PMC:3291650 / 35375-36071 JSONTXT

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    test3

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    2_test

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    pmc-enju-pas

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    bionlp-st-ge-2016-test-proteins

    {"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T16132","span":{"begin":571,"end":574},"obj":"Protein"},{"id":"T16131","span":{"begin":562,"end":565},"obj":"Protein"},{"id":"T16130","span":{"begin":501,"end":504},"obj":"Protein"},{"id":"T16129","span":{"begin":107,"end":110},"obj":"Protein"},{"id":"T16128","span":{"begin":82,"end":85},"obj":"Protein"},{"id":"T16127","span":{"begin":70,"end":80},"obj":"Protein"},{"id":"T16126","span":{"begin":57,"end":60},"obj":"Protein"},{"id":"T16125","span":{"begin":22,"end":25},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"In vivo intracellular GrB and IFNγ staining of activated CD8+ T cells\nGranzyme B (GrB) and IFNγ expressing CD8+ T cells were determined by treating the mice intranasally with 50 µg Brefeldin A (Sigma) as previously described [86]. 6 h later, BAL and lungs were isolated and single cell suspensions were prepared from the lung in the presence of 3 µg/ml Brefeldin A. Cells were stained, fixed and permeabilized (Cytofix/Cytoperm, BD Biosciences) according to the manufacturer's instructions. Activated CD8+ T cells were analyzed by flow cytometry based on CD62lo CD3+ and CD8+ expression. Live/Dead fixable aqua dead cell stain kit (Molecular Probes) was used to discriminate live from dead cells."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T16416","span":{"begin":562,"end":565},"obj":"http://www.uniprot.org/uniprot/P09693"},{"id":"T16415","span":{"begin":562,"end":565},"obj":"http://www.uniprot.org/uniprot/P07766"},{"id":"T16414","span":{"begin":562,"end":565},"obj":"http://www.uniprot.org/uniprot/P04234"},{"id":"T16413","span":{"begin":562,"end":565},"obj":"http://www.uniprot.org/uniprot/P20963"},{"id":"T16412","span":{"begin":571,"end":574},"obj":"http://www.uniprot.org/uniprot/P10966"},{"id":"T16411","span":{"begin":501,"end":504},"obj":"http://www.uniprot.org/uniprot/P10966"},{"id":"T16410","span":{"begin":107,"end":110},"obj":"http://www.uniprot.org/uniprot/P10966"},{"id":"T16409","span":{"begin":57,"end":60},"obj":"http://www.uniprot.org/uniprot/P10966"},{"id":"T16408","span":{"begin":571,"end":574},"obj":"http://www.uniprot.org/uniprot/P01732"},{"id":"T16407","span":{"begin":501,"end":504},"obj":"http://www.uniprot.org/uniprot/P01732"},{"id":"T16406","span":{"begin":107,"end":110},"obj":"http://www.uniprot.org/uniprot/P01732"},{"id":"T16405","span":{"begin":57,"end":60},"obj":"http://www.uniprot.org/uniprot/P01732"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"In vivo intracellular GrB and IFNγ staining of activated CD8+ T cells\nGranzyme B (GrB) and IFNγ expressing CD8+ T cells were determined by treating the mice intranasally with 50 µg Brefeldin A (Sigma) as previously described [86]. 6 h later, BAL and lungs were isolated and single cell suspensions were prepared from the lung in the presence of 3 µg/ml Brefeldin A. Cells were stained, fixed and permeabilized (Cytofix/Cytoperm, BD Biosciences) according to the manufacturer's instructions. Activated CD8+ T cells were analyzed by flow cytometry based on CD62lo CD3+ and CD8+ expression. Live/Dead fixable aqua dead cell stain kit (Molecular Probes) was used to discriminate live from dead cells."}

    UBERON-AE

    {"project":"UBERON-AE","denotations":[{"id":"T16108","span":{"begin":321,"end":325},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"T16107","span":{"begin":250,"end":255},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"}],"text":"In vivo intracellular GrB and IFNγ staining of activated CD8+ T cells\nGranzyme B (GrB) and IFNγ expressing CD8+ T cells were determined by treating the mice intranasally with 50 µg Brefeldin A (Sigma) as previously described [86]. 6 h later, BAL and lungs were isolated and single cell suspensions were prepared from the lung in the presence of 3 µg/ml Brefeldin A. Cells were stained, fixed and permeabilized (Cytofix/Cytoperm, BD Biosciences) according to the manufacturer's instructions. Activated CD8+ T cells were analyzed by flow cytometry based on CD62lo CD3+ and CD8+ expression. Live/Dead fixable aqua dead cell stain kit (Molecular Probes) was used to discriminate live from dead cells."}

    GO-CC

    {"project":"GO-CC","denotations":[{"id":"T16137","span":{"begin":690,"end":695},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T16136","span":{"begin":508,"end":513},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T16135","span":{"begin":114,"end":119},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T16134","span":{"begin":64,"end":69},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T16133","span":{"begin":8,"end":21},"obj":"http://purl.obolibrary.org/obo/GO_0005622"}],"text":"In vivo intracellular GrB and IFNγ staining of activated CD8+ T cells\nGranzyme B (GrB) and IFNγ expressing CD8+ T cells were determined by treating the mice intranasally with 50 µg Brefeldin A (Sigma) as previously described [86]. 6 h later, BAL and lungs were isolated and single cell suspensions were prepared from the lung in the presence of 3 µg/ml Brefeldin A. Cells were stained, fixed and permeabilized (Cytofix/Cytoperm, BD Biosciences) according to the manufacturer's instructions. Activated CD8+ T cells were analyzed by flow cytometry based on CD62lo CD3+ and CD8+ expression. Live/Dead fixable aqua dead cell stain kit (Molecular Probes) was used to discriminate live from dead cells."}

    sentences

    {"project":"sentences","denotations":[{"id":"T16113","span":{"begin":588,"end":696},"obj":"Sentence"},{"id":"T16112","span":{"begin":491,"end":587},"obj":"Sentence"},{"id":"T16111","span":{"begin":231,"end":490},"obj":"Sentence"},{"id":"T16110","span":{"begin":70,"end":230},"obj":"Sentence"},{"id":"T16109","span":{"begin":0,"end":69},"obj":"Sentence"},{"id":"T224","span":{"begin":0,"end":69},"obj":"Sentence"},{"id":"T225","span":{"begin":70,"end":230},"obj":"Sentence"},{"id":"T226","span":{"begin":231,"end":365},"obj":"Sentence"},{"id":"T227","span":{"begin":366,"end":490},"obj":"Sentence"},{"id":"T228","span":{"begin":491,"end":587},"obj":"Sentence"},{"id":"T229","span":{"begin":588,"end":696},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"In vivo intracellular GrB and IFNγ staining of activated CD8+ T cells\nGranzyme B (GrB) and IFNγ expressing CD8+ T cells were determined by treating the mice intranasally with 50 µg Brefeldin A (Sigma) as previously described [86]. 6 h later, BAL and lungs were isolated and single cell suspensions were prepared from the lung in the presence of 3 µg/ml Brefeldin A. Cells were stained, fixed and permeabilized (Cytofix/Cytoperm, BD Biosciences) according to the manufacturer's instructions. Activated CD8+ T cells were analyzed by flow cytometry based on CD62lo CD3+ and CD8+ expression. Live/Dead fixable aqua dead cell stain kit (Molecular Probes) was used to discriminate live from dead cells."}

    simple1

    {"project":"simple1","denotations":[{"id":"T16145","span":{"begin":571,"end":574},"obj":"Protein"},{"id":"T16144","span":{"begin":562,"end":565},"obj":"Protein"},{"id":"T16143","span":{"begin":501,"end":504},"obj":"Protein"},{"id":"T16142","span":{"begin":107,"end":110},"obj":"Protein"},{"id":"T16141","span":{"begin":82,"end":85},"obj":"Protein"},{"id":"T16140","span":{"begin":70,"end":80},"obj":"Protein"},{"id":"T16139","span":{"begin":57,"end":60},"obj":"Protein"},{"id":"T16138","span":{"begin":22,"end":25},"obj":"Protein"}],"text":"In vivo intracellular GrB and IFNγ staining of activated CD8+ T cells\nGranzyme B (GrB) and IFNγ expressing CD8+ T cells were determined by treating the mice intranasally with 50 µg Brefeldin A (Sigma) as previously described [86]. 6 h later, BAL and lungs were isolated and single cell suspensions were prepared from the lung in the presence of 3 µg/ml Brefeldin A. Cells were stained, fixed and permeabilized (Cytofix/Cytoperm, BD Biosciences) according to the manufacturer's instructions. Activated CD8+ T cells were analyzed by flow cytometry based on CD62lo CD3+ and CD8+ expression. Live/Dead fixable aqua dead cell stain kit (Molecular Probes) was used to discriminate live from dead cells."}

    BioNLP16_DUT

    {"project":"BioNLP16_DUT","denotations":[{"id":"T16502","span":{"begin":576,"end":586},"obj":"Gene_expression"},{"id":"T16501","span":{"begin":96,"end":106},"obj":"Gene_expression"},{"id":"T16500","span":{"begin":571,"end":574},"obj":"Protein"},{"id":"T16499","span":{"begin":562,"end":565},"obj":"Protein"},{"id":"T16498","span":{"begin":501,"end":504},"obj":"Protein"},{"id":"T16497","span":{"begin":107,"end":110},"obj":"Protein"},{"id":"T16496","span":{"begin":82,"end":85},"obj":"Protein"},{"id":"T16495","span":{"begin":70,"end":80},"obj":"Protein"},{"id":"T16494","span":{"begin":57,"end":60},"obj":"Protein"},{"id":"T16493","span":{"begin":22,"end":25},"obj":"Protein"}],"relations":[{"id":"R12418","pred":"themeOf","subj":"T16495","obj":"T16501"},{"id":"R12419","pred":"themeOf","subj":"T16496","obj":"T16501"},{"id":"R12420","pred":"themeOf","subj":"T16497","obj":"T16501"},{"id":"R12421","pred":"themeOf","subj":"T16499","obj":"T16502"},{"id":"R12422","pred":"themeOf","subj":"T16500","obj":"T16502"}],"text":"In vivo intracellular GrB and IFNγ staining of activated CD8+ T cells\nGranzyme B (GrB) and IFNγ expressing CD8+ T cells were determined by treating the mice intranasally with 50 µg Brefeldin A (Sigma) as previously described [86]. 6 h later, BAL and lungs were isolated and single cell suspensions were prepared from the lung in the presence of 3 µg/ml Brefeldin A. Cells were stained, fixed and permeabilized (Cytofix/Cytoperm, BD Biosciences) according to the manufacturer's instructions. Activated CD8+ T cells were analyzed by flow cytometry based on CD62lo CD3+ and CD8+ expression. Live/Dead fixable aqua dead cell stain kit (Molecular Probes) was used to discriminate live from dead cells."}

    BioNLP16_Messiy

    {"project":"BioNLP16_Messiy","denotations":[{"id":"T16434","span":{"begin":576,"end":586},"obj":"Gene_expression"},{"id":"T16433","span":{"begin":96,"end":106},"obj":"Gene_expression"},{"id":"T16432","span":{"begin":571,"end":574},"obj":"Protein"},{"id":"T16431","span":{"begin":562,"end":565},"obj":"Protein"},{"id":"T16430","span":{"begin":501,"end":504},"obj":"Protein"},{"id":"T16429","span":{"begin":107,"end":110},"obj":"Protein"},{"id":"T16428","span":{"begin":82,"end":85},"obj":"Protein"},{"id":"T16427","span":{"begin":70,"end":80},"obj":"Protein"},{"id":"T16426","span":{"begin":57,"end":60},"obj":"Protein"},{"id":"T16425","span":{"begin":22,"end":25},"obj":"Protein"}],"relations":[{"id":"R12396","pred":"themeOf","subj":"T16427","obj":"T16433"},{"id":"R12397","pred":"themeOf","subj":"T16428","obj":"T16433"},{"id":"R12398","pred":"themeOf","subj":"T16431","obj":"T16434"}],"text":"In vivo intracellular GrB and IFNγ staining of activated CD8+ T cells\nGranzyme B (GrB) and IFNγ expressing CD8+ T cells were determined by treating the mice intranasally with 50 µg Brefeldin A (Sigma) as previously described [86]. 6 h later, BAL and lungs were isolated and single cell suspensions were prepared from the lung in the presence of 3 µg/ml Brefeldin A. Cells were stained, fixed and permeabilized (Cytofix/Cytoperm, BD Biosciences) according to the manufacturer's instructions. Activated CD8+ T cells were analyzed by flow cytometry based on CD62lo CD3+ and CD8+ expression. Live/Dead fixable aqua dead cell stain kit (Molecular Probes) was used to discriminate live from dead cells."}

    DLUT931

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    bionlp-st-ge-2016-test-ihmc

    {"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T16523","span":{"begin":139,"end":169},"obj":"Regulation"},{"id":"T16522","span":{"begin":345,"end":364},"obj":"Entity"},{"id":"T16521","span":{"begin":606,"end":610},"obj":"Entity"},{"id":"T16520","span":{"begin":685,"end":695},"obj":"Entity"},{"id":"T16519","span":{"begin":588,"end":620},"obj":"Entity"},{"id":"T16518","span":{"begin":0,"end":69},"obj":"Entity"},{"id":"T16517","span":{"begin":366,"end":371},"obj":"Entity"},{"id":"T16516","span":{"begin":148,"end":156},"obj":"Protein"},{"id":"T16515","span":{"begin":242,"end":245},"obj":"Protein"},{"id":"T16514","span":{"begin":22,"end":25},"obj":"Protein"},{"id":"T16513","span":{"begin":194,"end":199},"obj":"Protein"},{"id":"T16512","span":{"begin":501,"end":513},"obj":"Entity"},{"id":"T16511","span":{"begin":231,"end":234},"obj":"Entity"},{"id":"T16510","span":{"begin":30,"end":34},"obj":"Protein"},{"id":"T16509","span":{"begin":82,"end":85},"obj":"Protein"},{"id":"T16508","span":{"begin":91,"end":95},"obj":"Protein"},{"id":"T16507","span":{"begin":91,"end":119},"obj":"Entity"},{"id":"T16506","span":{"begin":274,"end":297},"obj":"Entity"},{"id":"T16505","span":{"begin":47,"end":69},"obj":"Entity"},{"id":"T16504","span":{"begin":175,"end":200},"obj":"Entity"},{"id":"T16503","span":{"begin":70,"end":78},"obj":"Protein"}],"relations":[{"id":"R12423","pred":"themeOf","subj":"T16516","obj":"T16523"}],"text":"In vivo intracellular GrB and IFNγ staining of activated CD8+ T cells\nGranzyme B (GrB) and IFNγ expressing CD8+ T cells were determined by treating the mice intranasally with 50 µg Brefeldin A (Sigma) as previously described [86]. 6 h later, BAL and lungs were isolated and single cell suspensions were prepared from the lung in the presence of 3 µg/ml Brefeldin A. Cells were stained, fixed and permeabilized (Cytofix/Cytoperm, BD Biosciences) according to the manufacturer's instructions. Activated CD8+ T cells were analyzed by flow cytometry based on CD62lo CD3+ and CD8+ expression. Live/Dead fixable aqua dead cell stain kit (Molecular Probes) was used to discriminate live from dead cells."}

    bionlp-st-ge-2016-spacy-parsed

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