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PMC:3291650 / 35445-36071 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T16106 506-516 Gene_expression denotes expression
T16105 501-504 Protein denotes CD8
T16104 492-495 Protein denotes CD3
T16103 431-434 Protein denotes CD8
T16102 37-40 Protein denotes CD8
T16101 26-36 Gene_expression denotes expressing
T16100 12-15 Protein denotes GrB
T16099 0-10 Protein denotes Granzyme B
T16096 501-504 Protein denotes CD8
T16095 492-495 Protein denotes CD3
T16094 431-434 Protein denotes CD8
T16093 37-40 Protein denotes CD8
T16092 12-15 Protein denotes GrB
T16091 0-10 Protein denotes Granzyme B
R12121 T16099 T16101 themeOf Granzyme B,expressing
R12122 T16100 T16099 equivalentTo GrB,Granzyme B
R12123 T16104 T16106 themeOf CD3,expression
R12124 T16105 T16106 themeOf CD8,expression

2_test

Id Subject Object Predicate Lexical cue
22396652-21187318-98461893 156-158 21187318 denotes 86

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T16222 326-339 VB denotes permeabilized
T16221 322-325 CC denotes and
T16220 316-321 VB denotes fixed
T16219 314-315 -COMMA- denotes ,
T16218 307-314 VB denotes stained
T16217 302-306 VB denotes were
T16216 296-301 NNP denotes Cells
T16215 293-295 NN denotes A.
T16214 283-292 NNP denotes Brefeldin
T16213 277-282 NN denotes µg/ml
T16212 275-276 CD denotes 3
T16211 272-274 IN denotes of
T16210 263-271 NN denotes presence
T16209 259-262 DT denotes the
T16208 256-258 IN denotes in
T16207 251-255 NN denotes lung
T16206 247-250 DT denotes the
T16205 242-246 IN denotes from
T16204 233-241 VB denotes prepared
T16203 228-232 VB denotes were
T16202 216-227 NN denotes suspensions
T16201 211-215 NN denotes cell
T16200 204-210 JJ denotes single
T16199 200-203 CC denotes and
T16198 191-199 VB denotes isolated
T16197 186-190 VB denotes were
T16196 180-185 NN denotes lungs
T16195 176-179 CC denotes and
T16194 172-175 NN denotes BAL
T16193 170-171 -COMMA- denotes ,
T16192 165-170 RB denotes later
T16191 163-164 NN denotes h
T16190 161-162 CD denotes 6
T16189 158-159 -RRB- denotes ]
T16188 156-158 CD denotes 86
T16187 155-156 -LRB- denotes [
T16186 145-154 VB denotes described
T16185 134-144 RB denotes previously
T16184 131-133 IN denotes as
T16183 129-130 -RRB- denotes )
T16182 124-129 NN denotes Sigma
T16181 123-124 -LRB- denotes (
T16180 121-122 NN denotes A
T16179 111-120 NN denotes Brefeldin
T16178 108-110 NN denotes µg
T16177 105-107 CD denotes 50
T16176 100-104 IN denotes with
T16175 87-99 RB denotes intranasally
T16174 82-86 NN denotes mice
T16173 78-81 DT denotes the
T16172 69-77 VB denotes treating
T16171 66-68 IN denotes by
T16170 55-65 VB denotes determined
T16169 50-54 VB denotes were
T16168 44-49 NN denotes cells
T16167 42-43 NN denotes T
T16166 37-41 JJ denotes CD8+
T16165 26-36 VB denotes expressing
T16164 21-25 NN denotes IFNγ
T16163 17-20 CC denotes and
T16162 15-16 -RRB- denotes )
T16161 12-15 NN denotes GrB
T16160 11-12 -LRB- denotes (
T16159 9-10 NN denotes B
T16158 0-8 NN denotes Granzyme
T16269 620-625 NN denotes cells
T16268 615-619 JJ denotes dead
T16267 610-614 IN denotes from
T16266 605-609 JJ denotes live
T16265 592-604 VB denotes discriminate
T16264 589-591 TO denotes to
T16263 584-588 VB denotes used
T16262 580-583 VB denotes was
T16261 578-579 -RRB- denotes )
T16260 572-578 NNP denotes Probes
T16259 562-571 NNP denotes Molecular
T16258 561-562 -LRB- denotes (
T16257 557-560 NN denotes kit
T16256 551-556 NN denotes stain
T16255 546-550 NN denotes cell
T16254 541-545 JJ denotes dead
T16253 536-540 NN denotes aqua
T16252 528-535 JJ denotes fixable
T16251 518-527 JJ denotes Live/Dead
T16250 506-516 NN denotes expression
T16249 501-505 JJ denotes CD8+
T16248 497-500 CC denotes and
T16247 492-496 JJ denotes CD3+
T16246 485-491 JJ denotes CD62lo
T16245 482-484 IN denotes on
T16244 476-481 VB denotes based
T16243 466-475 NN denotes cytometry
T16242 461-465 NN denotes flow
T16241 458-460 IN denotes by
T16240 449-457 VB denotes analyzed
T16239 444-448 VB denotes were
T16238 438-443 NN denotes cells
T16237 436-437 NN denotes T
T16236 431-435 JJ denotes CD8+
T16235 421-430 VB denotes Activated
T16234 407-419 NN denotes instructions
T16233 404-406 POS denotes 's
T16232 392-404 NN denotes manufacturer
T16231 388-391 DT denotes the
T16230 385-387 TO denotes to
T16229 375-384 VB denotes according
T16228 373-374 -RRB- denotes )
T16227 362-373 NNP denotes Biosciences
T16226 359-361 NNP denotes BD
T16225 357-358 -COMMA- denotes ,
T16224 341-357 NN denotes Cytofix/Cytoperm
T16223 340-341 -LRB- denotes (
R12141 T16159 T16158 arg1Of B,Granzyme
R12142 T16159 T16160 arg1Of B,(
R12143 T16159 T16163 arg1Of B,and
R12144 T16161 T16160 arg2Of GrB,(
R12145 T16162 T16160 arg3Of ),(
R12146 T16163 T16169 arg1Of and,were
R12147 T16163 T16170 arg2Of and,determined
R12148 T16164 T16163 arg2Of IFNγ,and
R12149 T16164 T16165 arg1Of IFNγ,expressing
R12150 T16168 T16165 arg2Of cells,expressing
R12151 T16168 T16166 arg1Of cells,CD8+
R12152 T16168 T16167 arg1Of cells,T
R12153 T16170 T16169 arg2Of determined,were
R12154 T16170 T16171 arg1Of determined,by
R12155 T16172 T16171 arg2Of treating,by
R12156 T16172 T16175 arg1Of treating,intranasally
R12157 T16172 T16176 arg1Of treating,with
R12158 T16174 T16172 arg2Of mice,treating
R12159 T16174 T16173 arg1Of mice,the
R12160 T16180 T16176 arg2Of A,with
R12161 T16180 T16177 arg1Of A,50
R12162 T16180 T16178 arg1Of A,µg
R12163 T16180 T16179 arg1Of A,Brefeldin
R12164 T16180 T16181 arg1Of A,(
R12165 T16180 T16184 arg1Of A,as
R12166 T16182 T16181 arg2Of Sigma,(
R12167 T16183 T16181 arg3Of ),(
R12168 T16186 T16185 arg1Of described,previously
R12169 T16188 T16184 arg2Of 86,as
R12170 T16188 T16186 arg1Of 86,described
R12171 T16188 T16187 arg2Of 86,[
R12172 T16189 T16187 arg3Of ],[
R12173 T16191 T16190 arg1Of h,6
R12174 T16194 T16195 arg1Of BAL,and
R12175 T16195 T16197 arg1Of and,were
R12176 T16195 T16198 arg2Of and,isolated
R12177 T16195 T16217 arg1Of and,were
R12178 T16195 T16218 arg2Of and,stained
R12179 T16195 T16220 arg2Of and,fixed
R12180 T16195 T16222 arg2Of and,permeabilized
R12181 T16196 T16195 arg2Of lungs,and
R12182 T16198 T16197 arg2Of isolated,were
R12183 T16198 T16199 arg1Of isolated,and
R12184 T16199 T16191 arg1Of and,h
R12185 T16199 T16192 arg1Of and,later
R12186 T16199 T16193 arg1Of and,","
R12187 T16202 T16200 arg1Of suspensions,single
R12188 T16202 T16201 arg1Of suspensions,cell
R12189 T16202 T16203 arg1Of suspensions,were
R12190 T16202 T16204 arg2Of suspensions,prepared
R12191 T16204 T16203 arg2Of prepared,were
R12192 T16204 T16205 arg1Of prepared,from
R12193 T16204 T16208 arg1Of prepared,in
R12194 T16207 T16205 arg2Of lung,from
R12195 T16207 T16206 arg1Of lung,the
R12196 T16210 T16208 arg2Of presence,in
R12197 T16210 T16209 arg1Of presence,the
R12198 T16210 T16211 arg1Of presence,of
R12199 T16216 T16211 arg2Of Cells,of
R12200 T16216 T16212 arg1Of Cells,3
R12201 T16216 T16213 arg1Of Cells,µg/ml
R12202 T16216 T16214 arg1Of Cells,Brefeldin
R12203 T16216 T16215 arg1Of Cells,A.
R12204 T16218 T16219 arg1Of stained,","
R12205 T16219 T16221 arg1Of ",",and
R12206 T16220 T16219 arg2Of fixed,","
R12207 T16221 T16199 arg2Of and,and
R12208 T16221 T16203 modOf and,were
R12209 T16221 T16217 arg2Of and,were
R12210 T16221 T16223 arg1Of and,(
R12211 T16221 T16229 arg1Of and,according
R12212 T16222 T16221 arg2Of permeabilized,and
R12213 T16224 T16223 arg2Of Cytofix/Cytoperm,(
R12214 T16224 T16225 arg1Of Cytofix/Cytoperm,","
R12215 T16227 T16225 arg2Of Biosciences,","
R12216 T16227 T16226 arg1Of Biosciences,BD
R12217 T16228 T16223 arg3Of ),(
R12218 T16230 T16229 arg2Of to,according
R12219 T16232 T16231 arg1Of manufacturer,the
R12220 T16232 T16233 arg2Of manufacturer,'s
R12221 T16234 T16230 arg2Of instructions,to
R12222 T16234 T16233 arg1Of instructions,'s
R12223 T16238 T16235 arg2Of cells,Activated
R12224 T16238 T16236 arg1Of cells,CD8+
R12225 T16238 T16237 arg1Of cells,T
R12226 T16238 T16239 arg1Of cells,were
R12227 T16238 T16240 arg2Of cells,analyzed
R12228 T16240 T16239 arg2Of analyzed,were
R12229 T16243 T16240 arg1Of cytometry,analyzed
R12230 T16243 T16241 arg2Of cytometry,by
R12231 T16243 T16242 arg1Of cytometry,flow
R12232 T16243 T16244 arg2Of cytometry,based
R12233 T16244 T16245 arg1Of based,on
R12234 T16247 T16248 arg1Of CD3+,and
R12235 T16249 T16248 arg2Of CD8+,and
R12236 T16250 T16245 arg2Of expression,on
R12237 T16250 T16246 arg1Of expression,CD62lo
R12238 T16250 T16247 arg1Of expression,CD3+
R12239 T16250 T16249 arg1Of expression,CD8+
R12240 T16257 T16251 arg1Of kit,Live/Dead
R12241 T16257 T16252 arg1Of kit,fixable
R12242 T16257 T16253 arg1Of kit,aqua
R12243 T16257 T16254 arg1Of kit,dead
R12244 T16257 T16255 arg1Of kit,cell
R12245 T16257 T16256 arg1Of kit,stain
R12246 T16257 T16258 arg1Of kit,(
R12247 T16257 T16262 arg1Of kit,was
R12248 T16257 T16263 arg2Of kit,used
R12249 T16257 T16265 arg1Of kit,discriminate
R12250 T16257 T16266 arg1Of kit,live
R12251 T16260 T16258 arg2Of Probes,(
R12252 T16260 T16259 arg1Of Probes,Molecular
R12253 T16261 T16258 arg3Of ),(
R12254 T16263 T16262 arg2Of used,was
R12255 T16265 T16263 arg3Of discriminate,used
R12256 T16265 T16264 arg1Of discriminate,to
R12257 T16266 T16265 arg2Of live,discriminate
R12258 T16266 T16267 arg1Of live,from
R12259 T16269 T16267 arg2Of cells,from
R12260 T16269 T16268 arg1Of cells,dead

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T16132 501-504 Protein denotes CD8
T16131 492-495 Protein denotes CD3
T16130 431-434 Protein denotes CD8
T16129 37-40 Protein denotes CD8
T16128 12-15 Protein denotes GrB
T16127 0-10 Protein denotes Granzyme B

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T16416 492-495 http://www.uniprot.org/uniprot/P09693 denotes CD3
T16415 492-495 http://www.uniprot.org/uniprot/P07766 denotes CD3
T16414 492-495 http://www.uniprot.org/uniprot/P04234 denotes CD3
T16413 492-495 http://www.uniprot.org/uniprot/P20963 denotes CD3
T16412 501-504 http://www.uniprot.org/uniprot/P10966 denotes CD8
T16411 431-434 http://www.uniprot.org/uniprot/P10966 denotes CD8
T16410 37-40 http://www.uniprot.org/uniprot/P10966 denotes CD8
T16408 501-504 http://www.uniprot.org/uniprot/P01732 denotes CD8
T16407 431-434 http://www.uniprot.org/uniprot/P01732 denotes CD8
T16406 37-40 http://www.uniprot.org/uniprot/P01732 denotes CD8

UBERON-AE

Id Subject Object Predicate Lexical cue
T16108 251-255 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T16107 180-185 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lungs

GO-CC

Id Subject Object Predicate Lexical cue
T16137 620-625 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T16136 438-443 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T16135 44-49 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T16113 518-626 Sentence denotes Live/Dead fixable aqua dead cell stain kit (Molecular Probes) was used to discriminate live from dead cells.
T16112 421-517 Sentence denotes Activated CD8+ T cells were analyzed by flow cytometry based on CD62lo CD3+ and CD8+ expression.
T16111 161-420 Sentence denotes 6 h later, BAL and lungs were isolated and single cell suspensions were prepared from the lung in the presence of 3 µg/ml Brefeldin A. Cells were stained, fixed and permeabilized (Cytofix/Cytoperm, BD Biosciences) according to the manufacturer's instructions.
T16110 0-160 Sentence denotes Granzyme B (GrB) and IFNγ expressing CD8+ T cells were determined by treating the mice intranasally with 50 µg Brefeldin A (Sigma) as previously described [86].
T225 0-160 Sentence denotes Granzyme B (GrB) and IFNγ expressing CD8+ T cells were determined by treating the mice intranasally with 50 µg Brefeldin A (Sigma) as previously described [86].
T226 161-295 Sentence denotes 6 h later, BAL and lungs were isolated and single cell suspensions were prepared from the lung in the presence of 3 µg/ml Brefeldin A.
T227 296-420 Sentence denotes Cells were stained, fixed and permeabilized (Cytofix/Cytoperm, BD Biosciences) according to the manufacturer's instructions.
T228 421-517 Sentence denotes Activated CD8+ T cells were analyzed by flow cytometry based on CD62lo CD3+ and CD8+ expression.
T229 518-626 Sentence denotes Live/Dead fixable aqua dead cell stain kit (Molecular Probes) was used to discriminate live from dead cells.

simple1

Id Subject Object Predicate Lexical cue
T16145 501-504 Protein denotes CD8
T16144 492-495 Protein denotes CD3
T16143 431-434 Protein denotes CD8
T16142 37-40 Protein denotes CD8
T16141 12-15 Protein denotes GrB
T16140 0-10 Protein denotes Granzyme B

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T16502 506-516 Gene_expression denotes expression
T16501 26-36 Gene_expression denotes expressing
T16500 501-504 Protein denotes CD8
T16499 492-495 Protein denotes CD3
T16498 431-434 Protein denotes CD8
T16497 37-40 Protein denotes CD8
T16496 12-15 Protein denotes GrB
T16495 0-10 Protein denotes Granzyme B
R12418 T16495 T16501 themeOf Granzyme B,expressing
R12419 T16496 T16501 themeOf GrB,expressing
R12420 T16497 T16501 themeOf CD8,expressing
R12421 T16499 T16502 themeOf CD3,expression
R12422 T16500 T16502 themeOf CD8,expression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T16434 506-516 Gene_expression denotes expression
T16433 26-36 Gene_expression denotes expressing
T16432 501-504 Protein denotes CD8
T16431 492-495 Protein denotes CD3
T16430 431-434 Protein denotes CD8
T16429 37-40 Protein denotes CD8
T16428 12-15 Protein denotes GrB
T16427 0-10 Protein denotes Granzyme B
R12396 T16427 T16433 themeOf Granzyme B,expressing
R12397 T16428 T16433 themeOf GrB,expressing
R12398 T16431 T16434 themeOf CD3,expression

DLUT931

Id Subject Object Predicate Lexical cue
T16444 506-516 Gene_expression denotes expression
T16443 26-36 Gene_expression denotes expressing
T16442 501-504 Protein denotes CD8
T16441 492-495 Protein denotes CD3
T16440 431-434 Protein denotes CD8
T16439 37-40 Protein denotes CD8
T16438 12-15 Protein denotes GrB
T16437 0-10 Protein denotes Granzyme B
R12399 T16437 T16443 themeOf Granzyme B,expressing
R12400 T16438 T16443 themeOf GrB,expressing
R12401 T16441 T16444 themeOf CD3,expression
R12402 T16442 T16444 themeOf CD8,expression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T16523 69-99 Regulation denotes treating the mice intranasally
T16522 275-294 Entity denotes 3 µg/ml Brefeldin A
T16521 536-540 Entity denotes aqua
T16520 615-625 Entity denotes dead cells
T16519 518-550 Entity denotes Live/Dead fixable aqua dead cell
T16517 296-301 Entity denotes Cells
T16516 78-86 Protein denotes the mice
T16515 172-175 Protein denotes BAL
T16513 124-129 Protein denotes Sigma
T16512 431-443 Entity denotes CD8+ T cells
T16511 161-164 Entity denotes 6 h
T16509 12-15 Protein denotes GrB
T16508 21-25 Protein denotes IFNγ
T16507 21-49 Entity denotes IFNγ expressing CD8+ T cells
T16506 204-227 Entity denotes single cell suspensions
T16504 105-130 Entity denotes 50 µg Brefeldin A (Sigma)
T16503 0-8 Protein denotes Granzyme
R12423 T16516 T16523 themeOf the mice,treating the mice intranasally

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T16404 625-626 . denotes .
T16403 620-625 NNS denotes cells
T16402 615-619 JJ denotes dead
T16401 610-614 IN denotes from
T16400 605-609 JJ denotes live
T16399 592-604 JJ denotes discriminate
T16398 589-591 TO denotes to
T16397 584-588 VBN denotes used
T16396 580-583 VBD denotes was
T16395 578-579 -RRB- denotes )
T16394 572-578 NNS denotes Probes
T16393 562-571 JJ denotes Molecular
T16392 561-562 -LRB- denotes (
T16391 557-560 NN denotes kit
T16390 551-556 VB denotes stain
T16389 546-550 NN denotes cell
T16388 541-545 JJ denotes dead
T16387 536-540 NN denotes aqua
T16386 528-535 JJ denotes fixable
T16385 518-527 JJ denotes Live/Dead
T16384 516-517 . denotes .
T16383 506-516 NN denotes expression
T16382 504-505 VBP denotes +
T16381 501-504 NNP denotes CD8
T16380 497-500 CC denotes and
T16379 495-496 NNP denotes +
T16378 492-495 NNP denotes CD3
T16377 485-491 NNP denotes CD62lo
T16376 482-484 IN denotes on
T16375 476-481 VBN denotes based
T16374 466-475 NN denotes cytometry
T16373 461-465 NN denotes flow
T16372 458-460 IN denotes by
T16371 449-457 VBN denotes analyzed
T16370 444-448 VBD denotes were
T16369 438-443 NNS denotes cells
T16368 436-437 NNP denotes T
T16367 434-435 CD denotes +
T16366 431-434 CD denotes CD8
T16365 421-430 VBN denotes Activated
T16364 419-420 . denotes .
T16363 407-419 NNS denotes instructions
T16362 404-406 POS denotes 's
T16361 392-404 NN denotes manufacturer
T16360 388-391 DT denotes the
T16359 385-387 TO denotes to
T16358 375-384 VBG denotes according
T16357 373-374 -RRB- denotes )
T16356 362-373 NNP denotes Biosciences
T16355 359-361 NNP denotes BD
T16354 357-358 , denotes ,
T16353 341-357 NNP denotes Cytofix/Cytoperm
T16352 340-341 -LRB- denotes (
T16351 326-339 VBN denotes permeabilized
T16350 322-325 CC denotes and
T16349 316-321 VBN denotes fixed
T16348 314-315 , denotes ,
T16347 307-314 VBN denotes stained
T16346 302-306 VBD denotes were
T16345 296-301 NNP denotes Cells
T16344 293-295 NNP denotes A.
T16343 283-292 NNP denotes Brefeldin
T16342 280-282 NN denotes ml
T16341 279-280 NN denotes /
T16340 277-279 NN denotes µg
T16339 275-276 CD denotes 3
T16338 272-274 IN denotes of
T16337 263-271 NN denotes presence
T16336 259-262 DT denotes the
T16335 256-258 IN denotes in
T16334 251-255 NN denotes lung
T16333 247-250 DT denotes the
T16332 242-246 IN denotes from
T16331 233-241 VBN denotes prepared
T16330 228-232 VBD denotes were
T16329 216-227 NNS denotes suspensions
T16328 211-215 NN denotes cell
T16327 204-210 JJ denotes single
T16326 200-203 CC denotes and
T16325 191-199 VBN denotes isolated
T16324 186-190 VBD denotes were
T16323 180-185 NNS denotes lungs
T16322 176-179 CC denotes and
T16321 172-175 NNP denotes BAL
T16320 170-171 , denotes ,
T16319 165-170 RB denotes later
T16318 163-164 NN denotes h
T16317 161-162 CD denotes 6
T16316 159-160 . denotes .
T16315 158-159 NNP denotes ]
T16314 156-158 CD denotes 86
T16313 155-156 NNP denotes [
T16312 145-154 VBN denotes described
T16311 134-144 RB denotes previously
T16310 131-133 IN denotes as
T16309 129-130 -RRB- denotes )
T16308 124-129 NNP denotes Sigma
T16307 123-124 -LRB- denotes (
T16306 121-122 NNP denotes A
T16305 111-120 NNP denotes Brefeldin
T16304 108-110 NN denotes µg
T16303 105-107 CD denotes 50
T16302 100-104 IN denotes with
T16301 87-99 RB denotes intranasally
T16300 82-86 NNS denotes mice
T16299 78-81 DT denotes the
T16298 69-77 VBG denotes treating
T16297 66-68 IN denotes by
T16296 55-65 VBN denotes determined
T16295 50-54 VBD denotes were
T16294 44-49 NNS denotes cells
T16293 42-43 NNP denotes T
T16292 40-41 CD denotes +
T16291 37-40 CD denotes CD8
T16290 26-36 VBG denotes expressing
T16289 21-25 NNP denotes IFNγ
T16288 17-20 CC denotes and
T16287 15-16 -RRB- denotes )
T16286 12-15 NNP denotes GrB
T16285 11-12 -LRB- denotes (
T16284 9-10 NNP denotes B
T16283 0-8 NNP denotes Granzyme
R12274 T16283 T16284 compound Granzyme,B
R12275 T16284 T16290 nsubj B,expressing
R12276 T16285 T16284 punct (,B
R12277 T16286 T16284 appos GrB,B
R12278 T16287 T16284 punct ),B
R12279 T16288 T16284 cc and,B
R12280 T16289 T16284 conj IFNγ,B
R12281 T16290 T16296 csubjpass expressing,determined
R12282 T16291 T16294 nummod CD8,cells
R12283 T16292 T16294 nummod +,cells
R12284 T16293 T16294 compound T,cells
R12285 T16294 T16290 dobj cells,expressing
R12286 T16295 T16296 auxpass were,determined
R12287 T16296 T16296 ROOT determined,determined
R12288 T16297 T16296 prep by,determined
R12289 T16298 T16297 pcomp treating,by
R12290 T16299 T16300 det the,mice
R12291 T16300 T16298 dobj mice,treating
R12292 T16301 T16298 advmod intranasally,treating
R12293 T16302 T16298 prep with,treating
R12294 T16303 T16304 nummod 50,µg
R12295 T16304 T16306 compound µg,A
R12296 T16305 T16306 compound Brefeldin,A
R12297 T16306 T16302 pobj A,with
R12298 T16307 T16306 punct (,A
R12299 T16308 T16306 appos Sigma,A
R12300 T16309 T16306 punct ),A
R12301 T16310 T16312 mark as,described
R12302 T16311 T16312 advmod previously,described
R12303 T16312 T16298 advcl described,treating
R12304 T16313 T16315 nmod [,]
R12305 T16314 T16315 nummod 86,]
R12306 T16315 T16312 dobj ],described
R12307 T16316 T16296 punct .,determined
R12308 T16317 T16318 nummod 6,h
R12309 T16318 T16319 npadvmod h,later
R12310 T16319 T16324 advmod later,were
R12311 T16320 T16324 punct ",",were
R12312 T16321 T16324 nsubj BAL,were
R12313 T16322 T16321 cc and,BAL
R12314 T16323 T16321 conj lungs,BAL
R12315 T16324 T16324 ROOT were,were
R12316 T16325 T16324 acomp isolated,were
R12317 T16326 T16325 cc and,isolated
R12318 T16327 T16329 amod single,suspensions
R12319 T16328 T16329 compound cell,suspensions
R12320 T16329 T16331 nsubjpass suspensions,prepared
R12321 T16330 T16331 auxpass were,prepared
R12322 T16331 T16325 conj prepared,isolated
R12323 T16332 T16331 prep from,prepared
R12324 T16333 T16334 det the,lung
R12325 T16334 T16332 pobj lung,from
R12326 T16335 T16334 prep in,lung
R12327 T16336 T16337 det the,presence
R12328 T16337 T16335 pobj presence,in
R12329 T16338 T16337 prep of,presence
R12330 T16339 T16340 nummod 3,µg
R12331 T16340 T16342 compound µg,ml
R12332 T16341 T16342 compound /,ml
R12333 T16342 T16345 compound ml,Cells
R12334 T16343 T16345 compound Brefeldin,Cells
R12335 T16344 T16345 compound A.,Cells
R12336 T16345 T16338 pobj Cells,of
R12337 T16346 T16347 auxpass were,stained
R12338 T16347 T16331 conj stained,prepared
R12339 T16348 T16347 punct ",",stained
R12340 T16349 T16347 conj fixed,stained
R12341 T16350 T16349 cc and,fixed
R12342 T16351 T16349 conj permeabilized,fixed
R12343 T16352 T16358 punct (,according
R12344 T16353 T16358 dep Cytofix/Cytoperm,according
R12345 T16354 T16353 punct ",",Cytofix/Cytoperm
R12346 T16355 T16356 compound BD,Biosciences
R12347 T16356 T16353 appos Biosciences,Cytofix/Cytoperm
R12348 T16357 T16358 punct ),according
R12349 T16358 T16324 prep according,were
R12350 T16359 T16358 prep to,according
R12351 T16360 T16361 det the,manufacturer
R12352 T16361 T16363 poss manufacturer,instructions
R12353 T16362 T16361 case 's,manufacturer
R12354 T16363 T16359 pobj instructions,to
R12355 T16364 T16324 punct .,were
R12356 T16365 T16369 amod Activated,cells
R12357 T16366 T16369 nummod CD8,cells
R12358 T16367 T16369 nummod +,cells
R12359 T16368 T16369 compound T,cells
R12360 T16369 T16371 nsubjpass cells,analyzed
R12361 T16370 T16371 auxpass were,analyzed
R12362 T16371 T16371 ROOT analyzed,analyzed
R12363 T16372 T16371 agent by,analyzed
R12364 T16373 T16374 compound flow,cytometry
R12365 T16374 T16372 pobj cytometry,by
R12366 T16375 T16371 prep based,analyzed
R12367 T16376 T16375 prep on,based
R12368 T16377 T16379 compound CD62lo,+
R12369 T16378 T16379 compound CD3,+
R12370 T16379 T16376 pobj +,on
R12371 T16380 T16379 cc and,+
R12372 T16381 T16379 conj CD8,+
R12373 T16382 T16383 compound +,expression
R12374 T16383 T16383 ROOT expression,expression
R12375 T16384 T16371 punct .,analyzed
R12376 T16385 T16391 amod Live/Dead,kit
R12377 T16386 T16391 amod fixable,kit
R12378 T16387 T16390 compound aqua,stain
R12379 T16388 T16389 amod dead,cell
R12380 T16389 T16390 compound cell,stain
R12381 T16390 T16391 compound stain,kit
R12382 T16391 T16397 nsubjpass kit,used
R12383 T16392 T16394 punct (,Probes
R12384 T16393 T16394 compound Molecular,Probes
R12385 T16394 T16391 appos Probes,kit
R12386 T16395 T16394 punct ),Probes
R12387 T16396 T16397 auxpass was,used
R12388 T16397 T16397 ROOT used,used
R12389 T16398 T16399 aux to,discriminate
R12390 T16399 T16397 xcomp discriminate,used
R12391 T16400 T16399 advmod live,discriminate
R12392 T16401 T16400 prep from,live
R12393 T16402 T16403 amod dead,cells
R12394 T16403 T16401 pobj cells,from
R12395 T16404 T16397 punct .,used

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T16464 506-516 Gene_expression denotes expression
T16463 506-516 Gene_expression denotes expression
T16462 501-505 Protein denotes CD8+
T16461 485-495 Protein denotes CD62lo CD3
T16460 431-435 Protein denotes CD8+
T16459 283-294 Protein denotes Brefeldin A
T16458 26-36 Gene_expression denotes expressing
T16457 26-36 Gene_expression denotes expressing
T16456 26-36 Gene_expression denotes expressing
T16455 124-129 Protein denotes Sigma
T16454 111-122 Protein denotes Brefeldin A
T16453 37-41 Protein denotes CD8+
T16452 21-25 Protein denotes IFNγ
T16451 12-15 Protein denotes GrB
T16450 0-10 Protein denotes Granzyme B
R12405 T16450 T16456 themeOf Granzyme B,expressing
R12406 T16451 T16457 themeOf GrB,expressing
R12407 T16452 T16458 themeOf IFNγ,expressing
R12408 T16461 T16463 themeOf CD62lo CD3,expression
R12409 T16462 T16464 themeOf CD8+,expression

testone

Id Subject Object Predicate Lexical cue
T16088 506-516 Gene_expression denotes expression
T16087 26-36 Gene_expression denotes expressing
T16086 501-504 Protein denotes CD8
T16085 492-495 Protein denotes CD3
T16084 431-434 Protein denotes CD8
T16083 37-40 Protein denotes CD8
T16082 12-15 Protein denotes GrB
T16081 0-10 Protein denotes Granzyme B
R12117 T16081 T16087 themeOf Granzyme B,expressing
R12118 T16082 T16081 equivalentTo GrB,Granzyme B
R12119 T16085 T16088 themeOf CD3,expression
R12120 T16086 T16088 themeOf CD8,expression