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PMC:3291650 / 35375-36071 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T16106 576-586 Gene_expression denotes expression
T16105 571-574 Protein denotes CD8
T16104 562-565 Protein denotes CD3
T16103 501-504 Protein denotes CD8
T16102 107-110 Protein denotes CD8
T16101 96-106 Gene_expression denotes expressing
T16100 82-85 Protein denotes GrB
T16099 70-80 Protein denotes Granzyme B
T16098 57-60 Protein denotes CD8
T16097 22-25 Protein denotes GrB
T16096 571-574 Protein denotes CD8
T16095 562-565 Protein denotes CD3
T16094 501-504 Protein denotes CD8
T16093 107-110 Protein denotes CD8
T16092 82-85 Protein denotes GrB
T16091 70-80 Protein denotes Granzyme B
T16090 57-60 Protein denotes CD8
T16089 22-25 Protein denotes GrB
R12121 T16099 T16101 themeOf Granzyme B,expressing
R12122 T16100 T16099 equivalentTo GrB,Granzyme B
R12123 T16104 T16106 themeOf CD3,expression
R12124 T16105 T16106 themeOf CD8,expression

2_test

Id Subject Object Predicate Lexical cue
22396652-21187318-98461893 226-228 21187318 denotes 86

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T16222 396-409 VB denotes permeabilized
T16221 392-395 CC denotes and
T16220 386-391 VB denotes fixed
T16219 384-385 -COMMA- denotes ,
T16218 377-384 VB denotes stained
T16217 372-376 VB denotes were
T16216 366-371 NNP denotes Cells
T16215 363-365 NN denotes A.
T16214 353-362 NNP denotes Brefeldin
T16213 347-352 NN denotes µg/ml
T16212 345-346 CD denotes 3
T16211 342-344 IN denotes of
T16210 333-341 NN denotes presence
T16209 329-332 DT denotes the
T16208 326-328 IN denotes in
T16207 321-325 NN denotes lung
T16206 317-320 DT denotes the
T16205 312-316 IN denotes from
T16204 303-311 VB denotes prepared
T16203 298-302 VB denotes were
T16202 286-297 NN denotes suspensions
T16201 281-285 NN denotes cell
T16200 274-280 JJ denotes single
T16199 270-273 CC denotes and
T16198 261-269 VB denotes isolated
T16197 256-260 VB denotes were
T16196 250-255 NN denotes lungs
T16195 246-249 CC denotes and
T16194 242-245 NN denotes BAL
T16193 240-241 -COMMA- denotes ,
T16192 235-240 RB denotes later
T16191 233-234 NN denotes h
T16190 231-232 CD denotes 6
T16189 228-229 -RRB- denotes ]
T16188 226-228 CD denotes 86
T16187 225-226 -LRB- denotes [
T16186 215-224 VB denotes described
T16185 204-214 RB denotes previously
T16184 201-203 IN denotes as
T16183 199-200 -RRB- denotes )
T16182 194-199 NN denotes Sigma
T16181 193-194 -LRB- denotes (
T16180 191-192 NN denotes A
T16179 181-190 NN denotes Brefeldin
T16178 178-180 NN denotes µg
T16177 175-177 CD denotes 50
T16176 170-174 IN denotes with
T16175 157-169 RB denotes intranasally
T16174 152-156 NN denotes mice
T16173 148-151 DT denotes the
T16172 139-147 VB denotes treating
T16171 136-138 IN denotes by
T16170 125-135 VB denotes determined
T16169 120-124 VB denotes were
T16168 114-119 NN denotes cells
T16167 112-113 NN denotes T
T16166 107-111 JJ denotes CD8+
T16165 96-106 VB denotes expressing
T16164 91-95 NN denotes IFNγ
T16163 87-90 CC denotes and
T16162 85-86 -RRB- denotes )
T16161 82-85 NN denotes GrB
T16160 81-82 -LRB- denotes (
T16159 79-80 NN denotes B
T16158 70-78 NN denotes Granzyme
T16157 64-69 NN denotes cells
T16156 62-63 NN denotes T
T16155 57-61 JJ denotes CD8+
T16154 47-56 VB denotes activated
T16153 44-46 IN denotes of
T16152 35-43 NN denotes staining
T16151 30-34 NN denotes IFNγ
T16150 26-29 CC denotes and
T16149 22-25 NN denotes GrB
T16148 8-21 JJ denotes intracellular
T16147 3-7 FW denotes vivo
T16146 0-2 FW denotes In
T16269 690-695 NN denotes cells
T16268 685-689 JJ denotes dead
T16267 680-684 IN denotes from
T16266 675-679 JJ denotes live
T16265 662-674 VB denotes discriminate
T16264 659-661 TO denotes to
T16263 654-658 VB denotes used
T16262 650-653 VB denotes was
T16261 648-649 -RRB- denotes )
T16260 642-648 NNP denotes Probes
T16259 632-641 NNP denotes Molecular
T16258 631-632 -LRB- denotes (
T16257 627-630 NN denotes kit
T16256 621-626 NN denotes stain
T16255 616-620 NN denotes cell
T16254 611-615 JJ denotes dead
T16253 606-610 NN denotes aqua
T16252 598-605 JJ denotes fixable
T16251 588-597 JJ denotes Live/Dead
T16250 576-586 NN denotes expression
T16249 571-575 JJ denotes CD8+
T16248 567-570 CC denotes and
T16247 562-566 JJ denotes CD3+
T16246 555-561 JJ denotes CD62lo
T16245 552-554 IN denotes on
T16244 546-551 VB denotes based
T16243 536-545 NN denotes cytometry
T16242 531-535 NN denotes flow
T16241 528-530 IN denotes by
T16240 519-527 VB denotes analyzed
T16239 514-518 VB denotes were
T16238 508-513 NN denotes cells
T16237 506-507 NN denotes T
T16236 501-505 JJ denotes CD8+
T16235 491-500 VB denotes Activated
T16234 477-489 NN denotes instructions
T16233 474-476 POS denotes 's
T16232 462-474 NN denotes manufacturer
T16231 458-461 DT denotes the
T16230 455-457 TO denotes to
T16229 445-454 VB denotes according
T16228 443-444 -RRB- denotes )
T16227 432-443 NNP denotes Biosciences
T16226 429-431 NNP denotes BD
T16225 427-428 -COMMA- denotes ,
T16224 411-427 NN denotes Cytofix/Cytoperm
T16223 410-411 -LRB- denotes (
R12129 T16147 T16146 arg1Of vivo,In
R12130 T16149 T16150 arg1Of GrB,and
R12131 T16151 T16150 arg2Of IFNγ,and
R12132 T16152 T16147 arg1Of staining,vivo
R12133 T16152 T16148 arg1Of staining,intracellular
R12134 T16152 T16149 arg1Of staining,GrB
R12135 T16152 T16151 arg1Of staining,IFNγ
R12136 T16152 T16153 arg1Of staining,of
R12137 T16157 T16153 arg2Of cells,of
R12138 T16157 T16154 arg2Of cells,activated
R12139 T16157 T16155 arg1Of cells,CD8+
R12140 T16157 T16156 arg1Of cells,T
R12141 T16159 T16158 arg1Of B,Granzyme
R12142 T16159 T16160 arg1Of B,(
R12143 T16159 T16163 arg1Of B,and
R12144 T16161 T16160 arg2Of GrB,(
R12145 T16162 T16160 arg3Of ),(
R12146 T16163 T16169 arg1Of and,were
R12147 T16163 T16170 arg2Of and,determined
R12148 T16164 T16163 arg2Of IFNγ,and
R12149 T16164 T16165 arg1Of IFNγ,expressing
R12150 T16168 T16165 arg2Of cells,expressing
R12151 T16168 T16166 arg1Of cells,CD8+
R12152 T16168 T16167 arg1Of cells,T
R12153 T16170 T16169 arg2Of determined,were
R12154 T16170 T16171 arg1Of determined,by
R12155 T16172 T16171 arg2Of treating,by
R12156 T16172 T16175 arg1Of treating,intranasally
R12157 T16172 T16176 arg1Of treating,with
R12158 T16174 T16172 arg2Of mice,treating
R12159 T16174 T16173 arg1Of mice,the
R12160 T16180 T16176 arg2Of A,with
R12161 T16180 T16177 arg1Of A,50
R12162 T16180 T16178 arg1Of A,µg
R12163 T16180 T16179 arg1Of A,Brefeldin
R12164 T16180 T16181 arg1Of A,(
R12165 T16180 T16184 arg1Of A,as
R12166 T16182 T16181 arg2Of Sigma,(
R12167 T16183 T16181 arg3Of ),(
R12168 T16186 T16185 arg1Of described,previously
R12169 T16188 T16184 arg2Of 86,as
R12170 T16188 T16186 arg1Of 86,described
R12171 T16188 T16187 arg2Of 86,[
R12172 T16189 T16187 arg3Of ],[
R12173 T16191 T16190 arg1Of h,6
R12174 T16194 T16195 arg1Of BAL,and
R12175 T16195 T16197 arg1Of and,were
R12176 T16195 T16198 arg2Of and,isolated
R12177 T16195 T16217 arg1Of and,were
R12178 T16195 T16218 arg2Of and,stained
R12179 T16195 T16220 arg2Of and,fixed
R12180 T16195 T16222 arg2Of and,permeabilized
R12181 T16196 T16195 arg2Of lungs,and
R12182 T16198 T16197 arg2Of isolated,were
R12183 T16198 T16199 arg1Of isolated,and
R12184 T16199 T16191 arg1Of and,h
R12185 T16199 T16192 arg1Of and,later
R12186 T16199 T16193 arg1Of and,","
R12187 T16202 T16200 arg1Of suspensions,single
R12188 T16202 T16201 arg1Of suspensions,cell
R12189 T16202 T16203 arg1Of suspensions,were
R12190 T16202 T16204 arg2Of suspensions,prepared
R12191 T16204 T16203 arg2Of prepared,were
R12192 T16204 T16205 arg1Of prepared,from
R12193 T16204 T16208 arg1Of prepared,in
R12194 T16207 T16205 arg2Of lung,from
R12195 T16207 T16206 arg1Of lung,the
R12196 T16210 T16208 arg2Of presence,in
R12197 T16210 T16209 arg1Of presence,the
R12198 T16210 T16211 arg1Of presence,of
R12199 T16216 T16211 arg2Of Cells,of
R12200 T16216 T16212 arg1Of Cells,3
R12201 T16216 T16213 arg1Of Cells,µg/ml
R12202 T16216 T16214 arg1Of Cells,Brefeldin
R12203 T16216 T16215 arg1Of Cells,A.
R12204 T16218 T16219 arg1Of stained,","
R12205 T16219 T16221 arg1Of ",",and
R12206 T16220 T16219 arg2Of fixed,","
R12207 T16221 T16199 arg2Of and,and
R12208 T16221 T16203 modOf and,were
R12209 T16221 T16217 arg2Of and,were
R12210 T16221 T16223 arg1Of and,(
R12211 T16221 T16229 arg1Of and,according
R12212 T16222 T16221 arg2Of permeabilized,and
R12213 T16224 T16223 arg2Of Cytofix/Cytoperm,(
R12214 T16224 T16225 arg1Of Cytofix/Cytoperm,","
R12215 T16227 T16225 arg2Of Biosciences,","
R12216 T16227 T16226 arg1Of Biosciences,BD
R12217 T16228 T16223 arg3Of ),(
R12218 T16230 T16229 arg2Of to,according
R12219 T16232 T16231 arg1Of manufacturer,the
R12220 T16232 T16233 arg2Of manufacturer,'s
R12221 T16234 T16230 arg2Of instructions,to
R12222 T16234 T16233 arg1Of instructions,'s
R12223 T16238 T16235 arg2Of cells,Activated
R12224 T16238 T16236 arg1Of cells,CD8+
R12225 T16238 T16237 arg1Of cells,T
R12226 T16238 T16239 arg1Of cells,were
R12227 T16238 T16240 arg2Of cells,analyzed
R12228 T16240 T16239 arg2Of analyzed,were
R12229 T16243 T16240 arg1Of cytometry,analyzed
R12230 T16243 T16241 arg2Of cytometry,by
R12231 T16243 T16242 arg1Of cytometry,flow
R12232 T16243 T16244 arg2Of cytometry,based
R12233 T16244 T16245 arg1Of based,on
R12234 T16247 T16248 arg1Of CD3+,and
R12235 T16249 T16248 arg2Of CD8+,and
R12236 T16250 T16245 arg2Of expression,on
R12237 T16250 T16246 arg1Of expression,CD62lo
R12238 T16250 T16247 arg1Of expression,CD3+
R12239 T16250 T16249 arg1Of expression,CD8+
R12240 T16257 T16251 arg1Of kit,Live/Dead
R12241 T16257 T16252 arg1Of kit,fixable
R12242 T16257 T16253 arg1Of kit,aqua
R12243 T16257 T16254 arg1Of kit,dead
R12244 T16257 T16255 arg1Of kit,cell
R12245 T16257 T16256 arg1Of kit,stain
R12246 T16257 T16258 arg1Of kit,(
R12247 T16257 T16262 arg1Of kit,was
R12248 T16257 T16263 arg2Of kit,used
R12249 T16257 T16265 arg1Of kit,discriminate
R12250 T16257 T16266 arg1Of kit,live
R12251 T16260 T16258 arg2Of Probes,(
R12252 T16260 T16259 arg1Of Probes,Molecular
R12253 T16261 T16258 arg3Of ),(
R12254 T16263 T16262 arg2Of used,was
R12255 T16265 T16263 arg3Of discriminate,used
R12256 T16265 T16264 arg1Of discriminate,to
R12257 T16266 T16265 arg2Of live,discriminate
R12258 T16266 T16267 arg1Of live,from
R12259 T16269 T16267 arg2Of cells,from
R12260 T16269 T16268 arg1Of cells,dead

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T16132 571-574 Protein denotes CD8
T16131 562-565 Protein denotes CD3
T16130 501-504 Protein denotes CD8
T16129 107-110 Protein denotes CD8
T16128 82-85 Protein denotes GrB
T16127 70-80 Protein denotes Granzyme B
T16126 57-60 Protein denotes CD8
T16125 22-25 Protein denotes GrB

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T16416 562-565 http://www.uniprot.org/uniprot/P09693 denotes CD3
T16415 562-565 http://www.uniprot.org/uniprot/P07766 denotes CD3
T16414 562-565 http://www.uniprot.org/uniprot/P04234 denotes CD3
T16413 562-565 http://www.uniprot.org/uniprot/P20963 denotes CD3
T16412 571-574 http://www.uniprot.org/uniprot/P10966 denotes CD8
T16411 501-504 http://www.uniprot.org/uniprot/P10966 denotes CD8
T16410 107-110 http://www.uniprot.org/uniprot/P10966 denotes CD8
T16409 57-60 http://www.uniprot.org/uniprot/P10966 denotes CD8
T16408 571-574 http://www.uniprot.org/uniprot/P01732 denotes CD8
T16407 501-504 http://www.uniprot.org/uniprot/P01732 denotes CD8
T16406 107-110 http://www.uniprot.org/uniprot/P01732 denotes CD8
T16405 57-60 http://www.uniprot.org/uniprot/P01732 denotes CD8

UBERON-AE

Id Subject Object Predicate Lexical cue
T16108 321-325 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T16107 250-255 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lungs

GO-CC

Id Subject Object Predicate Lexical cue
T16137 690-695 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T16136 508-513 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T16135 114-119 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T16134 64-69 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T16133 8-21 http://purl.obolibrary.org/obo/GO_0005622 denotes intracellular

sentences

Id Subject Object Predicate Lexical cue
T16113 588-696 Sentence denotes Live/Dead fixable aqua dead cell stain kit (Molecular Probes) was used to discriminate live from dead cells.
T16112 491-587 Sentence denotes Activated CD8+ T cells were analyzed by flow cytometry based on CD62lo CD3+ and CD8+ expression.
T16111 231-490 Sentence denotes 6 h later, BAL and lungs were isolated and single cell suspensions were prepared from the lung in the presence of 3 µg/ml Brefeldin A. Cells were stained, fixed and permeabilized (Cytofix/Cytoperm, BD Biosciences) according to the manufacturer's instructions.
T16110 70-230 Sentence denotes Granzyme B (GrB) and IFNγ expressing CD8+ T cells were determined by treating the mice intranasally with 50 µg Brefeldin A (Sigma) as previously described [86].
T16109 0-69 Sentence denotes In vivo intracellular GrB and IFNγ staining of activated CD8+ T cells
T224 0-69 Sentence denotes In vivo intracellular GrB and IFNγ staining of activated CD8+ T cells
T225 70-230 Sentence denotes Granzyme B (GrB) and IFNγ expressing CD8+ T cells were determined by treating the mice intranasally with 50 µg Brefeldin A (Sigma) as previously described [86].
T226 231-365 Sentence denotes 6 h later, BAL and lungs were isolated and single cell suspensions were prepared from the lung in the presence of 3 µg/ml Brefeldin A.
T227 366-490 Sentence denotes Cells were stained, fixed and permeabilized (Cytofix/Cytoperm, BD Biosciences) according to the manufacturer's instructions.
T228 491-587 Sentence denotes Activated CD8+ T cells were analyzed by flow cytometry based on CD62lo CD3+ and CD8+ expression.
T229 588-696 Sentence denotes Live/Dead fixable aqua dead cell stain kit (Molecular Probes) was used to discriminate live from dead cells.

simple1

Id Subject Object Predicate Lexical cue
T16145 571-574 Protein denotes CD8
T16144 562-565 Protein denotes CD3
T16143 501-504 Protein denotes CD8
T16142 107-110 Protein denotes CD8
T16141 82-85 Protein denotes GrB
T16140 70-80 Protein denotes Granzyme B
T16139 57-60 Protein denotes CD8
T16138 22-25 Protein denotes GrB

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T16502 576-586 Gene_expression denotes expression
T16501 96-106 Gene_expression denotes expressing
T16500 571-574 Protein denotes CD8
T16499 562-565 Protein denotes CD3
T16498 501-504 Protein denotes CD8
T16497 107-110 Protein denotes CD8
T16496 82-85 Protein denotes GrB
T16495 70-80 Protein denotes Granzyme B
T16494 57-60 Protein denotes CD8
T16493 22-25 Protein denotes GrB
R12418 T16495 T16501 themeOf Granzyme B,expressing
R12419 T16496 T16501 themeOf GrB,expressing
R12420 T16497 T16501 themeOf CD8,expressing
R12421 T16499 T16502 themeOf CD3,expression
R12422 T16500 T16502 themeOf CD8,expression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T16434 576-586 Gene_expression denotes expression
T16433 96-106 Gene_expression denotes expressing
T16432 571-574 Protein denotes CD8
T16431 562-565 Protein denotes CD3
T16430 501-504 Protein denotes CD8
T16429 107-110 Protein denotes CD8
T16428 82-85 Protein denotes GrB
T16427 70-80 Protein denotes Granzyme B
T16426 57-60 Protein denotes CD8
T16425 22-25 Protein denotes GrB
R12396 T16427 T16433 themeOf Granzyme B,expressing
R12397 T16428 T16433 themeOf GrB,expressing
R12398 T16431 T16434 themeOf CD3,expression

DLUT931

Id Subject Object Predicate Lexical cue
T16444 576-586 Gene_expression denotes expression
T16443 96-106 Gene_expression denotes expressing
T16442 571-574 Protein denotes CD8
T16441 562-565 Protein denotes CD3
T16440 501-504 Protein denotes CD8
T16439 107-110 Protein denotes CD8
T16438 82-85 Protein denotes GrB
T16437 70-80 Protein denotes Granzyme B
T16436 57-60 Protein denotes CD8
T16435 22-25 Protein denotes GrB
R12399 T16437 T16443 themeOf Granzyme B,expressing
R12400 T16438 T16443 themeOf GrB,expressing
R12401 T16441 T16444 themeOf CD3,expression
R12402 T16442 T16444 themeOf CD8,expression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T16523 139-169 Regulation denotes treating the mice intranasally
T16522 345-364 Entity denotes 3 µg/ml Brefeldin A
T16521 606-610 Entity denotes aqua
T16520 685-695 Entity denotes dead cells
T16519 588-620 Entity denotes Live/Dead fixable aqua dead cell
T16518 0-69 Entity denotes In vivo intracellular GrB and IFNγ staining of activated CD8+ T cells
T16517 366-371 Entity denotes Cells
T16516 148-156 Protein denotes the mice
T16515 242-245 Protein denotes BAL
T16514 22-25 Protein denotes GrB
T16513 194-199 Protein denotes Sigma
T16512 501-513 Entity denotes CD8+ T cells
T16511 231-234 Entity denotes 6 h
T16510 30-34 Protein denotes IFNγ
T16509 82-85 Protein denotes GrB
T16508 91-95 Protein denotes IFNγ
T16507 91-119 Entity denotes IFNγ expressing CD8+ T cells
T16506 274-297 Entity denotes single cell suspensions
T16505 47-69 Entity denotes activated CD8+ T cells
T16504 175-200 Entity denotes 50 µg Brefeldin A (Sigma)
T16503 70-78 Protein denotes Granzyme
R12423 T16516 T16523 themeOf the mice,treating the mice intranasally

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T16404 695-696 . denotes .
T16403 690-695 NNS denotes cells
T16402 685-689 JJ denotes dead
T16401 680-684 IN denotes from
T16400 675-679 JJ denotes live
T16399 662-674 JJ denotes discriminate
T16398 659-661 TO denotes to
T16397 654-658 VBN denotes used
T16396 650-653 VBD denotes was
T16395 648-649 -RRB- denotes )
T16394 642-648 NNS denotes Probes
T16393 632-641 JJ denotes Molecular
T16392 631-632 -LRB- denotes (
T16391 627-630 NN denotes kit
T16390 621-626 VB denotes stain
T16389 616-620 NN denotes cell
T16388 611-615 JJ denotes dead
T16387 606-610 NN denotes aqua
T16386 598-605 JJ denotes fixable
T16385 588-597 JJ denotes Live/Dead
T16384 586-587 . denotes .
T16383 576-586 NN denotes expression
T16382 574-575 VBP denotes +
T16381 571-574 NNP denotes CD8
T16380 567-570 CC denotes and
T16379 565-566 NNP denotes +
T16378 562-565 NNP denotes CD3
T16377 555-561 NNP denotes CD62lo
T16376 552-554 IN denotes on
T16375 546-551 VBN denotes based
T16374 536-545 NN denotes cytometry
T16373 531-535 NN denotes flow
T16372 528-530 IN denotes by
T16371 519-527 VBN denotes analyzed
T16370 514-518 VBD denotes were
T16369 508-513 NNS denotes cells
T16368 506-507 NNP denotes T
T16367 504-505 CD denotes +
T16366 501-504 CD denotes CD8
T16365 491-500 VBN denotes Activated
T16364 489-490 . denotes .
T16363 477-489 NNS denotes instructions
T16362 474-476 POS denotes 's
T16361 462-474 NN denotes manufacturer
T16360 458-461 DT denotes the
T16359 455-457 TO denotes to
T16358 445-454 VBG denotes according
T16357 443-444 -RRB- denotes )
T16356 432-443 NNP denotes Biosciences
T16355 429-431 NNP denotes BD
T16354 427-428 , denotes ,
T16353 411-427 NNP denotes Cytofix/Cytoperm
T16352 410-411 -LRB- denotes (
T16351 396-409 VBN denotes permeabilized
T16350 392-395 CC denotes and
T16349 386-391 VBN denotes fixed
T16348 384-385 , denotes ,
T16347 377-384 VBN denotes stained
T16346 372-376 VBD denotes were
T16345 366-371 NNP denotes Cells
T16344 363-365 NNP denotes A.
T16343 353-362 NNP denotes Brefeldin
T16342 350-352 NN denotes ml
T16341 349-350 NN denotes /
T16340 347-349 NN denotes µg
T16339 345-346 CD denotes 3
T16338 342-344 IN denotes of
T16337 333-341 NN denotes presence
T16336 329-332 DT denotes the
T16335 326-328 IN denotes in
T16334 321-325 NN denotes lung
T16333 317-320 DT denotes the
T16332 312-316 IN denotes from
T16331 303-311 VBN denotes prepared
T16330 298-302 VBD denotes were
T16329 286-297 NNS denotes suspensions
T16328 281-285 NN denotes cell
T16327 274-280 JJ denotes single
T16326 270-273 CC denotes and
T16325 261-269 VBN denotes isolated
T16324 256-260 VBD denotes were
T16323 250-255 NNS denotes lungs
T16322 246-249 CC denotes and
T16321 242-245 NNP denotes BAL
T16320 240-241 , denotes ,
T16319 235-240 RB denotes later
T16318 233-234 NN denotes h
T16317 231-232 CD denotes 6
T16316 229-230 . denotes .
T16315 228-229 NNP denotes ]
T16314 226-228 CD denotes 86
T16313 225-226 NNP denotes [
T16312 215-224 VBN denotes described
T16311 204-214 RB denotes previously
T16310 201-203 IN denotes as
T16309 199-200 -RRB- denotes )
T16308 194-199 NNP denotes Sigma
T16307 193-194 -LRB- denotes (
T16306 191-192 NNP denotes A
T16305 181-190 NNP denotes Brefeldin
T16304 178-180 NN denotes µg
T16303 175-177 CD denotes 50
T16302 170-174 IN denotes with
T16301 157-169 RB denotes intranasally
T16300 152-156 NNS denotes mice
T16299 148-151 DT denotes the
T16298 139-147 VBG denotes treating
T16297 136-138 IN denotes by
T16296 125-135 VBN denotes determined
T16295 120-124 VBD denotes were
T16294 114-119 NNS denotes cells
T16293 112-113 NNP denotes T
T16292 110-111 CD denotes +
T16291 107-110 CD denotes CD8
T16290 96-106 VBG denotes expressing
T16289 91-95 NNP denotes IFNγ
T16288 87-90 CC denotes and
T16287 85-86 -RRB- denotes )
T16286 82-85 NNP denotes GrB
T16285 81-82 -LRB- denotes (
T16284 79-80 NNP denotes B
T16283 70-78 NNP denotes Granzyme
T16282 64-69 NNS denotes cells
T16281 62-63 NNP denotes T
T16280 60-61 CD denotes +
T16279 57-60 NNP denotes CD8
T16278 47-56 VBN denotes activated
T16277 44-46 IN denotes of
T16276 35-43 NN denotes staining
T16275 30-34 NNP denotes IFNγ
T16274 26-29 CC denotes and
T16273 22-25 NNP denotes GrB
T16272 8-21 JJ denotes intracellular
T16271 3-7 NN denotes vivo
T16270 0-2 IN denotes In
R12261 T16270 T16290 prep In,expressing
R12262 T16271 T16273 compound vivo,GrB
R12263 T16272 T16273 compound intracellular,GrB
R12264 T16273 T16270 pobj GrB,In
R12265 T16274 T16273 cc and,GrB
R12266 T16275 T16276 compound IFNγ,staining
R12267 T16276 T16290 nsubj staining,expressing
R12268 T16277 T16276 prep of,staining
R12269 T16278 T16282 amod activated,cells
R12270 T16279 T16282 quantmod CD8,cells
R12271 T16280 T16282 nummod +,cells
R12272 T16281 T16282 compound T,cells
R12273 T16282 T16277 pobj cells,of
R12274 T16283 T16284 compound Granzyme,B
R12275 T16284 T16290 nsubj B,expressing
R12276 T16285 T16284 punct (,B
R12277 T16286 T16284 appos GrB,B
R12278 T16287 T16284 punct ),B
R12279 T16288 T16284 cc and,B
R12280 T16289 T16284 conj IFNγ,B
R12281 T16290 T16296 csubjpass expressing,determined
R12282 T16291 T16294 nummod CD8,cells
R12283 T16292 T16294 nummod +,cells
R12284 T16293 T16294 compound T,cells
R12285 T16294 T16290 dobj cells,expressing
R12286 T16295 T16296 auxpass were,determined
R12287 T16296 T16296 ROOT determined,determined
R12288 T16297 T16296 prep by,determined
R12289 T16298 T16297 pcomp treating,by
R12290 T16299 T16300 det the,mice
R12291 T16300 T16298 dobj mice,treating
R12292 T16301 T16298 advmod intranasally,treating
R12293 T16302 T16298 prep with,treating
R12294 T16303 T16304 nummod 50,µg
R12295 T16304 T16306 compound µg,A
R12296 T16305 T16306 compound Brefeldin,A
R12297 T16306 T16302 pobj A,with
R12298 T16307 T16306 punct (,A
R12299 T16308 T16306 appos Sigma,A
R12300 T16309 T16306 punct ),A
R12301 T16310 T16312 mark as,described
R12302 T16311 T16312 advmod previously,described
R12303 T16312 T16298 advcl described,treating
R12304 T16313 T16315 nmod [,]
R12305 T16314 T16315 nummod 86,]
R12306 T16315 T16312 dobj ],described
R12307 T16316 T16296 punct .,determined
R12308 T16317 T16318 nummod 6,h
R12309 T16318 T16319 npadvmod h,later
R12310 T16319 T16324 advmod later,were
R12311 T16320 T16324 punct ",",were
R12312 T16321 T16324 nsubj BAL,were
R12313 T16322 T16321 cc and,BAL
R12314 T16323 T16321 conj lungs,BAL
R12315 T16324 T16324 ROOT were,were
R12316 T16325 T16324 acomp isolated,were
R12317 T16326 T16325 cc and,isolated
R12318 T16327 T16329 amod single,suspensions
R12319 T16328 T16329 compound cell,suspensions
R12320 T16329 T16331 nsubjpass suspensions,prepared
R12321 T16330 T16331 auxpass were,prepared
R12322 T16331 T16325 conj prepared,isolated
R12323 T16332 T16331 prep from,prepared
R12324 T16333 T16334 det the,lung
R12325 T16334 T16332 pobj lung,from
R12326 T16335 T16334 prep in,lung
R12327 T16336 T16337 det the,presence
R12328 T16337 T16335 pobj presence,in
R12329 T16338 T16337 prep of,presence
R12330 T16339 T16340 nummod 3,µg
R12331 T16340 T16342 compound µg,ml
R12332 T16341 T16342 compound /,ml
R12333 T16342 T16345 compound ml,Cells
R12334 T16343 T16345 compound Brefeldin,Cells
R12335 T16344 T16345 compound A.,Cells
R12336 T16345 T16338 pobj Cells,of
R12337 T16346 T16347 auxpass were,stained
R12338 T16347 T16331 conj stained,prepared
R12339 T16348 T16347 punct ",",stained
R12340 T16349 T16347 conj fixed,stained
R12341 T16350 T16349 cc and,fixed
R12342 T16351 T16349 conj permeabilized,fixed
R12343 T16352 T16358 punct (,according
R12344 T16353 T16358 dep Cytofix/Cytoperm,according
R12345 T16354 T16353 punct ",",Cytofix/Cytoperm
R12346 T16355 T16356 compound BD,Biosciences
R12347 T16356 T16353 appos Biosciences,Cytofix/Cytoperm
R12348 T16357 T16358 punct ),according
R12349 T16358 T16324 prep according,were
R12350 T16359 T16358 prep to,according
R12351 T16360 T16361 det the,manufacturer
R12352 T16361 T16363 poss manufacturer,instructions
R12353 T16362 T16361 case 's,manufacturer
R12354 T16363 T16359 pobj instructions,to
R12355 T16364 T16324 punct .,were
R12356 T16365 T16369 amod Activated,cells
R12357 T16366 T16369 nummod CD8,cells
R12358 T16367 T16369 nummod +,cells
R12359 T16368 T16369 compound T,cells
R12360 T16369 T16371 nsubjpass cells,analyzed
R12361 T16370 T16371 auxpass were,analyzed
R12362 T16371 T16371 ROOT analyzed,analyzed
R12363 T16372 T16371 agent by,analyzed
R12364 T16373 T16374 compound flow,cytometry
R12365 T16374 T16372 pobj cytometry,by
R12366 T16375 T16371 prep based,analyzed
R12367 T16376 T16375 prep on,based
R12368 T16377 T16379 compound CD62lo,+
R12369 T16378 T16379 compound CD3,+
R12370 T16379 T16376 pobj +,on
R12371 T16380 T16379 cc and,+
R12372 T16381 T16379 conj CD8,+
R12373 T16382 T16383 compound +,expression
R12374 T16383 T16383 ROOT expression,expression
R12375 T16384 T16371 punct .,analyzed
R12376 T16385 T16391 amod Live/Dead,kit
R12377 T16386 T16391 amod fixable,kit
R12378 T16387 T16390 compound aqua,stain
R12379 T16388 T16389 amod dead,cell
R12380 T16389 T16390 compound cell,stain
R12381 T16390 T16391 compound stain,kit
R12382 T16391 T16397 nsubjpass kit,used
R12383 T16392 T16394 punct (,Probes
R12384 T16393 T16394 compound Molecular,Probes
R12385 T16394 T16391 appos Probes,kit
R12386 T16395 T16394 punct ),Probes
R12387 T16396 T16397 auxpass was,used
R12388 T16397 T16397 ROOT used,used
R12389 T16398 T16399 aux to,discriminate
R12390 T16399 T16397 xcomp discriminate,used
R12391 T16400 T16399 advmod live,discriminate
R12392 T16401 T16400 prep from,live
R12393 T16402 T16403 amod dead,cells
R12394 T16403 T16401 pobj cells,from
R12395 T16404 T16397 punct .,used

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T16464 576-586 Gene_expression denotes expression
T16463 576-586 Gene_expression denotes expression
T16462 571-575 Protein denotes CD8+
T16461 555-565 Protein denotes CD62lo CD3
T16460 501-505 Protein denotes CD8+
T16459 353-364 Protein denotes Brefeldin A
T16458 96-106 Gene_expression denotes expressing
T16457 96-106 Gene_expression denotes expressing
T16456 96-106 Gene_expression denotes expressing
T16455 194-199 Protein denotes Sigma
T16454 181-192 Protein denotes Brefeldin A
T16453 107-111 Protein denotes CD8+
T16452 91-95 Protein denotes IFNγ
T16451 82-85 Protein denotes GrB
T16450 70-80 Protein denotes Granzyme B
T16449 35-43 Gene_expression denotes staining
T16448 35-43 Gene_expression denotes staining
T16447 57-61 Protein denotes CD8+
T16446 30-34 Protein denotes IFNγ
T16445 22-25 Protein denotes GrB
R12403 T16445 T16448 themeOf GrB,staining
R12404 T16446 T16449 themeOf IFNγ,staining
R12405 T16450 T16456 themeOf Granzyme B,expressing
R12406 T16451 T16457 themeOf GrB,expressing
R12407 T16452 T16458 themeOf IFNγ,expressing
R12408 T16461 T16463 themeOf CD62lo CD3,expression
R12409 T16462 T16464 themeOf CD8+,expression

testone

Id Subject Object Predicate Lexical cue
T16088 576-586 Gene_expression denotes expression
T16087 96-106 Gene_expression denotes expressing
T16086 571-574 Protein denotes CD8
T16085 562-565 Protein denotes CD3
T16084 501-504 Protein denotes CD8
T16083 107-110 Protein denotes CD8
T16082 82-85 Protein denotes GrB
T16081 70-80 Protein denotes Granzyme B
T16080 57-60 Protein denotes CD8
T16079 22-25 Protein denotes GrB
R12117 T16081 T16087 themeOf Granzyme B,expressing
R12118 T16082 T16081 equivalentTo GrB,Granzyme B
R12119 T16085 T16088 themeOf CD3,expression
R12120 T16086 T16088 themeOf CD8,expression