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PMC:3291650 / 816-1121 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T21 176-180 Protein denotes IRF3
T16 176-180 Protein denotes IRF3

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T181 2-5 DT denotes the
T221 276-280 NN denotes type
T220 272-275 CC denotes and
T219 261-271 NN denotes chemokines
T218 259-260 -COMMA- denotes ,
T217 250-259 NN denotes cytokines
T216 234-249 JJ denotes proinflammatory
T215 231-233 IN denotes of
T214 220-230 NN denotes production
T213 210-219 VB denotes increased
T212 205-209 IN denotes with
T211 193-204 JJ denotes concomitant
T210 191-192 -COMMA- denotes ,
T209 181-191 NN denotes activation
T208 176-180 NN denotes IRF3
T207 172-175 CC denotes and
T206 166-171 NN denotes NF-κB
T205 157-165 VB denotes enhanced
T204 154-156 IN denotes by
T203 142-153 VB denotes illustrated
T202 139-141 IN denotes as
T201 137-138 -COMMA- denotes ,
T200 128-137 NN denotes infection
T199 124-127 NN denotes IAV
T198 120-123 CC denotes and
T197 116-119 NN denotes RNA
T196 107-115 JJ denotes stranded
T195 100-106 VB denotes double
T194 97-99 TO denotes to
T193 81-96 JJ denotes hyperresponsive
T192 76-80 VB denotes were
T191 64-75 NN denotes macrophages
T190 54-63 JJ denotes deficient
T189 50-53 NN denotes A20
T188 39-48 NN denotes infection
T187 35-38 NN denotes IAV
T186 32-34 TO denotes to
T185 26-31 NN denotes cells
T184 18-25 JJ denotes myeloid
T183 15-17 IN denotes of
T182 6-14 NN denotes response
T225 298-302 FW denotes vivo
T224 295-297 FW denotes In
T223 283-293 NN denotes interferon
T222 281-282 CD denotes I
R113 T182 T181 arg1Of response,the
R114 T182 T183 arg1Of response,of
R115 T182 T186 arg1Of response,to
R116 T185 T183 arg2Of cells,of
R117 T185 T184 arg1Of cells,myeloid
R118 T188 T186 arg2Of infection,to
R119 T188 T187 arg1Of infection,IAV
R120 T191 T189 arg1Of macrophages,A20
R121 T191 T190 arg1Of macrophages,deficient
R122 T191 T192 arg1Of macrophages,were
R123 T191 T193 arg1Of macrophages,hyperresponsive
R124 T191 T195 arg1Of macrophages,double
R125 T192 T201 arg1Of were,","
R126 T192 T202 arg1Of were,as
R127 T193 T192 arg2Of hyperresponsive,were
R128 T195 T193 arg2Of double,hyperresponsive
R129 T195 T194 arg1Of double,to
R130 T197 T198 arg1Of RNA,and
R131 T199 T198 arg2Of IAV,and
R132 T200 T195 arg2Of infection,double
R133 T200 T196 arg1Of infection,stranded
R134 T200 T197 arg1Of infection,RNA
R135 T200 T199 arg1Of infection,IAV
R136 T203 T202 arg2Of illustrated,as
R137 T206 T205 arg2Of NF-κB,enhanced
R138 T206 T207 arg1Of NF-κB,and
R139 T207 T203 arg1Of and,illustrated
R140 T207 T204 arg2Of and,by
R141 T207 T210 arg1Of and,","
R142 T207 T211 arg1Of and,concomitant
R143 T209 T207 arg2Of activation,and
R144 T209 T208 arg1Of activation,IRF3
R145 T211 T212 arg1Of concomitant,with
R146 T214 T212 arg2Of production,with
R147 T214 T213 arg2Of production,increased
R148 T214 T215 arg1Of production,of
R149 T217 T216 arg1Of cytokines,proinflammatory
R150 T217 T218 arg1Of cytokines,","
R151 T218 T220 arg1Of ",",and
R152 T219 T218 arg2Of chemokines,","
R153 T220 T215 arg2Of and,of
R154 T223 T220 arg2Of interferon,and
R155 T223 T221 arg1Of interferon,type
R156 T223 T222 arg1Of interferon,I
R157 T225 T224 arg1Of vivo,In

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T43 176-180 Protein denotes IRF3

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T541 176-180 http://www.uniprot.org/uniprot/Q14653 denotes IRF3
T538 50-53 http://www.uniprot.org/uniprot/P21580 denotes A20

sentences

Id Subject Object Predicate Lexical cue
T29 50-294 Sentence denotes A20 deficient macrophages were hyperresponsive to double stranded RNA and IAV infection, as illustrated by enhanced NF-κB and IRF3 activation, concomitant with increased production of proinflammatory cytokines, chemokines and type I interferon.
T8 50-294 Sentence denotes A20 deficient macrophages were hyperresponsive to double stranded RNA and IAV infection, as illustrated by enhanced NF-κB and IRF3 activation, concomitant with increased production of proinflammatory cytokines, chemokines and type I interferon.

simple1

Id Subject Object Predicate Lexical cue
T68 176-180 Protein denotes IRF3

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T610 176-180 Protein denotes IRF3
T613 181-191 Positive_regulation denotes activation
T614 157-165 Positive_regulation denotes enhanced
R508 T610 T613 themeOf IRF3,activation
R509 T613 T614 themeOf activation,enhanced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T548 181-191 Positive_regulation denotes activation
T545 176-180 Protein denotes IRF3
R499 T545 T548 themeOf IRF3,activation

DLUT931

Id Subject Object Predicate Lexical cue
T552 176-180 Protein denotes IRF3
T555 181-191 Positive_regulation denotes activation
T556 157-165 Positive_regulation denotes enhanced
R503 T552 T555 themeOf IRF3,activation
R504 T555 T556 themeOf activation,enhanced

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T654 176-293 Positive_regulation denotes IRF3 activation, concomitant with increased production of proinflammatory cytokines, chemokines and type I interferon
T652 157-171 Positive_regulation denotes enhanced NF-κB
T648 210-293 Positive_regulation denotes increased production of proinflammatory cytokines, chemokines and type I interferon
T646 176-180 Protein denotes IRF3
T630 261-271 Protein denotes chemokines
T618 18-31 Entity denotes myeloid cells
T619 157-171 Protein denotes enhanced NF-κB
T625 50-53 Protein denotes A20
T636 234-259 Protein denotes proinflammatory cytokines
T639 50-75 Entity denotes A20 deficient macrophages
R512 T619 T652 themeOf enhanced NF-κB,enhanced NF-κB
R481 T646 T654 themeOf IRF3,"IRF3 activation, concomitant with increased production of proinflammatory cytokines, chemokines and type I interferon"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T461 298-302 NN denotes vivo
T460 295-297 IN denotes In
T459 293-294 . denotes .
T458 283-293 VBP denotes interferon
T457 281-282 PRP denotes I
T456 276-280 NN denotes type
T455 272-275 CC denotes and
T454 261-271 NNS denotes chemokines
T453 259-260 , denotes ,
T452 250-259 NNS denotes cytokines
T451 234-249 JJ denotes proinflammatory
T450 231-233 IN denotes of
T449 220-230 NN denotes production
T448 210-219 JJ denotes increased
T447 205-209 IN denotes with
T446 193-204 NN denotes concomitant
T445 191-192 , denotes ,
T444 181-191 NN denotes activation
T443 176-180 JJ denotes IRF3
T442 172-175 CC denotes and
T441 166-171 NN denotes NF-κB
T440 157-165 JJ denotes enhanced
T439 154-156 IN denotes by
T438 142-153 VBN denotes illustrated
T437 139-141 IN denotes as
T436 137-138 , denotes ,
T435 128-137 NN denotes infection
T434 124-127 NNP denotes IAV
T433 120-123 CC denotes and
T432 116-119 NNP denotes RNA
T431 107-115 VBN denotes stranded
T430 100-106 VB denotes double
T429 97-99 TO denotes to
T428 81-96 JJ denotes hyperresponsive
T427 76-80 VBD denotes were
T426 64-75 NNS denotes macrophages
T425 54-63 JJ denotes deficient
T424 50-53 CD denotes A20
T423 48-49 . denotes .
T422 39-48 NN denotes infection
T421 35-38 NNP denotes IAV
T420 32-34 TO denotes to
T419 26-31 NNS denotes cells
T418 18-25 JJ denotes myeloid
T417 15-17 IN denotes of
T416 6-14 NN denotes response
T415 2-5 DT denotes the
R335 T415 T416 det the,response
R337 T417 T416 prep of,response
R338 T418 T419 amod myeloid,cells
R339 T419 T417 pobj cells,of
R340 T420 T416 prep to,response
R341 T421 T422 compound IAV,infection
R342 T422 T420 pobj infection,to
R344 T424 T426 nummod A20,macrophages
R345 T425 T426 amod deficient,macrophages
R346 T426 T427 nsubj macrophages,were
R347 T427 T427 ROOT were,were
R348 T428 T427 acomp hyperresponsive,were
R349 T429 T430 aux to,double
R350 T430 T428 xcomp double,hyperresponsive
R351 T431 T432 amod stranded,RNA
R352 T432 T430 dobj RNA,double
R353 T433 T432 cc and,RNA
R354 T434 T435 compound IAV,infection
R355 T435 T432 conj infection,RNA
R356 T436 T427 punct ",",were
R357 T437 T438 mark as,illustrated
R358 T438 T427 advcl illustrated,were
R359 T439 T438 agent by,illustrated
R360 T440 T441 amod enhanced,NF-κB
R361 T441 T439 pobj NF-κB,by
R362 T442 T441 cc and,NF-κB
R363 T443 T444 amod IRF3,activation
R364 T444 T441 conj activation,NF-κB
R365 T445 T444 punct ",",activation
R366 T446 T444 conj concomitant,activation
R367 T447 T441 prep with,NF-κB
R368 T448 T449 amod increased,production
R369 T449 T447 pobj production,with
R370 T450 T449 prep of,production
R371 T451 T452 amod proinflammatory,cytokines
R372 T452 T450 pobj cytokines,of
R373 T453 T452 punct ",",cytokines
R374 T454 T452 conj chemokines,cytokines
R375 T455 T454 cc and,chemokines
R376 T456 T454 conj type,chemokines
R377 T457 T458 nsubj I,interferon
R378 T458 T452 relcl interferon,cytokines
R379 T459 T427 punct .,were
R381 T461 T460 pobj vivo,In

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T581 210-219 Positive_regulation denotes increased
T580 157-165 Positive_regulation denotes enhanced
T579 157-165 Positive_regulation denotes enhanced
T578 220-230 Gene_expression denotes production
T577 181-191 Positive_regulation denotes activation
T576 181-191 Positive_regulation denotes activation
T575 276-293 Protein denotes type I interferon
T574 176-180 Protein denotes IRF3
T573 166-171 Protein denotes NF-κB
R461 T573 T576 themeOf NF-κB,activation
R462 T574 T577 themeOf IRF3,activation
R463 T575 T578 themeOf type I interferon,production
R464 T576 T579 themeOf activation,enhanced
R465 T577 T580 themeOf activation,enhanced
R466 T578 T581 themeOf production,increased

testone

Id Subject Object Predicate Lexical cue
T11 54-63 Negative_regulation denotes deficient
T8 176-180 Protein denotes IRF3