> top > docs > PMC:3291650 > spans > 17692-18922 > annotations

PMC:3291650 / 17692-18922 JSONTXT

Annnotations TAB JSON ListView MergeView

test3

Id Subject Object Predicate Lexical cue
T8667 1093-1097 Negative_regulation denotes loss
T8666 29-39 Gene_expression denotes expression
T8665 17-21 Regulation denotes role
R6102 T8666 T8665 themeOf expression,role

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T9153 1220-1229 NN denotes infection
T9152 1213-1219 IN denotes during
T9151 1206-1212 NN denotes stages
T9150 1200-1205 JJ denotes later
T9149 1197-1199 IN denotes at
T9148 1187-1196 NN denotes clearance
T9147 1181-1186 JJ denotes viral
T9146 1178-1180 TO denotes to
T9145 1166-1177 VB denotes contributes
T9144 1162-1165 CC denotes but
T9143 1150-1161 NN denotes replication
T9142 1144-1149 JJ denotes viral
T9141 1138-1143 JJ denotes early
T9140 1131-1137 VB denotes affect
T9139 1127-1130 RB denotes not
T9138 1122-1126 VB denotes does
T9137 1116-1121 NN denotes cells
T9136 1108-1115 JJ denotes myeloid
T9135 1105-1107 IN denotes in
T9134 1101-1104 NN denotes A20
T9133 1098-1100 IN denotes of
T9132 1093-1097 NN denotes loss
T9131 1088-1092 IN denotes that
T9130 1078-1087 VB denotes indicates
T9129 1073-1077 DT denotes This
T9128 1070-1071 -RRB- denotes )
T9127 1068-1070 NN denotes 3B
T9126 1061-1067 NN denotes figure
T9125 1060-1061 -LRB- denotes (
T9124 1055-1059 NN denotes mice
T9123 1050-1054 NN denotes type
T9122 1045-1049 JJ denotes wild
T9121 1041-1044 DT denotes all
T9120 1038-1040 IN denotes of
T9119 1032-1037 NN denotes lungs
T9118 1027-1031 IN denotes from
T9117 1018-1026 VB denotes isolated
T9116 1015-1017 VB denotes be
T9115 1009-1014 RB denotes still
T9114 1003-1008 MD denotes could
T9113 993-1002 NN denotes particles
T9112 987-992 JJ denotes viral
T9111 976-986 JJ denotes infectious
T9110 967-975 JJ denotes abundant
T9109 961-966 IN denotes while
T9108 956-960 NN denotes mice
T9107 945-955 NN denotes A20myel-KO
T9106 942-944 IN denotes of
T9105 936-941 NN denotes lungs
T9104 932-935 DT denotes the
T9103 929-931 IN denotes in
T9102 920-928 VB denotes detected
T9101 917-919 VB denotes be
T9100 911-916 MD denotes could
T9099 905-910 NN denotes virus
T9098 902-904 DT denotes no
T9097 895-901 RB denotes almost
T9096 893-894 -COMMA- denotes ,
T9095 889-893 NN denotes days
T9094 886-888 CD denotes 10
T9093 880-885 IN denotes after
T9092 878-879 -COMMA- denotes ,
T9091 871-878 RB denotes However
T9090 860-869 NN denotes infection
T9089 855-859 NN denotes post
T9088 853-854 CD denotes 7
T9087 849-852 CC denotes and
T9086 847-848 CD denotes 4
T9085 843-846 NN denotes day
T9084 840-842 IN denotes at
T9083 835-839 NN denotes mice
T9082 830-834 NN denotes type
T9081 825-829 JJ denotes wild
T9080 818-824 IN denotes versus
T9079 813-817 NN denotes mice
T9078 802-812 NN denotes A20myel-KO
T9077 799-801 IN denotes in
T9076 790-798 VB denotes observed
T9075 785-789 VB denotes were
T9074 778-784 NN denotes titers
T9073 772-777 JJ denotes viral
T9072 769-771 IN denotes in
T9071 757-768 NN denotes differences
T9070 754-756 DT denotes No
T9069 743-752 NN denotes infection
T9047 643-653 NN denotes A20myel-KO
T9046 640-642 IN denotes in
T9045 634-639 JJ denotes lower
T9044 625-633 RB denotes slightly
T9043 621-624 VB denotes was
T9042 617-620 CC denotes and
T9041 615-616 -COMMA- denotes ,
T9040 611-615 NN denotes mice
T9039 600-610 NN denotes A20myel-KO
T9038 596-599 CC denotes and
T9037 591-595 NN denotes type
T9036 586-590 JJ denotes wild
T9035 581-585 CC denotes both
T9034 578-580 IN denotes in
T9033 568-577 NN denotes infection
T9032 563-567 VB denotes post
T9031 558-562 NN denotes days
T9030 555-557 CD denotes 10
T9029 551-554 CC denotes and
T9028 549-550 CD denotes 7
T9027 546-548 IN denotes at
T9026 532-545 RB denotes significantly
T9025 522-531 VB denotes increased
T9024 518-521 VB denotes was
T9023 516-517 -COMMA- denotes ,
T9022 509-516 NN denotes leakage
T9021 500-508 JJ denotes vascular
T9020 496-499 CC denotes and
T9019 489-495 NN denotes damage
T9018 484-488 NN denotes lung
T9017 475-483 VB denotes reflects
T9016 469-474 WDT denotes which
T9015 467-468 -COMMA- denotes ,
T9014 462-467 NN denotes fluid
T9013 458-461 NN denotes BAL
T9012 455-457 IN denotes in
T9011 441-454 NN denotes concentration
T9010 433-440 NN denotes protein
T9009 427-432 JJ denotes total
T9008 425-426 -COMMA- denotes ,
T9007 421-425 RB denotes Also
T9006 418-419 -RRB- denotes )
T9005 416-418 NN denotes 3A
T9004 409-415 NN denotes figure
T9003 408-409 -LRB- denotes (
T9002 398-407 NN denotes challenge
T9001 392-397 JJ denotes viral
T9000 388-391 DT denotes the
T8999 383-387 IN denotes from
T8998 376-382 RB denotes faster
T8997 366-375 VB denotes recovered
T8996 362-365 CC denotes and
T8995 350-361 NN denotes littermates
T8994 342-349 NN denotes control
T8993 337-341 NN denotes type
T8992 332-336 JJ denotes wild
T8991 329-331 TO denotes to
T8990 320-328 VB denotes compared
T8989 315-319 NN denotes loss
T8988 308-314 NN denotes weight
T8987 300-307 VB denotes reduced
T8986 293-299 VB denotes showed
T8985 288-292 NN denotes mice
T8984 277-287 NN denotes A20myel-KO
T8983 271-275 NN denotes loss
T8982 264-270 NN denotes weight
T8981 261-263 IN denotes of
T8980 255-260 NN denotes terms
T8979 252-254 IN denotes in
T8978 242-251 NN denotes morbidity
T8977 232-241 VB denotes monitored
T8976 228-231 CC denotes and
T8975 221-227 NN denotes strain
T8974 219-220 -RRB- denotes )
T8973 215-219 NN denotes H3N2
T8972 214-215 -LRB- denotes (
T8971 209-213 NN denotes X-47
T8970 205-208 NN denotes IAV
T8969 197-204 VB denotes adapted
T8968 191-196 NN denotes mouse
T8967 187-190 DT denotes the
T8966 184-186 IN denotes of
T8965 179-183 NN denotes dose
T8964 169-178 JJ denotes sublethal
T8963 167-168 DT denotes a
T8962 162-166 IN denotes with
T8961 150-161 NN denotes littermates
T8960 142-149 NN denotes control
T8959 138-141 CC denotes and
T8958 133-137 NN denotes mice
T8957 122-132 NN denotes A20myel-KO
T8956 117-121 CC denotes both
T8955 106-116 VB denotes inoculated
T8954 93-105 RB denotes intranasally
T8953 90-92 PRP denotes we
T8952 88-89 -COMMA- denotes ,
T8951 84-88 FW denotes vivo
T8950 81-83 FW denotes in
T8949 71-80 NN denotes infection
T8948 67-70 NN denotes IAV
T8947 64-66 DT denotes an
T8946 57-63 IN denotes during
T8945 51-56 NN denotes cells
T8944 43-50 JJ denotes myeloid
T8943 40-42 IN denotes in
T8942 29-39 NN denotes expression
T8941 25-28 NN denotes A20
T8940 22-24 IN denotes of
T8939 17-21 NN denotes role
T8938 13-16 DT denotes the
T8937 3-12 VB denotes determine
T8936 0-2 TO denotes To
T9068 738-742 JJ denotes post
T9067 733-737 NN denotes days
T9066 730-732 CD denotes 10
T9065 726-729 CC denotes and
T9064 724-725 CD denotes 7
T9063 722-723 -COMMA- denotes ,
T9062 721-722 CD denotes 4
T9061 718-720 IN denotes at
T9060 711-717 NN denotes titers
T9059 705-710 JJ denotes viral
T9058 695-704 JJ denotes pulmonary
T9057 686-694 VB denotes measured
T9056 683-685 PRP denotes we
T9055 681-682 -COMMA- denotes ,
T9054 677-681 RB denotes Next
T9053 674-675 -RRB- denotes )
T9052 669-674 VB denotes shown
T9051 665-668 RB denotes not
T9050 660-664 NN denotes data
T9049 659-660 -LRB- denotes (
T9048 654-658 NN denotes mice
R6148 T8937 T8936 arg1Of determine,To
R6149 T8937 T8946 arg1Of determine,during
R6150 T8937 T8951 arg1Of determine,vivo
R6151 T8939 T8937 arg2Of role,determine
R6152 T8939 T8938 arg1Of role,the
R6153 T8939 T8940 arg1Of role,of
R6154 T8939 T8943 arg1Of role,in
R6155 T8942 T8940 arg2Of expression,of
R6156 T8942 T8941 arg1Of expression,A20
R6157 T8945 T8943 arg2Of cells,in
R6158 T8945 T8944 arg1Of cells,myeloid
R6159 T8949 T8946 arg2Of infection,during
R6160 T8949 T8947 arg1Of infection,an
R6161 T8949 T8948 arg1Of infection,IAV
R6162 T8951 T8950 arg1Of vivo,in
R6163 T8953 T8937 arg1Of we,determine
R6164 T8953 T8955 arg1Of we,inoculated
R6165 T8955 T8936 modOf inoculated,To
R6166 T8955 T8952 arg1Of inoculated,","
R6167 T8955 T8954 arg1Of inoculated,intranasally
R6168 T8955 T8979 arg1Of inoculated,in
R6169 T8958 T8957 arg1Of mice,A20myel-KO
R6170 T8958 T8959 arg1Of mice,and
R6171 T8959 T8955 arg2Of and,inoculated
R6172 T8959 T8956 arg1Of and,both
R6173 T8959 T8962 arg1Of and,with
R6174 T8959 T8969 arg2Of and,adapted
R6175 T8961 T8959 arg2Of littermates,and
R6176 T8961 T8960 arg1Of littermates,control
R6177 T8965 T8962 arg2Of dose,with
R6178 T8965 T8963 arg1Of dose,a
R6179 T8965 T8964 arg1Of dose,sublethal
R6180 T8965 T8966 arg1Of dose,of
R6181 T8968 T8966 arg2Of mouse,of
R6182 T8968 T8967 arg1Of mouse,the
R6183 T8973 T8972 arg2Of H3N2,(
R6184 T8974 T8972 arg3Of ),(
R6185 T8975 T8970 arg1Of strain,IAV
R6186 T8975 T8971 arg1Of strain,X-47
R6187 T8975 T8972 arg1Of strain,(
R6188 T8975 T8976 arg1Of strain,and
R6189 T8976 T8969 arg3Of and,adapted
R6190 T8978 T8976 arg2Of morbidity,and
R6191 T8978 T8977 arg2Of morbidity,monitored
R6192 T8980 T8979 arg2Of terms,in
R6193 T8980 T8981 arg1Of terms,of
R6194 T8983 T8981 arg2Of loss,of
R6195 T8983 T8982 arg1Of loss,weight
R6196 T8985 T8984 arg1Of mice,A20myel-KO
R6197 T8985 T8986 arg1Of mice,showed
R6198 T8985 T8997 arg1Of mice,recovered
R6199 T8986 T8990 arg1Of showed,compared
R6200 T8986 T8996 arg1Of showed,and
R6201 T8989 T8986 arg2Of loss,showed
R6202 T8989 T8987 arg2Of loss,reduced
R6203 T8989 T8988 arg1Of loss,weight
R6204 T8991 T8990 arg2Of to,compared
R6205 T8995 T8991 arg2Of littermates,to
R6206 T8995 T8992 arg1Of littermates,wild
R6207 T8995 T8993 arg1Of littermates,type
R6208 T8995 T8994 arg1Of littermates,control
R6209 T8997 T8996 arg2Of recovered,and
R6210 T8997 T8998 arg1Of recovered,faster
R6211 T8997 T8999 arg1Of recovered,from
R6212 T9002 T8999 arg2Of challenge,from
R6213 T9002 T9000 arg1Of challenge,the
R6214 T9002 T9001 arg1Of challenge,viral
R6215 T9002 T9003 arg1Of challenge,(
R6216 T9005 T9003 arg2Of 3A,(
R6217 T9005 T9004 arg1Of 3A,figure
R6218 T9006 T9003 arg3Of ),(
R6219 T9011 T9009 arg1Of concentration,total
R6220 T9011 T9010 arg1Of concentration,protein
R6221 T9011 T9012 arg1Of concentration,in
R6222 T9011 T9015 arg1Of concentration,","
R6223 T9011 T9016 arg1Of concentration,which
R6224 T9011 T9017 arg1Of concentration,reflects
R6225 T9011 T9024 arg1Of concentration,was
R6226 T9011 T9025 arg2Of concentration,increased
R6227 T9011 T9032 arg1Of concentration,post
R6228 T9011 T9043 arg1Of concentration,was
R6229 T9011 T9045 arg1Of concentration,lower
R6230 T9014 T9012 arg2Of fluid,in
R6231 T9014 T9013 arg1Of fluid,BAL
R6232 T9017 T9023 arg1Of reflects,","
R6233 T9019 T9018 arg1Of damage,lung
R6234 T9019 T9020 arg1Of damage,and
R6235 T9020 T9017 arg2Of and,reflects
R6236 T9022 T9020 arg2Of leakage,and
R6237 T9022 T9021 arg1Of leakage,vascular
R6238 T9025 T9023 arg2Of increased,","
R6239 T9025 T9024 arg2Of increased,was
R6240 T9025 T9026 arg1Of increased,significantly
R6241 T9025 T9027 arg1Of increased,at
R6242 T9028 T9029 arg1Of 7,and
R6243 T9030 T9029 arg2Of 10,and
R6244 T9031 T9027 arg2Of days,at
R6245 T9031 T9028 arg1Of days,7
R6246 T9031 T9030 arg1Of days,10
R6247 T9032 T9034 arg1Of post,in
R6248 T9032 T9042 arg1Of post,and
R6249 T9033 T9032 arg2Of infection,post
R6250 T9037 T9038 arg1Of type,and
R6251 T9039 T9038 arg2Of A20myel-KO,and
R6252 T9040 T9034 arg2Of mice,in
R6253 T9040 T9035 arg1Of mice,both
R6254 T9040 T9036 arg1Of mice,wild
R6255 T9040 T9037 arg1Of mice,type
R6256 T9040 T9039 arg1Of mice,A20myel-KO
R6257 T9042 T9007 arg1Of and,Also
R6258 T9042 T9008 arg1Of and,","
R6259 T9042 T9041 arg1Of and,","
R6260 T9043 T9042 arg2Of was,and
R6261 T9045 T9043 arg2Of lower,was
R6262 T9045 T9044 arg1Of lower,slightly
R6263 T9045 T9046 arg1Of lower,in
R6264 T9048 T9046 arg2Of mice,in
R6265 T9048 T9047 arg1Of mice,A20myel-KO
R6266 T9048 T9049 arg1Of mice,(
R6267 T9050 T9049 arg2Of data,(
R6268 T9050 T9052 arg2Of data,shown
R6269 T9052 T9051 arg1Of shown,not
R6270 T9053 T9049 arg3Of ),(
R6271 T9056 T9057 arg1Of we,measured
R6272 T9057 T9054 arg1Of measured,Next
R6273 T9057 T9055 arg1Of measured,","
R6274 T9057 T9061 arg1Of measured,at
R6275 T9060 T9057 arg2Of titers,measured
R6276 T9060 T9058 arg1Of titers,pulmonary
R6277 T9060 T9059 arg1Of titers,viral
R6278 T9062 T9063 arg1Of 4,","
R6279 T9063 T9065 arg1Of ",",and
R6280 T9064 T9063 arg2Of 7,","
R6281 T9066 T9065 arg2Of 10,and
R6282 T9069 T9061 arg2Of infection,at
R6283 T9069 T9062 arg1Of infection,4
R6284 T9069 T9064 arg1Of infection,7
R6285 T9069 T9066 arg1Of infection,10
R6286 T9069 T9067 arg1Of infection,days
R6287 T9069 T9068 arg1Of infection,post
R6288 T9071 T9070 arg1Of differences,No
R6289 T9071 T9072 arg1Of differences,in
R6290 T9071 T9075 arg1Of differences,were
R6291 T9071 T9076 arg2Of differences,observed
R6292 T9074 T9072 arg2Of titers,in
R6293 T9074 T9073 arg1Of titers,viral
R6294 T9076 T9075 arg2Of observed,were
R6295 T9076 T9077 arg1Of observed,in
R6296 T9076 T9080 arg1Of observed,versus
R6297 T9076 T9084 arg1Of observed,at
R6298 T9079 T9077 arg2Of mice,in
R6299 T9079 T9078 arg1Of mice,A20myel-KO
R6300 T9083 T9080 arg2Of mice,versus
R6301 T9083 T9081 arg1Of mice,wild
R6302 T9083 T9082 arg1Of mice,type
R6303 T9086 T9087 arg1Of 4,and
R6304 T9088 T9087 arg2Of 7,and
R6305 T9090 T9084 arg2Of infection,at
R6306 T9090 T9085 arg1Of infection,day
R6307 T9090 T9086 arg1Of infection,4
R6308 T9090 T9088 arg1Of infection,7
R6309 T9090 T9089 arg1Of infection,post
R6310 T9095 T9093 arg2Of days,after
R6311 T9095 T9094 arg1Of days,10
R6312 T9099 T9097 arg1Of virus,almost
R6313 T9099 T9098 arg1Of virus,no
R6314 T9099 T9100 arg1Of virus,could
R6315 T9099 T9101 arg1Of virus,be
R6316 T9099 T9102 arg2Of virus,detected
R6317 T9102 T9091 arg1Of detected,However
R6318 T9102 T9092 arg1Of detected,","
R6319 T9102 T9093 arg1Of detected,after
R6320 T9102 T9096 arg1Of detected,","
R6321 T9102 T9100 arg2Of detected,could
R6322 T9102 T9101 arg2Of detected,be
R6323 T9102 T9103 arg1Of detected,in
R6324 T9102 T9109 arg1Of detected,while
R6325 T9105 T9103 arg2Of lungs,in
R6326 T9105 T9104 arg1Of lungs,the
R6327 T9105 T9106 arg1Of lungs,of
R6328 T9108 T9106 arg2Of mice,of
R6329 T9108 T9107 arg1Of mice,A20myel-KO
R6330 T9113 T9110 arg1Of particles,abundant
R6331 T9113 T9111 arg1Of particles,infectious
R6332 T9113 T9112 arg1Of particles,viral
R6333 T9113 T9114 arg1Of particles,could
R6334 T9113 T9116 arg1Of particles,be
R6335 T9113 T9117 arg2Of particles,isolated
R6336 T9117 T9109 arg2Of isolated,while
R6337 T9117 T9114 arg2Of isolated,could
R6338 T9117 T9115 arg1Of isolated,still
R6339 T9117 T9116 arg2Of isolated,be
R6340 T9117 T9118 arg1Of isolated,from
R6341 T9119 T9118 arg2Of lungs,from
R6342 T9119 T9120 arg1Of lungs,of
R6343 T9124 T9120 arg2Of mice,of
R6344 T9124 T9121 arg1Of mice,all
R6345 T9124 T9122 arg1Of mice,wild
R6346 T9124 T9123 arg1Of mice,type
R6347 T9124 T9125 arg1Of mice,(
R6348 T9127 T9125 arg2Of 3B,(
R6349 T9127 T9126 arg1Of 3B,figure
R6350 T9128 T9125 arg3Of ),(
R6351 T9129 T9130 arg1Of This,indicates
R6352 T9132 T9133 arg1Of loss,of
R6353 T9132 T9135 arg1Of loss,in
R6354 T9132 T9138 arg1Of loss,does
R6355 T9132 T9140 arg1Of loss,affect
R6356 T9132 T9145 arg1Of loss,contributes
R6357 T9134 T9133 arg2Of A20,of
R6358 T9137 T9135 arg2Of cells,in
R6359 T9137 T9136 arg1Of cells,myeloid
R6360 T9140 T9138 arg2Of affect,does
R6361 T9140 T9139 arg1Of affect,not
R6362 T9140 T9144 arg1Of affect,but
R6363 T9143 T9140 arg2Of replication,affect
R6364 T9143 T9141 arg1Of replication,early
R6365 T9143 T9142 arg1Of replication,viral
R6366 T9144 T9130 arg2Of but,indicates
R6367 T9144 T9131 arg1Of but,that
R6368 T9145 T9144 arg2Of contributes,but
R6369 T9145 T9146 arg1Of contributes,to
R6370 T9145 T9149 arg1Of contributes,at
R6371 T9145 T9152 arg1Of contributes,during
R6372 T9148 T9146 arg2Of clearance,to
R6373 T9148 T9147 arg1Of clearance,viral
R6374 T9151 T9149 arg2Of stages,at
R6375 T9151 T9150 arg1Of stages,later
R6376 T9153 T9152 arg2Of infection,during

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T11118 1101-1104 http://www.uniprot.org/uniprot/P21580 denotes A20
T11117 25-28 http://www.uniprot.org/uniprot/P21580 denotes A20

UBERON-AE

Id Subject Object Predicate Lexical cue
T8710 484-488 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung

GO-BP

Id Subject Object Predicate Lexical cue
T8815 1144-1161 http://purl.obolibrary.org/obo/GO_0019079 denotes viral replication
T8814 1144-1161 http://purl.obolibrary.org/obo/GO_0019058 denotes viral replication

GO-CC

Id Subject Object Predicate Lexical cue
T8865 1116-1121 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T8864 51-56 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T8727 1073-1230 Sentence denotes This indicates that loss of A20 in myeloid cells does not affect early viral replication but contributes to viral clearance at later stages during infection.
T8726 871-1072 Sentence denotes However, after 10 days, almost no virus could be detected in the lungs of A20myel-KO mice while abundant infectious viral particles could still be isolated from lungs of all wild type mice (figure 3B).
T8725 754-870 Sentence denotes No differences in viral titers were observed in A20myel-KO mice versus wild type mice at day 4 and 7 post infection.
T8724 677-753 Sentence denotes Next, we measured pulmonary viral titers at 4, 7 and 10 days post infection.
T8723 421-676 Sentence denotes Also, total protein concentration in BAL fluid, which reflects lung damage and vascular leakage, was increased significantly at 7 and 10 days post infection in both wild type and A20myel-KO mice, and was slightly lower in A20myel-KO mice (data not shown).
T8722 277-420 Sentence denotes A20myel-KO mice showed reduced weight loss compared to wild type control littermates and recovered faster from the viral challenge (figure 3A).
T8721 0-276 Sentence denotes To determine the role of A20 expression in myeloid cells during an IAV infection in vivo, we intranasally inoculated both A20myel-KO mice and control littermates with a sublethal dose of the mouse adapted IAV X-47 (H3N2) strain and monitored morbidity in terms of weight loss.
T111 0-276 Sentence denotes To determine the role of A20 expression in myeloid cells during an IAV infection in vivo, we intranasally inoculated both A20myel-KO mice and control littermates with a sublethal dose of the mouse adapted IAV X-47 (H3N2) strain and monitored morbidity in terms of weight loss.
T112 277-420 Sentence denotes A20myel-KO mice showed reduced weight loss compared to wild type control littermates and recovered faster from the viral challenge (figure 3A).
T113 421-676 Sentence denotes Also, total protein concentration in BAL fluid, which reflects lung damage and vascular leakage, was increased significantly at 7 and 10 days post infection in both wild type and A20myel-KO mice, and was slightly lower in A20myel-KO mice (data not shown).
T114 677-753 Sentence denotes Next, we measured pulmonary viral titers at 4, 7 and 10 days post infection.
T115 754-870 Sentence denotes No differences in viral titers were observed in A20myel-KO mice versus wild type mice at day 4 and 7 post infection.
T116 871-1072 Sentence denotes However, after 10 days, almost no virus could be detected in the lungs of A20myel-KO mice while abundant infectious viral particles could still be isolated from lungs of all wild type mice (figure 3B).
T117 1073-1230 Sentence denotes This indicates that loss of A20 in myeloid cells does not affect early viral replication but contributes to viral clearance at later stages during infection.

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T11422 25-28 Protein denotes A20
T11408 122-137 Protein denotes A20myel-KO mice
T11402 458-468 Entity denotes BAL fluid,
T11501 22-39 Gene_expression denotes of A20 expression
T11498 835-839 Protein denotes mice
T11494 458-461 Protein denotes BAL
T11492 1098-1104 Protein denotes of A20
T11491 1108-1121 Entity denotes myeloid cells
T11484 1038-1071 Protein denotes of all wild type mice (figure 3B)
T11482 802-817 Protein denotes A20myel-KO mice
T11478 643-675 Protein denotes A20myel-KO mice (data not shown)
T11475 433-468 Protein denotes protein concentration in BAL fluid,
T11469 956-960 Protein denotes mice
T11468 215-219 Entity denotes H3N2
T11457 600-615 Protein denotes A20myel-KO mice
T11449 43-56 Entity denotes myeloid cells
T11443 288-292 Protein denotes mice
R8459 T11422 T11501 themeOf A20,of A20 expression

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T10194 1027-1031 IN denotes from
T10193 1018-1026 VBN denotes isolated
T10192 1015-1017 VB denotes be
T10191 1009-1014 RB denotes still
T10190 1003-1008 MD denotes could
T10189 993-1002 NNS denotes particles
T10188 987-992 JJ denotes viral
T10187 976-986 JJ denotes infectious
T10186 967-975 JJ denotes abundant
T10185 961-966 IN denotes while
T10184 956-960 NNS denotes mice
T10183 945-955 JJ denotes A20myel-KO
T10182 942-944 IN denotes of
T10181 936-941 NNS denotes lungs
T10180 932-935 DT denotes the
T10179 929-931 IN denotes in
T10178 920-928 VBN denotes detected
T10177 917-919 VB denotes be
T10176 911-916 MD denotes could
T10175 905-910 NN denotes virus
T10174 902-904 DT denotes no
T10173 895-901 RB denotes almost
T10172 893-894 , denotes ,
T10171 889-893 NNS denotes days
T10170 886-888 CD denotes 10
T10169 880-885 IN denotes after
T10168 878-879 , denotes ,
T10167 871-878 RB denotes However
T10166 869-870 . denotes .
T10165 860-869 NN denotes infection
T10164 855-859 NN denotes post
T10163 853-854 CD denotes 7
T10162 849-852 CC denotes and
T10161 847-848 CD denotes 4
T10160 843-846 NN denotes day
T10159 840-842 IN denotes at
T10158 835-839 NNS denotes mice
T10157 830-834 NN denotes type
T10156 825-829 JJ denotes wild
T10155 818-824 CC denotes versus
T10154 813-817 NNS denotes mice
T10153 802-812 JJ denotes A20myel-KO
T10152 799-801 IN denotes in
T10151 790-798 VBN denotes observed
T10150 785-789 VBD denotes were
T10149 778-784 NNS denotes titers
T10148 772-777 JJ denotes viral
T10147 769-771 IN denotes in
T10146 757-768 NNS denotes differences
T10145 754-756 DT denotes No
T10144 752-753 . denotes .
T10143 743-752 NN denotes infection
T10142 738-742 NN denotes post
T10141 733-737 NNS denotes days
T10140 730-732 CD denotes 10
T10139 726-729 CC denotes and
T10138 724-725 CD denotes 7
T10137 722-723 , denotes ,
T10136 721-722 CD denotes 4
T10135 718-720 IN denotes at
T10134 711-717 NNS denotes titers
T10133 705-710 JJ denotes viral
T10132 695-704 JJ denotes pulmonary
T10131 686-694 VBD denotes measured
T10130 683-685 PRP denotes we
T10129 681-682 , denotes ,
T10128 677-681 JJ denotes Next
T10127 675-676 . denotes .
T10126 674-675 -RRB- denotes )
T10125 669-674 VBN denotes shown
T10124 665-668 RB denotes not
T10123 660-664 NNS denotes data
T10122 659-660 -LRB- denotes (
T10121 654-658 NNS denotes mice
T10120 643-653 JJ denotes A20myel-KO
T10119 640-642 IN denotes in
T10118 634-639 JJR denotes lower
T10117 625-633 RB denotes slightly
T10116 621-624 VBD denotes was
T10115 617-620 CC denotes and
T10114 615-616 , denotes ,
T10113 611-615 NNS denotes mice
T10112 600-610 JJ denotes A20myel-KO
T10111 596-599 CC denotes and
T10110 591-595 NN denotes type
T10109 586-590 JJ denotes wild
T10108 581-585 DT denotes both
T10107 578-580 IN denotes in
T10106 568-577 NN denotes infection
T10105 563-567 NN denotes post
T10104 558-562 NNS denotes days
T10103 555-557 CD denotes 10
T10102 551-554 CC denotes and
T10101 549-550 CD denotes 7
T10100 546-548 IN denotes at
T10099 532-545 RB denotes significantly
T10098 522-531 VBN denotes increased
T10097 518-521 VBD denotes was
T10096 516-517 , denotes ,
T10095 509-516 NN denotes leakage
T10094 500-508 JJ denotes vascular
T10093 496-499 CC denotes and
T10092 489-495 NN denotes damage
T10091 484-488 NN denotes lung
T10090 475-483 VBZ denotes reflects
T10089 469-474 WDT denotes which
T10088 467-468 , denotes ,
T10087 462-467 NN denotes fluid
T10086 458-461 NNP denotes BAL
T10085 455-457 IN denotes in
T10084 441-454 NN denotes concentration
T10083 433-440 NN denotes protein
T10082 427-432 JJ denotes total
T10081 425-426 , denotes ,
T10080 421-425 RB denotes Also
T10079 419-420 . denotes .
T10078 418-419 -RRB- denotes )
T10077 416-418 NNP denotes 3A
T10076 409-415 NN denotes figure
T10075 408-409 -LRB- denotes (
T10067 350-361 NNS denotes littermates
T10066 342-349 NN denotes control
T10065 337-341 NN denotes type
T10064 332-336 JJ denotes wild
T10063 329-331 TO denotes to
T10062 320-328 VBN denotes compared
T10061 315-319 NN denotes loss
T10060 308-314 NN denotes weight
T10059 300-307 VBN denotes reduced
T10058 293-299 VBD denotes showed
T10057 288-292 NNS denotes mice
T10056 277-287 JJ denotes A20myel-KO
T10055 275-276 . denotes .
T10054 271-275 NN denotes loss
T10053 264-270 NN denotes weight
T10052 261-263 IN denotes of
T10051 255-260 NNS denotes terms
T10050 252-254 IN denotes in
T10049 242-251 NN denotes morbidity
T10048 232-241 VBD denotes monitored
T10047 228-231 CC denotes and
T10046 221-227 NN denotes strain
T10045 219-220 -RRB- denotes )
T10044 215-219 NNP denotes H3N2
T10043 214-215 -LRB- denotes (
T10042 209-213 NNP denotes X-47
T10041 205-208 NNP denotes IAV
T10040 197-204 VBD denotes adapted
T10039 191-196 NN denotes mouse
T10038 187-190 DT denotes the
T10037 184-186 IN denotes of
T10036 179-183 NN denotes dose
T10035 169-178 JJ denotes sublethal
T10034 167-168 DT denotes a
T10033 162-166 IN denotes with
T10032 150-161 NNS denotes littermates
T10031 142-149 NN denotes control
T10030 138-141 CC denotes and
T10029 133-137 NNS denotes mice
T10028 122-132 JJ denotes A20myel-KO
T10027 117-121 DT denotes both
T10026 106-116 VBD denotes inoculated
T10025 93-105 RB denotes intranasally
T10024 90-92 PRP denotes we
T10023 88-89 , denotes ,
T10022 84-88 NN denotes vivo
T10021 81-83 IN denotes in
T10020 71-80 NN denotes infection
T10019 67-70 NNP denotes IAV
T10018 64-66 DT denotes an
T10017 57-63 IN denotes during
T10016 51-56 NNS denotes cells
T10015 43-50 JJ denotes myeloid
T10014 40-42 IN denotes in
T10013 29-39 NN denotes expression
T10012 25-28 NNP denotes A20
T10011 22-24 IN denotes of
T10010 17-21 NN denotes role
T10009 13-16 DT denotes the
T10008 3-12 VB denotes determine
T10007 0-2 TO denotes To
T10231 1229-1230 . denotes .
T10230 1220-1229 NN denotes infection
T10229 1213-1219 IN denotes during
T10228 1206-1212 NNS denotes stages
T10227 1200-1205 JJ denotes later
T10226 1197-1199 IN denotes at
T10225 1187-1196 NN denotes clearance
T10224 1181-1186 JJ denotes viral
T10223 1178-1180 TO denotes to
T10222 1166-1177 VBZ denotes contributes
T10221 1162-1165 CC denotes but
T10220 1150-1161 NN denotes replication
T10219 1144-1149 JJ denotes viral
T10218 1138-1143 JJ denotes early
T10217 1131-1137 VB denotes affect
T10216 1127-1130 RB denotes not
T10215 1122-1126 VBZ denotes does
T10214 1116-1121 NNS denotes cells
T10213 1108-1115 JJ denotes myeloid
T10212 1105-1107 IN denotes in
T10211 1101-1104 NNP denotes A20
T10210 1098-1100 IN denotes of
T10209 1093-1097 NN denotes loss
T10208 1088-1092 IN denotes that
T10207 1078-1087 VBZ denotes indicates
T10206 1073-1077 DT denotes This
T10205 1071-1072 . denotes .
T10204 1070-1071 -RRB- denotes )
T10203 1068-1070 NN denotes 3B
T10202 1061-1067 NN denotes figure
T10201 1060-1061 -LRB- denotes (
T10200 1055-1059 NNS denotes mice
T10199 1050-1054 NN denotes type
T10198 1045-1049 JJ denotes wild
T10197 1041-1044 DT denotes all
T10196 1038-1040 IN denotes of
T10195 1032-1037 NNS denotes lungs
T10069 366-375 VBD denotes recovered
T10068 362-365 CC denotes and
T10074 398-407 NN denotes challenge
T10073 392-397 JJ denotes viral
T10072 388-391 DT denotes the
T10071 383-387 IN denotes from
T10070 376-382 RBR denotes faster
R7255 T10007 T10008 aux To,determine
R7257 T10009 T10010 det the,role
R7258 T10010 T10008 dobj role,determine
R7259 T10011 T10010 prep of,role
R7260 T10012 T10013 compound A20,expression
R7261 T10013 T10011 pobj expression,of
R7262 T10014 T10013 prep in,expression
R7263 T10015 T10016 amod myeloid,cells
R7264 T10016 T10014 pobj cells,in
R7265 T10017 T10010 prep during,role
R7266 T10018 T10020 det an,infection
R7267 T10019 T10020 compound IAV,infection
R7268 T10020 T10017 pobj infection,during
R7269 T10021 T10020 prep in,infection
R7270 T10022 T10021 pobj vivo,in
R7271 T10023 T10026 punct ",",inoculated
R7272 T10024 T10026 nsubj we,inoculated
R7273 T10025 T10026 advmod intranasally,inoculated
R7274 T10026 T10026 ROOT inoculated,inoculated
R7275 T10027 T10029 det both,mice
R7276 T10028 T10029 amod A20myel-KO,mice
R7277 T10029 T10026 dobj mice,inoculated
R7278 T10030 T10029 cc and,mice
R7279 T10031 T10032 compound control,littermates
R7280 T10032 T10029 conj littermates,mice
R7281 T10033 T10026 prep with,inoculated
R7282 T10034 T10036 det a,dose
R7283 T10035 T10036 amod sublethal,dose
R7284 T10036 T10033 pobj dose,with
R7285 T10037 T10036 prep of,dose
R7286 T10038 T10039 det the,mouse
R7287 T10039 T10037 pobj mouse,of
R7288 T10040 T10026 conj adapted,inoculated
R7289 T10041 T10042 compound IAV,X-47
R7290 T10042 T10040 dobj X-47,adapted
R7291 T10043 T10044 punct (,H3N2
R7292 T10044 T10042 appos H3N2,X-47
R7293 T10045 T10042 punct ),X-47
R7294 T10046 T10040 dobj strain,adapted
R7295 T10047 T10040 cc and,adapted
R7296 T10048 T10040 conj monitored,adapted
R7297 T10049 T10048 dobj morbidity,monitored
R7298 T10050 T10048 prep in,monitored
R7299 T10051 T10050 pobj terms,in
R7300 T10052 T10051 prep of,terms
R7301 T10053 T10054 compound weight,loss
R7302 T10054 T10052 pobj loss,of
R7303 T10055 T10026 punct .,inoculated
R7304 T10056 T10057 amod A20myel-KO,mice
R7305 T10057 T10058 nsubj mice,showed
R7306 T10058 T10058 ROOT showed,showed
R7307 T10059 T10061 amod reduced,loss
R7308 T10060 T10061 compound weight,loss
R7309 T10061 T10058 dobj loss,showed
R7310 T10062 T10058 prep compared,showed
R7311 T10063 T10062 prep to,compared
R7312 T10064 T10066 amod wild,control
R7313 T10065 T10066 compound type,control
R7314 T10066 T10067 compound control,littermates
R7315 T10067 T10063 pobj littermates,to
R7316 T10068 T10062 cc and,compared
R7317 T10069 T10062 conj recovered,compared
R7318 T10070 T10069 advmod faster,recovered
R7319 T10071 T10070 prep from,faster
R7320 T10072 T10074 det the,challenge
R7321 T10073 T10074 amod viral,challenge
R7322 T10074 T10071 pobj challenge,from
R7323 T10075 T10076 punct (,figure
R7324 T10076 T10077 compound figure,3A
R7325 T10077 T10070 appos 3A,faster
R7326 T10078 T10070 punct ),faster
R7327 T10079 T10058 punct .,showed
R7328 T10080 T10098 advmod Also,increased
R7329 T10081 T10098 punct ",",increased
R7330 T10082 T10084 amod total,concentration
R7331 T10083 T10084 compound protein,concentration
R7332 T10084 T10098 nsubjpass concentration,increased
R7333 T10085 T10084 prep in,concentration
R7334 T10086 T10087 compound BAL,fluid
R7335 T10087 T10085 pobj fluid,in
R7336 T10088 T10087 punct ",",fluid
R7337 T10089 T10090 nsubj which,reflects
R7338 T10090 T10087 relcl reflects,fluid
R7339 T10091 T10092 compound lung,damage
R7340 T10092 T10090 dobj damage,reflects
R7341 T10093 T10092 cc and,damage
R7342 T10094 T10095 amod vascular,leakage
R7343 T10095 T10092 conj leakage,damage
R7344 T10096 T10098 punct ",",increased
R7345 T10097 T10098 auxpass was,increased
R7346 T10098 T10098 ROOT increased,increased
R7347 T10099 T10098 advmod significantly,increased
R7348 T10100 T10098 prep at,increased
R7349 T10101 T10104 nummod 7,days
R7350 T10102 T10101 cc and,7
R7351 T10103 T10101 conj 10,7
R7352 T10104 T10105 compound days,post
R7353 T10105 T10106 compound post,infection
R7354 T10106 T10100 pobj infection,at
R7355 T10107 T10098 prep in,increased
R7356 T10108 T10110 det both,type
R7357 T10109 T10110 amod wild,type
R7358 T10110 T10107 pobj type,in
R7359 T10111 T10110 cc and,type
R7360 T10112 T10113 amod A20myel-KO,mice
R7361 T10113 T10110 conj mice,type
R7362 T10114 T10098 punct ",",increased
R7363 T10115 T10098 cc and,increased
R7364 T10116 T10098 conj was,increased
R7365 T10117 T10118 advmod slightly,lower
R7366 T10118 T10116 acomp lower,was
R7367 T10119 T10116 prep in,was
R7368 T10120 T10121 amod A20myel-KO,mice
R7369 T10121 T10119 pobj mice,in
R7370 T10122 T10123 punct (,data
R7371 T10123 T10121 appos data,mice
R7372 T10124 T10125 neg not,shown
R7373 T10125 T10123 acl shown,data
R7374 T10126 T10123 punct ),data
R7375 T10127 T10098 punct .,increased
R7376 T10128 T10131 advmod Next,measured
R7377 T10129 T10131 punct ",",measured
R7378 T10130 T10131 nsubj we,measured
R7379 T10131 T10131 ROOT measured,measured
R7380 T10132 T10134 amod pulmonary,titers
R7381 T10133 T10134 amod viral,titers
R7382 T10134 T10131 dobj titers,measured
R7383 T10135 T10131 prep at,measured
R7384 T10136 T10135 pobj 4,at
R7385 T10137 T10131 punct ",",measured
R7386 T10138 T10141 nummod 7,days
R7387 T10139 T10138 cc and,7
R7388 T10140 T10138 conj 10,7
R7389 T10141 T10143 npadvmod days,infection
R7390 T10142 T10143 compound post,infection
R7391 T10143 T10131 advmod infection,measured
R7392 T10144 T10131 punct .,measured
R7393 T10145 T10146 det No,differences
R7394 T10146 T10151 nsubjpass differences,observed
R7395 T10147 T10146 prep in,differences
R7396 T10148 T10149 amod viral,titers
R7397 T10149 T10147 pobj titers,in
R7398 T10150 T10151 auxpass were,observed
R7399 T10151 T10151 ROOT observed,observed
R7400 T10152 T10151 prep in,observed
R7401 T10153 T10154 amod A20myel-KO,mice
R7402 T10154 T10152 pobj mice,in
R7403 T10155 T10154 cc versus,mice
R7404 T10156 T10158 amod wild,mice
R7405 T10157 T10158 compound type,mice
R7406 T10158 T10154 conj mice,mice
R7407 T10159 T10151 prep at,observed
R7408 T10160 T10159 pobj day,at
R7409 T10161 T10160 nummod 4,day
R7410 T10162 T10151 cc and,observed
R7411 T10163 T10165 nummod 7,infection
R7412 T10164 T10165 compound post,infection
R7413 T10165 T10151 conj infection,observed
R7414 T10166 T10151 punct .,observed
R7415 T10167 T10178 advmod However,detected
R7416 T10168 T10178 punct ",",detected
R7417 T10169 T10178 prep after,detected
R7418 T10170 T10171 nummod 10,days
R7419 T10171 T10169 pobj days,after
R7420 T10172 T10178 punct ",",detected
R7421 T10173 T10174 advmod almost,no
R7422 T10174 T10175 nummod no,virus
R7423 T10175 T10178 nsubjpass virus,detected
R7424 T10176 T10178 aux could,detected
R7425 T10177 T10178 auxpass be,detected
R7426 T10178 T10178 ROOT detected,detected
R7427 T10179 T10178 prep in,detected
R7428 T10180 T10181 det the,lungs
R7429 T10181 T10179 pobj lungs,in
R7430 T10182 T10181 prep of,lungs
R7431 T10183 T10184 amod A20myel-KO,mice
R7441 T10193 T10178 advcl isolated,detected
R7442 T10194 T10193 prep from,isolated
R7443 T10195 T10194 pobj lungs,from
R7444 T10196 T10195 prep of,lungs
R7445 T10197 T10200 det all,mice
R7446 T10198 T10200 amod wild,mice
R7447 T10199 T10200 compound type,mice
R7448 T10200 T10196 pobj mice,of
R7449 T10201 T10203 punct (,3B
R7450 T10202 T10203 compound figure,3B
R7451 T10203 T10200 appos 3B,mice
R7452 T10204 T10200 punct ),mice
R7453 T10205 T10178 punct .,detected
R7454 T10206 T10207 nsubj This,indicates
R7455 T10207 T10207 ROOT indicates,indicates
R7456 T10208 T10217 mark that,affect
R7457 T10209 T10217 nsubj loss,affect
R7458 T10210 T10209 prep of,loss
R7459 T10211 T10210 pobj A20,of
R7460 T10212 T10209 prep in,loss
R7461 T10213 T10214 amod myeloid,cells
R7462 T10214 T10212 pobj cells,in
R7463 T10215 T10217 aux does,affect
R7464 T10216 T10217 neg not,affect
R7465 T10217 T10207 ccomp affect,indicates
R7466 T10218 T10220 amod early,replication
R7467 T10219 T10220 amod viral,replication
R7468 T10220 T10217 dobj replication,affect
R7469 T10221 T10217 cc but,affect
R7470 T10222 T10207 conj contributes,indicates
R7471 T10223 T10222 prep to,contributes
R7472 T10224 T10225 amod viral,clearance
R7473 T10225 T10223 pobj clearance,to
R7474 T10226 T10222 prep at,contributes
R7475 T10227 T10228 amod later,stages
R7476 T10228 T10226 pobj stages,at
R7477 T10229 T10222 prep during,contributes
R7478 T10230 T10229 pobj infection,during
R7479 T10231 T10207 punct .,indicates
R7432 T10184 T10182 pobj mice,of
R7433 T10185 T10193 mark while,isolated
R7434 T10186 T10189 amod abundant,particles
R7435 T10187 T10189 amod infectious,particles
R7436 T10188 T10189 amod viral,particles
R7437 T10189 T10193 nsubjpass particles,isolated
R7438 T10190 T10193 aux could,isolated
R7439 T10191 T10193 advmod still,isolated
R7440 T10192 T10193 auxpass be,isolated

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T11240 17-21 Regulation denotes role
T11239 29-39 Gene_expression denotes expression
T11238 25-28 Protein denotes A20
R8398 T11238 T11239 themeOf A20,expression
R8399 T11239 T11240 themeOf expression,role

testone

Id Subject Object Predicate Lexical cue
T8621 1093-1097 Negative_regulation denotes loss
T8620 315-319 Negative_regulation denotes loss
T8619 29-39 Gene_expression denotes expression
T8618 17-21 Regulation denotes role
R6095 T8619 T8618 themeOf expression,role