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PMC:3312845 / 1188-1424 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T408 220-235 NN denotes phosphorylation
T407 209-219 NN denotes p65-Thr435
T406 206-208 IN denotes of
T405 195-205 NN denotes inhibition
T404 191-194 IN denotes via
T403 183-190 NN denotes damages
T402 174-182 JJ denotes neuronal
T401 170-173 CC denotes and
T400 164-169 NN denotes edema
T399 154-163 JJ denotes vasogenic
T398 143-153 JJ denotes SE-induced
T397 132-142 VB denotes attenuated
T396 123-131 NN denotes infusion
T395 121-122 -RRB- denotes )
T394 113-121 NN denotes sTNFp55R
T393 112-113 -LRB- denotes (
T392 103-111 NN denotes receptor
T391 99-102 NN denotes p55
T390 95-98 NN denotes TNF
T389 87-94 JJ denotes soluble
T388 84-86 IN denotes by
T387 78-83 NN denotes TNF-α
T386 75-77 IN denotes of
T385 60-74 NN denotes Neutralization
T384 57-58 -RRB- denotes )
T383 50-57 NN denotes antigen
T382 42-49 NN denotes barrier
T381 30-41 JJ denotes endothelial
T380 27-29 DT denotes an
T379 26-27 -LRB- denotes (
T378 15-25 NN denotes expression
T377 8-14 NN denotes SMI-71
T376 5-7 IN denotes by
R207 T378 T376 arg2Of expression,by
R208 T378 T377 arg1Of expression,SMI-71
R209 T378 T379 arg1Of expression,(
R210 T383 T379 arg2Of antigen,(
R211 T383 T380 arg1Of antigen,an
R212 T383 T381 arg1Of antigen,endothelial
R213 T383 T382 arg1Of antigen,barrier
R214 T384 T379 arg3Of ),(
R215 T385 T386 arg1Of Neutralization,of
R216 T385 T388 arg1Of Neutralization,by
R217 T385 T397 arg1Of Neutralization,attenuated
R218 T387 T386 arg2Of TNF-α,of
R219 T392 T389 arg1Of receptor,soluble
R220 T392 T390 arg1Of receptor,TNF
R221 T392 T391 arg1Of receptor,p55
R222 T392 T393 arg1Of receptor,(
R223 T394 T393 arg2Of sTNFp55R,(
R224 T395 T393 arg3Of ),(
R225 T396 T388 arg2Of infusion,by
R226 T396 T392 arg1Of infusion,receptor
R227 T397 T404 arg1Of attenuated,via
R228 T399 T400 arg1Of vasogenic,edema
R229 T399 T401 arg1Of vasogenic,and
R230 T402 T401 arg2Of neuronal,and
R231 T403 T397 arg2Of damages,attenuated
R232 T403 T398 arg1Of damages,SE-induced
R233 T403 T399 arg1Of damages,vasogenic
R234 T403 T402 arg1Of damages,neuronal
R235 T405 T404 arg2Of inhibition,via
R236 T405 T406 arg1Of inhibition,of
R237 T408 T406 arg2Of phosphorylation,of
R238 T408 T407 arg1Of phosphorylation,p65-Thr435

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T154 78-83 Protein denotes TNF-α
T155 95-111 Protein denotes TNF p55 receptor
T156 114-121 Protein denotes TNFp55R
T157 209-212 Protein denotes p65

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T479 99-102 http://www.uniprot.org/uniprot/P01589 denotes p55
T476 78-83 http://www.uniprot.org/uniprot/P01375 denotes TNF-α
T460 209-212 http://www.uniprot.org/uniprot/Q04206 denotes p65
T464 209-212 http://www.uniprot.org/uniprot/P21579 denotes p65
T471 78-81 http://www.uniprot.org/uniprot/P01375 denotes TNF
T472 95-98 http://www.uniprot.org/uniprot/P01375 denotes TNF

GO-BP

Id Subject Object Predicate Lexical cue
T171 220-235 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

simple1

Id Subject Object Predicate Lexical cue
T197 209-212 Protein denotes p65
T196 114-121 Protein denotes TNFp55R
T195 95-111 Protein denotes TNF p55 receptor
T194 78-83 Protein denotes TNF-α

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T918 78-83 Protein denotes TNF-α
T919 95-111 Protein denotes TNF p55 receptor
T920 114-121 Protein denotes TNFp55R
T921 209-212 Protein denotes p65
T929 220-235 Phosphorylation denotes phosphorylation
T930 195-205 Negative_regulation denotes inhibition
T931 60-74 Negative_regulation denotes Neutralization
R649 T918 T931 themeOf TNF-α,Neutralization
R650 T921 T929 themeOf p65,phosphorylation
R652 T929 T930 themeOf phosphorylation,inhibition

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T762 209-212 Protein denotes p65
T761 114-121 Protein denotes TNFp55R
T760 95-111 Protein denotes TNF p55 receptor
T759 78-83 Protein denotes TNF-α
T773 195-205 Negative_regulation denotes inhibition
T772 220-235 Phosphorylation denotes phosphorylation
T771 60-74 Negative_regulation denotes Neutralization
R558 T759 T771 themeOf TNF-α,Neutralization
R559 T762 T772 themeOf p65,phosphorylation
R565 T772 T773 themeOf phosphorylation,inhibition

DLUT931

Id Subject Object Predicate Lexical cue
T817 195-205 Negative_regulation denotes inhibition
T816 220-235 Phosphorylation denotes phosphorylation
T801 78-83 Protein denotes TNF-α
T802 95-111 Protein denotes TNF p55 receptor
T803 114-121 Protein denotes TNFp55R
T804 209-212 Protein denotes p65
T814 60-74 Negative_regulation denotes Neutralization
T815 123-131 Positive_regulation denotes infusion
R566 T816 T817 themeOf phosphorylation,inhibition
R627 T801 T814 themeOf TNF-α,Neutralization
R628 T802 T815 themeOf TNF p55 receptor,infusion
R629 T804 T816 themeOf p65,phosphorylation

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T980 50-57 Entity denotes antigen
T972 75-83 Protein denotes of TNF-α
T936 206-219 Entity denotes of p65-Thr435
T932 84-122 Protein denotes by soluble TNF p55 receptor (sTNFp55R)
T947 143-145 Entity denotes SE
T948 206-219 Protein denotes of p65-Thr435
T952 123-131 Entity denotes infusion

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T696 220-235 NN denotes phosphorylation
T695 209-219 NN denotes p65-Thr435
T694 206-208 IN denotes of
T693 195-205 NN denotes inhibition
T692 191-194 IN denotes via
T691 183-190 NNS denotes damages
T690 174-182 JJ denotes neuronal
T689 170-173 CC denotes and
T688 164-169 NN denotes edema
T687 154-163 JJ denotes vasogenic
T686 143-153 JJ denotes SE-induced
T685 132-142 VBD denotes attenuated
T684 123-131 NN denotes infusion
T683 121-122 -RRB- denotes )
T682 113-121 JJ denotes sTNFp55R
T681 112-113 -LRB- denotes (
T680 103-111 NN denotes receptor
T679 99-102 NN denotes p55
T678 95-98 NNP denotes TNF
T677 87-94 JJ denotes soluble
T676 84-86 IN denotes by
T675 78-83 JJ denotes TNF-α
T674 75-77 IN denotes of
T673 60-74 NN denotes Neutralization
T672 58-59 . denotes .
T671 57-58 -RRB- denotes )
T670 50-57 NN denotes antigen
T669 42-49 NN denotes barrier
T668 30-41 JJ denotes endothelial
T667 27-29 DT denotes an
T666 26-27 -LRB- denotes (
T665 15-25 NN denotes expression
T664 8-14 NNP denotes SMI-71
T663 5-7 IN denotes by
R470 T664 T665 compound SMI-71,expression
R471 T665 T663 pobj expression,by
R472 T666 T665 punct (,expression
R473 T667 T670 det an,antigen
R474 T668 T670 amod endothelial,antigen
R475 T669 T670 compound barrier,antigen
R476 T670 T665 appos antigen,expression
R477 T671 T665 punct ),expression
R479 T673 T685 nsubj Neutralization,attenuated
R480 T674 T673 prep of,Neutralization
R481 T675 T674 pobj TNF-α,of
R482 T676 T673 prep by,Neutralization
R483 T677 T680 amod soluble,receptor
R484 T678 T680 nmod TNF,receptor
R485 T679 T680 compound p55,receptor
R486 T680 T684 nmod receptor,infusion
R487 T681 T682 punct (,sTNFp55R
R488 T682 T680 appos sTNFp55R,receptor
R489 T683 T680 punct ),receptor
R490 T684 T676 pobj infusion,by
R491 T685 T685 ROOT attenuated,attenuated
R492 T686 T688 nmod SE-induced,edema
R493 T687 T688 amod vasogenic,edema
R494 T688 T685 dobj edema,attenuated
R495 T689 T688 cc and,edema
R496 T690 T691 amod neuronal,damages
R497 T691 T688 conj damages,edema
R498 T692 T685 prep via,attenuated
R499 T693 T692 pobj inhibition,via
R500 T694 T693 prep of,inhibition
R501 T695 T696 compound p65-Thr435,phosphorylation
R502 T696 T694 pobj phosphorylation,of

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T869 195-205 Negative_regulation denotes inhibition
T868 195-205 Negative_regulation denotes inhibition
T867 220-235 Phosphorylation denotes phosphorylation
T866 220-235 Phosphorylation denotes phosphorylation
T865 60-74 Negative_regulation denotes Neutralization
T864 213-219 Protein denotes Thr435
T863 209-212 Protein denotes p65
T862 113-121 Protein denotes sTNFp55R
T861 95-111 Protein denotes TNF p55 receptor
T860 78-83 Protein denotes TNF-α
R576 T866 T868 themeOf phosphorylation,inhibition
R577 T867 T869 themeOf phosphorylation,inhibition
R578 T868 T865 Cause inhibition,Neutralization
R579 T869 T865 Cause inhibition,Neutralization
R573 T860 T865 themeOf TNF-α,Neutralization
R574 T863 T866 themeOf p65,phosphorylation
R575 T864 T867 themeOf Thr435,phosphorylation

testone

Id Subject Object Predicate Lexical cue
T26 78-83 Protein denotes TNF-α
T27 95-111 Protein denotes TNF p55 receptor
T28 114-121 Protein denotes TNFp55R
T29 209-212 Protein denotes p65
T43 15-25 Gene_expression denotes expression
T44 60-74 Negative_regulation denotes Neutralization
T45 195-205 Negative_regulation denotes inhibition
T46 220-235 Phosphorylation denotes phosphorylation
R6 T26 T44 themeOf TNF-α,Neutralization
R7 T27 T44 causeOf TNF p55 receptor,Neutralization
R8 T29 T46 themeOf p65,phosphorylation
R14 T46 T45 themeOf phosphorylation,inhibition

test3

Id Subject Object Predicate Lexical cue
T88 220-235 Phosphorylation denotes phosphorylation
T87 209-212 Protein denotes p65
T86 195-205 Negative_regulation denotes inhibition
T85 113-121 Protein denotes sTNFp55R
T84 95-111 Protein denotes TNF p55 receptor
T83 78-83 Protein denotes TNF-α
T82 60-74 Negative_regulation denotes Neutralization
T81 15-25 Gene_expression denotes expression
T58 78-83 Protein denotes TNF-α
T59 95-111 Protein denotes TNF p55 receptor
T60 114-121 Protein denotes TNFp55R
T61 209-212 Protein denotes p65
R27 T84 T82 causeOf TNF p55 receptor,Neutralization
R28 T85 T84 equivalentTo sTNFp55R,TNF p55 receptor
R29 T87 T88 themeOf p65,phosphorylation
R30 T88 T86 themeOf phosphorylation,inhibition
R26 T83 T82 themeOf TNF-α,Neutralization