> top > docs > PMC:3291650 > spans > 6459-6706 > annotations

PMC:3291650 / 6459-6706 JSONTXT

Annnotations TAB JSON ListView MergeView

test3

Id Subject Object Predicate Lexical cue
T889 143-146 Protein denotes RLR
T888 134-142 Regulation denotes regulate
T887 71-75 Protein denotes CYLD
T886 60-64 Protein denotes DUBA
T824 143-146 Protein denotes RLR
T823 71-75 Protein denotes CYLD
T822 60-64 Protein denotes DUBA

2_test

Id Subject Object Predicate Lexical cue
22396652-17991829-98461828 66-68 17991829 denotes 28
22396652-18467330-98461829 77-79 18467330 denotes 29
22396652-18636086-98461830 83-85 18636086 denotes 30
22396652-19996094-98461831 100-102 19996094 denotes 31

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1999 83-85 CD denotes 30
T2023 237-246 NN denotes molecules
T2022 227-236 VB denotes signaling
T2021 219-226 JJ denotes several
T2020 214-218 IN denotes from
T2019 207-213 NN denotes chains
T2018 193-206 NN denotes polyubiquitin
T2017 182-192 JJ denotes K63-linked
T2016 173-181 VB denotes removing
T2015 160-172 RB denotes specifically
T2014 157-159 IN denotes by
T2013 147-156 NN denotes signaling
T2012 143-146 NN denotes RLR
T2011 134-142 VB denotes regulate
T2010 123-133 RB denotes negatively
T2009 120-122 TO denotes to
T2008 114-119 VB denotes shown
T2007 109-113 VB denotes been
T2006 104-108 VB denotes have
T2005 102-103 -RRB- denotes ]
T2004 100-102 CD denotes 31
T2003 99-100 -LRB- denotes [
T2002 91-98 NN denotes OTUB1/2
T2001 87-90 CC denotes and
T2000 85-86 -RRB- denotes ]
T1998 82-83 -LRB- denotes [
T1997 80-81 -COMMA- denotes ,
T1996 79-80 -RRB- denotes ]
T1995 77-79 CD denotes 29
T1994 76-77 -LRB- denotes [
T1993 71-75 NN denotes CYLD
T1992 69-70 -COMMA- denotes ,
T1991 68-69 -RRB- denotes ]
T1990 66-68 CD denotes 28
T1989 65-66 -LRB- denotes [
T1988 60-64 NNP denotes DUBA
T1987 57-59 IN denotes as
T1986 52-56 JJ denotes such
T1985 50-51 -COMMA- denotes ,
T1984 49-50 -RRB- denotes )
T1983 45-49 NN denotes DUBs
T1982 44-45 -LRB- denotes (
T1981 36-43 NN denotes enzymes
T1980 19-35 VB denotes deubiquitinating
T1979 17-18 -COMMA- denotes ,
T1978 13-17 NN denotes hand
T1977 7-12 JJ denotes other
T1976 3-6 DT denotes the
T1975 0-2 IN denotes On
R1204 T1978 T1975 arg2Of hand,On
R1205 T1978 T1976 arg1Of hand,the
R1206 T1978 T1977 arg1Of hand,other
R1207 T1980 T1998 arg1Of deubiquitinating,[
R1208 T1980 T2001 arg1Of deubiquitinating,and
R1209 T1981 T1980 arg2Of enzymes,deubiquitinating
R1210 T1981 T1982 arg1Of enzymes,(
R1211 T1981 T1985 arg1Of enzymes,","
R1212 T1981 T1987 arg1Of enzymes,as
R1213 T1981 T1997 arg1Of enzymes,","
R1215 T1983 T1982 arg2Of DUBs,(
R1217 T1984 T1982 arg3Of ),(
R1221 T1987 T1986 arg1Of as,such
R1222 T1988 T1989 arg1Of DUBA,[
R1223 T1988 T1992 arg1Of DUBA,","
R1224 T1990 T1989 arg2Of 28,[
R1225 T1991 T1989 arg3Of ],[
R1226 T1992 T1987 arg2Of ",",as
R1227 T1993 T1992 arg2Of CYLD,","
R1228 T1993 T1994 arg1Of CYLD,[
R1229 T1995 T1994 arg2Of 29,[
R1231 T1996 T1994 arg3Of ],[
R1233 T1999 T1998 arg2Of 30,[
R1234 T2000 T1998 arg3Of ],[
R1235 T2001 T2006 arg1Of and,have
R1236 T2001 T2007 arg1Of and,been
R1237 T2001 T2008 arg2Of and,shown
R1238 T2001 T2011 arg1Of and,regulate
R1239 T2002 T2001 arg2Of OTUB1/2,and
R1240 T2002 T2003 arg1Of OTUB1/2,[
R1241 T2004 T2003 arg2Of 31,[
R1243 T2005 T2003 arg3Of ],[
R1247 T2008 T1975 arg1Of shown,On
R1248 T2008 T1979 arg1Of shown,","
R1249 T2008 T2006 arg2Of shown,have
R1251 T2008 T2007 arg2Of shown,been
R1254 T2011 T2008 arg3Of regulate,shown
R1255 T2011 T2009 arg1Of regulate,to
R1256 T2011 T2010 arg1Of regulate,negatively
R1257 T2011 T2014 arg1Of regulate,by
R1258 T2013 T2011 arg2Of signaling,regulate
R1259 T2013 T2012 arg1Of signaling,RLR
R1263 T2016 T2014 arg2Of removing,by
R1264 T2016 T2015 arg1Of removing,specifically
R1265 T2016 T2020 arg1Of removing,from
R1267 T2019 T2016 arg2Of chains,removing
R1268 T2019 T2017 arg1Of chains,K63-linked
R1269 T2019 T2018 arg1Of chains,polyubiquitin
R1271 T2023 T2020 arg2Of molecules,from
R1272 T2023 T2021 arg1Of molecules,several
R1273 T2023 T2022 arg1Of molecules,signaling

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T1070 143-146 Protein denotes RLR
T1069 71-75 Protein denotes CYLD
T1068 60-64 Protein denotes DUBA

GO-BP

Id Subject Object Predicate Lexical cue
T1127 193-206 http://purl.obolibrary.org/obo/GO_0000209 denotes polyubiquitin
T1126 19-43 http://purl.obolibrary.org/obo/GO_0004843 denotes deubiquitinating enzymes
T1092 227-236 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T1091 147-156 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling

GO-MF

Id Subject Object Predicate Lexical cue
T1181 19-43 http://purl.obolibrary.org/obo/GO_0004843 denotes deubiquitinating enzymes

sentences

Id Subject Object Predicate Lexical cue
T931 0-247 Sentence denotes On the other hand, deubiquitinating enzymes (DUBs), such as DUBA [28], CYLD [29], [30] and OTUB1/2 [31] have been shown to negatively regulate RLR signaling by specifically removing K63-linked polyubiquitin chains from several signaling molecules.
T42 0-247 Sentence denotes On the other hand, deubiquitinating enzymes (DUBs), such as DUBA [28], CYLD [29], [30] and OTUB1/2 [31] have been shown to negatively regulate RLR signaling by specifically removing K63-linked polyubiquitin chains from several signaling molecules.

simple1

Id Subject Object Predicate Lexical cue
T1323 143-146 Protein denotes RLR
T1322 71-75 Protein denotes CYLD
T1321 60-64 Protein denotes DUBA

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T4134 143-146 Protein denotes RLR
T4133 71-75 Protein denotes CYLD
T4132 60-64 Protein denotes DUBA

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T3723 143-146 Protein denotes RLR
T3722 71-75 Protein denotes CYLD
T3721 60-64 Protein denotes DUBA

DLUT931

Id Subject Object Predicate Lexical cue
T3818 134-142 Negative_regulation denotes regulate
T3791 143-146 Protein denotes RLR
T3790 71-75 Protein denotes CYLD
T3789 60-64 Protein denotes DUBA
R2962 T3789 T3818 causeOf DUBA,regulate
R2963 T3791 T3818 themeOf RLR,regulate

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T4358 143-156 Positive_regulation denotes RLR signaling
T4357 60-218 Regulation denotes DUBA [28], CYLD [29], [30] and OTUB1/2 [31] have been shown to negatively regulate RLR signaling by specifically removing K63-linked polyubiquitin chains from
T4340 71-86 Protein denotes CYLD [29], [30]
T4332 60-69 Protein denotes DUBA [28]
T4313 237-246 Entity denotes molecules
T4299 45-49 Protein denotes DUBs
T4285 182-192 Entity denotes K63-linked
T4283 193-206 Protein denotes polyubiquitin
T4263 143-146 Protein denotes RLR
T4205 91-103 Protein denotes OTUB1/2 [31]
R3111 T4263 T4358 causeOf RLR,RLR signaling
R3112 T4358 T4357 themeOf RLR signaling,"DUBA [28], CYLD [29], [30] and OTUB1/2 [31] have been shown to negatively regulate RLR signaling by specifically removing K63-linked polyubiquitin chains from"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3181 246-247 . denotes .
T3180 237-246 NNS denotes molecules
T3179 227-236 VBG denotes signaling
T3178 219-226 JJ denotes several
T3177 214-218 IN denotes from
T3176 207-213 NNS denotes chains
T3175 193-206 NN denotes polyubiquitin
T3174 182-192 JJ denotes K63-linked
T3173 173-181 VBG denotes removing
T3172 160-172 RB denotes specifically
T3171 157-159 IN denotes by
T3170 147-156 VBG denotes signaling
T3169 143-146 NNP denotes RLR
T3168 134-142 VB denotes regulate
T3167 123-133 RB denotes negatively
T3166 120-122 TO denotes to
T3165 114-119 VBN denotes shown
T3164 109-113 VBN denotes been
T3163 104-108 VBP denotes have
T3162 102-103 NNP denotes ]
T3161 100-102 CD denotes 31
T3160 99-100 NNP denotes [
T3159 91-98 NNP denotes OTUB1/2
T3158 87-90 CC denotes and
T3157 85-86 NNP denotes ]
T3156 83-85 CD denotes 30
T3155 82-83 NNP denotes [
T3154 80-81 , denotes ,
T3153 79-80 NNP denotes ]
T3152 77-79 CD denotes 29
T3151 76-77 NNP denotes [
T3150 71-75 NNP denotes CYLD
T3149 69-70 , denotes ,
T3148 68-69 NNP denotes ]
T3147 66-68 CD denotes 28
T3146 65-66 NNP denotes [
T3145 60-64 NNP denotes DUBA
T3144 57-59 IN denotes as
T3143 52-56 JJ denotes such
T3142 50-51 , denotes ,
T3141 49-50 -RRB- denotes )
T3140 45-49 NNS denotes DUBs
T3139 44-45 -LRB- denotes (
T3138 36-43 NNS denotes enzymes
T3137 19-35 VBG denotes deubiquitinating
T3136 17-18 , denotes ,
T3135 13-17 NN denotes hand
T3134 7-12 JJ denotes other
T3133 3-6 DT denotes the
T3132 0-2 IN denotes On
R2329 T3132 T3165 prep On,shown
R2330 T3133 T3135 det the,hand
R2332 T3134 T3135 amod other,hand
R2333 T3135 T3132 pobj hand,On
R2334 T3136 T3165 punct ",",shown
R2335 T3137 T3165 advcl deubiquitinating,shown
R2336 T3138 T3137 dobj enzymes,deubiquitinating
R2337 T3139 T3138 punct (,enzymes
R2339 T3140 T3138 appos DUBs,enzymes
R2340 T3141 T3138 punct ),enzymes
R2341 T3142 T3138 punct ",",enzymes
R2343 T3143 T3144 amod such,as
R2344 T3144 T3138 prep as,enzymes
R2345 T3145 T3146 compound DUBA,[
R2347 T3146 T3144 pobj [,as
R2348 T3147 T3148 nummod 28,]
R2350 T3148 T3146 conj ],[
R2351 T3149 T3148 punct ",",]
R2352 T3150 T3151 compound CYLD,[
R2354 T3151 T3148 conj [,]
R2355 T3152 T3153 compound 29,]
R2356 T3153 T3151 conj ],[
R2358 T3154 T3153 punct ",",]
R2359 T3155 T3153 conj [,]
R2360 T3156 T3157 nummod 30,]
R2362 T3157 T3153 conj ],]
R2363 T3158 T3157 cc and,]
R2364 T3159 T3160 compound OTUB1/2,[
R2366 T3160 T3157 conj [,]
R2367 T3161 T3162 nummod 31,]
R2368 T3162 T3157 conj ],]
R2370 T3163 T3165 aux have,shown
R2371 T3164 T3165 auxpass been,shown
R2372 T3165 T3165 ROOT shown,shown
R2374 T3166 T3168 aux to,regulate
R2375 T3167 T3168 advmod negatively,regulate
R2377 T3168 T3165 xcomp regulate,shown
R2378 T3169 T3168 dobj RLR,regulate
R2379 T3170 T3165 advcl signaling,shown
R2381 T3171 T3170 prep by,signaling
R2382 T3172 T3173 advmod specifically,removing
R2383 T3173 T3171 pcomp removing,by
R2384 T3174 T3176 amod K63-linked,chains
R2385 T3175 T3176 compound polyubiquitin,chains
R2386 T3176 T3173 dobj chains,removing
R2388 T3177 T3173 prep from,removing
R2389 T3178 T3180 amod several,molecules
R2390 T3179 T3180 amod signaling,molecules
R2392 T3180 T3177 pobj molecules,from
R2393 T3181 T3165 punct .,shown

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T3960 193-206 Protein denotes polyubiquitin

testone

Id Subject Object Predicate Lexical cue
T756 143-146 Protein denotes RLR
T755 71-75 Protein denotes CYLD
T754 60-64 Protein denotes DUBA