404 T7599 T7598 pobj background,for
R6405 T7600 T7597 acl staining,Values
R6406 T7601 T7602 auxpass were,obtained
R6407 T7602 T7602 ROOT obtained,obtained
R6408 T7603 T7602 prep from,obtained
R6409 T7604 T7606 det the,callosum
R6410 T7605 T7606 compound corpus,callosum
R6411 T7606 T7603 pobj callosum,from
R6412 T7607 T7602 punct .,obtained
R6413 T7608 T7610 compound Optical,values
R6414 T7609 T7610 compound density,values
R6415 T7610 T7613 nsubjpass values,corrected
R6416 T7611 T7613 auxpass were,corrected
R6417 T7612 T7613 advmod then,corrected
R6418 T7613 T7613 ROOT corrected,corrected
R6419 T7614 T7613 agent by,corrected
R6420 T7615 T7614 pcomp subtracting,by
R6421 T7616 T7618 det the,values
R6422 T7617 T7618 amod average,values
R6423 T7618 T7615 dobj values,subtracting
R6424 T7619 T7618 prep of,values
R6425 T7620 T7621 compound background,noise
R6426 T7621 T7619 pobj noise,of
R6427 T7622 T7613 conj obtained,corrected
R6428 T7623 T7622 prep from,obtained
R6429 T7624 T7626 nummod 15,inputs
R6430 T7625 T7626 compound image,inputs
R6431 T7626 T7623 pobj inputs,from
R6432 T7627 T7613 punct .,corrected

testone

Id Subject Object Predicate Lexical cue
T7157 85-100 Phosphorylation denotes phosphorylation
T7156 50-65 Phosphorylation denotes phosphorylation
T7155 74-77 Protein denotes p65
T7154 39-42 Protein denotes p65
R5986 T7154 T7156 themeOf p65,phosphorylation
R5987 T7155 T7157 themeOf p65,phosphorylation

test3

Id Subject Object Predicate Lexical cue
T7163 85-100 Phosphorylation denotes phosphorylation
T7162 74-77 Protein denotes p65
T7161 50-65 Phosphorylation denotes phosphorylation
T7160 39-42 Protein denotes p65
T7159 74-77 Protein denotes p65
T7158 39-42 Protein denotes p65
R5988 T7160 T7161 themeOf p65,phosphorylation
R5989 T7162 T7163 themeOf p65,phosphorylation