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PMC:329117 / 32660-34319 JSONTXT

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Id Subject Object Predicate Lexical cue
T9427 0-3 PRP$ denotes Our
T9428 4-9 NN denotes study
T9429 10-18 VBZ denotes provides
T9430 19-21 RB denotes at
T9431 22-27 RBS denotes least
T9432 28-35 JJ denotes partial
T9433 36-40 NNS denotes data
T9434 41-46 IN denotes about
T9435 47-50 DT denotes the
T9436 71-81 NNS denotes structures
T9437 51-59 JJ denotes upstream
T9438 60-70 NN denotes transcript
T9439 82-84 IN denotes of
T9440 85-89 IN denotes over
T9441 90-93 CD denotes 300
T9442 113-118 NNS denotes genes
T9443 94-103 JJ denotes olfactory
T9444 104-112 NN denotes receptor
T9445 118-119 . denotes .
T9446 119-345 sentence denotes These data provide tentative locations of a large set of promoter regions, allowing computational searches for shared sequence motifs that might be involved in the intriguing transcriptional regulation of olfactory receptors.
T9447 120-125 DT denotes These
T9448 126-130 NNS denotes data
T9449 131-138 VBP denotes provide
T9450 139-148 JJ denotes tentative
T9451 149-158 NNS denotes locations
T9452 159-161 IN denotes of
T9453 162-163 DT denotes a
T9454 170-173 NN denotes set
T9455 164-169 JJ denotes large
T9456 174-176 IN denotes of
T9457 177-185 NN denotes promoter
T9458 186-193 NNS denotes regions
T9459 193-195 , denotes ,
T9460 195-203 VBG denotes allowing
T9461 204-217 JJ denotes computational
T9462 218-226 NNS denotes searches
T9463 227-230 IN denotes for
T9464 231-237 VBN denotes shared
T9465 247-253 NNS denotes motifs
T9466 238-246 NN denotes sequence
T9467 254-258 WDT denotes that
T9468 268-276 VBN denotes involved
T9469 259-264 MD denotes might
T9470 265-267 VB denotes be
T9471 277-279 IN denotes in
T9472 280-283 DT denotes the
T9473 311-321 NN denotes regulation
T9474 284-294 JJ denotes intriguing
T9475 295-310 JJ denotes transcriptional
T9476 322-324 IN denotes of
T9477 325-334 JJ denotes olfactory
T9478 335-344 NNS denotes receptors
T9479 344-345 . denotes .
T9480 345-463 sentence denotes However, given that not all cDNAs are full-length clones, some of these candidates will not be true promoter regions.
T9481 346-353 RB denotes However
T9482 438-440 VB denotes be
T9483 353-355 , denotes ,
T9484 355-360 VBN denotes given
T9485 361-365 IN denotes that
T9486 380-383 VBP denotes are
T9487 366-369 RB denotes not
T9488 374-379 NNS denotes cDNAs
T9489 370-373 DT denotes all
T9490 384-388 JJ denotes full
T9491 389-395 NN denotes length
T9492 388-389 HYPH denotes -
T9493 396-402 NNS denotes clones
T9494 402-404 , denotes ,
T9495 404-408 DT denotes some
T9496 409-411 IN denotes of
T9497 412-417 DT denotes these
T9498 418-428 NNS denotes candidates
T9499 429-433 MD denotes will
T9500 434-437 RB denotes not
T9501 441-445 JJ denotes true
T9502 455-462 NNS denotes regions
T9503 446-454 NN denotes promoter
T9504 462-463 . denotes .
T9505 463-642 sentence denotes The 5' UTR sequences we obtained will also aid in the design of experimental probes, for example, for in situ hybridizations or to immobilize on an olfactory receptor microarray.
T9506 464-467 DT denotes The
T9507 475-484 NNS denotes sequences
T9508 468-469 CD denotes 5
T9509 471-474 NN denotes UTR
T9510 469-470 SYM denotes '
T9511 507-510 VB denotes aid
T9512 485-487 PRP denotes we
T9513 488-496 VBD denotes obtained
T9514 497-501 MD denotes will
T9515 502-506 RB denotes also
T9516 511-513 IN denotes in
T9517 514-517 DT denotes the
T9518 518-524 NN denotes design
T9519 525-527 IN denotes of
T9520 528-540 JJ denotes experimental
T9521 541-547 NNS denotes probes
T9522 547-549 , denotes ,
T9523 549-552 IN denotes for
T9524 553-560 NN denotes example
T9525 560-562 , denotes ,
T9526 562-565 IN denotes for
T9527 566-568 FW denotes in
T9528 569-573 FW denotes situ
T9529 574-588 NNS denotes hybridizations
T9530 589-591 CC denotes or
T9531 592-594 TO denotes to
T9532 595-605 VB denotes immobilize
T9533 606-608 IN denotes on
T9534 609-611 DT denotes an
T9535 631-641 NN denotes microarray
T9536 612-621 JJ denotes olfactory
T9537 622-630 NN denotes receptor
T9538 641-642 . denotes .
T9539 642-748 sentence denotes One of the challenges of such an array will be to design unique probes with which to represent each gene.
T9540 643-646 CD denotes One
T9541 687-689 VB denotes be
T9542 647-649 IN denotes of
T9543 650-653 DT denotes the
T9544 654-664 NNS denotes challenges
T9545 665-667 IN denotes of
T9546 668-672 PDT denotes such
T9547 676-681 NN denotes array
T9548 673-675 DT denotes an
T9549 682-686 MD denotes will
T9550 690-692 TO denotes to
T9551 693-699 VB denotes design
T9552 700-706 JJ denotes unique
T9553 707-713 NNS denotes probes
T9554 714-718 IN denotes with
T9555 728-737 VB denotes represent
T9556 719-724 WDT denotes which
T9557 725-727 TO denotes to
T9558 738-742 DT denotes each
T9559 743-747 NN denotes gene
T9560 747-748 . denotes .
T9561 748-849 sentence denotes Often, the coding region of olfactory receptors is highly similar between recently duplicated genes.
T9562 749-754 RB denotes Often
T9563 797-799 VBZ denotes is
T9564 754-756 , denotes ,
T9565 756-759 DT denotes the
T9566 767-773 NN denotes region
T9567 760-766 VBG denotes coding
T9568 774-776 IN denotes of
T9569 777-786 JJ denotes olfactory
T9570 787-796 NNS denotes receptors
T9571 800-806 RB denotes highly
T9572 807-814 JJ denotes similar
T9573 815-822 IN denotes between
T9574 823-831 RB denotes recently
T9575 832-842 VBN denotes duplicated
T9576 843-848 NNS denotes genes
T9577 848-849 . denotes .
T9578 849-998 sentence denotes Many pairs of similar olfactory receptors show more sequence divergence in the UTRs than the protein-coding region (J.Y., unpublished observations).
T9579 850-854 JJ denotes Many
T9580 855-860 NNS denotes pairs
T9581 892-896 VBP denotes show
T9582 861-863 IN denotes of
T9583 864-871 JJ denotes similar
T9584 882-891 NNS denotes receptors
T9585 872-881 JJ denotes olfactory
T9586 897-901 JJR denotes more
T9587 911-921 NN denotes divergence
T9588 902-910 NN denotes sequence
T9589 922-924 IN denotes in
T9590 925-928 DT denotes the
T9591 929-933 NNS denotes UTRs
T9592 934-938 IN denotes than
T9593 939-942 DT denotes the
T9594 958-964 NN denotes region
T9595 943-950 NN denotes protein
T9596 951-957 VBG denotes coding
T9597 950-951 HYPH denotes -
T9598 965-966 -LRB- denotes (
T9599 966-970 NNP denotes J.Y.
T9600 970-972 , denotes ,
T9601 972-983 JJ denotes unpublished
T9602 984-996 NNS denotes observations
T9603 996-997 -RRB- denotes )
T9604 997-998 . denotes .
T9605 998-1158 sentence denotes The UTRs would therefore make a better choice of sequence from which to design unique oligonucleotides to distinguish closely related olfactory receptor genes.
T9606 999-1002 DT denotes The
T9607 1003-1007 NNS denotes UTRs
T9608 1024-1028 VB denotes make
T9609 1008-1013 MD denotes would
T9610 1014-1023 RB denotes therefore
T9611 1029-1030 DT denotes a
T9612 1038-1044 NN denotes choice
T9613 1031-1037 JJR denotes better
T9614 1045-1047 IN denotes of
T9615 1048-1056 NN denotes sequence
T9616 1057-1061 IN denotes from
T9617 1071-1077 VB denotes design
T9618 1062-1067 WDT denotes which
T9619 1068-1070 TO denotes to
T9620 1078-1084 JJ denotes unique
T9621 1085-1101 NNS denotes oligonucleotides
T9622 1102-1104 TO denotes to
T9623 1105-1116 VB denotes distinguish
T9624 1117-1124 RB denotes closely
T9625 1125-1132 JJ denotes related
T9626 1152-1157 NNS denotes genes
T9627 1133-1142 JJ denotes olfactory
T9628 1143-1151 NN denotes receptor
T9629 1157-1158 . denotes .
T9630 1158-1349 sentence denotes Locations of these regions in genomic sequence are difficult to predict - our study provides 5' UTR sequences of 343 genes and the approximate 3' UTR length for 399 olfactory receptor genes.
T9631 1159-1168 NNS denotes Locations
T9632 1206-1209 VBP denotes are
T9633 1169-1171 IN denotes of
T9634 1172-1177 DT denotes these
T9635 1178-1185 NNS denotes regions
T9636 1186-1188 IN denotes in
T9637 1189-1196 JJ denotes genomic
T9638 1197-1205 NN denotes sequence
T9639 1243-1251 VBZ denotes provides
T9640 1210-1219 JJ denotes difficult
T9641 1220-1222 TO denotes to
T9642 1223-1230 VB denotes predict
T9643 1231-1232 : denotes -
T9644 1233-1236 PRP$ denotes our
T9645 1237-1242 NN denotes study
T9646 1252-1253 CD denotes 5
T9647 1255-1258 NN denotes UTR
T9648 1253-1254 SYM denotes '
T9649 1259-1268 NNS denotes sequences
T9650 1269-1271 IN denotes of
T9651 1272-1275 CD denotes 343
T9652 1276-1281 NNS denotes genes
T9653 1282-1285 CC denotes and
T9654 1286-1289 DT denotes the
T9655 1309-1315 NN denotes length
T9656 1290-1301 JJ denotes approximate
T9657 1302-1303 CD denotes 3
T9658 1305-1308 NN denotes UTR
T9659 1303-1304 SYM denotes '
T9660 1316-1319 IN denotes for
T9661 1320-1323 CD denotes 399
T9662 1343-1348 NNS denotes genes
T9663 1324-1333 JJ denotes olfactory
T9664 1334-1342 NN denotes receptor
T9665 1348-1349 . denotes .
T9666 1349-1659 sentence denotes Probe design must also account for the multiple transcriptional isoforms observed for many olfactory receptors - depending on the question being asked, probes could be designed in shared sequence to determine the total level of all isoforms, or in unique exons to measure the level of each isoform separately.
T9667 1350-1355 NN denotes Probe
T9668 1356-1362 NN denotes design
T9669 1373-1380 VB denotes account
T9670 1363-1367 MD denotes must
T9671 1368-1372 RB denotes also
T9672 1518-1526 VBN denotes designed
T9673 1381-1384 IN denotes for
T9674 1385-1388 DT denotes the
T9675 1414-1422 NNS denotes isoforms
T9676 1389-1397 JJ denotes multiple
T9677 1398-1413 JJ denotes transcriptional
T9678 1423-1431 VBN denotes observed
T9679 1432-1435 IN denotes for
T9680 1436-1440 JJ denotes many
T9681 1451-1460 NNS denotes receptors
T9682 1441-1450 JJ denotes olfactory
T9683 1461-1462 : denotes -
T9684 1463-1472 VBG denotes depending
T9685 1473-1475 IN denotes on
T9686 1476-1479 DT denotes the
T9687 1480-1488 NN denotes question
T9688 1489-1494 VBG denotes being
T9689 1495-1500 VBD denotes asked
T9690 1500-1502 , denotes ,
T9691 1502-1508 NNS denotes probes
T9692 1509-1514 MD denotes could
T9693 1515-1517 VB denotes be
T9694 1527-1529 IN denotes in
T9695 1530-1536 VBN denotes shared
T9696 1537-1545 NN denotes sequence
T9697 1546-1548 TO denotes to
T9698 1549-1558 VB denotes determine
T9699 1559-1562 DT denotes the
T9700 1569-1574 NN denotes level
T9701 1563-1568 JJ denotes total
T9702 1575-1577 IN denotes of
T9703 1578-1581 DT denotes all
T9704 1582-1590 NNS denotes isoforms
T9705 1590-1592 , denotes ,
T9706 1592-1594 CC denotes or
T9707 1595-1597 IN denotes in
T9708 1598-1604 JJ denotes unique
T9709 1605-1610 NNS denotes exons
T9710 1611-1613 TO denotes to
T9711 1614-1621 VB denotes measure
T9712 1622-1625 DT denotes the
T9713 1626-1631 NN denotes level
T9714 1632-1634 IN denotes of
T9715 1635-1639 DT denotes each
T9716 1640-1647 NN denotes isoform
T9717 1648-1658 RB denotes separately
T9718 1658-1659 . denotes .
R5603 T9427 T9428 poss Our,study
R5604 T9428 T9429 nsubj study,provides
R5605 T9430 T9431 advmod at,least
R5606 T9431 T9432 advmod least,partial
R5607 T9432 T9433 amod partial,data
R5608 T9433 T9429 dobj data,provides
R5609 T9434 T9433 prep about,data
R5610 T9435 T9436 det the,structures
R5611 T9436 T9434 pobj structures,about
R5612 T9437 T9436 amod upstream,structures
R5613 T9438 T9436 compound transcript,structures
R5614 T9439 T9436 prep of,structures
R5615 T9440 T9441 quantmod over,300
R5616 T9441 T9442 nummod 300,genes
R5617 T9442 T9439 pobj genes,of
R5618 T9443 T9444 amod olfactory,receptor
R5619 T9444 T9442 compound receptor,genes
R5620 T9445 T9429 punct .,provides
R5621 T9447 T9448 det These,data
R5622 T9448 T9449 nsubj data,provide
R5623 T9450 T9451 amod tentative,locations
R5624 T9451 T9449 dobj locations,provide
R5625 T9452 T9451 prep of,locations
R5626 T9453 T9454 det a,set
R5627 T9454 T9452 pobj set,of
R5628 T9455 T9454 amod large,set
R5629 T9456 T9454 prep of,set
R5630 T9457 T9458 compound promoter,regions
R5631 T9458 T9456 pobj regions,of
R5632 T9459 T9449 punct ", ",provide
R5633 T9460 T9449 advcl allowing,provide
R5634 T9461 T9462 amod computational,searches
R5635 T9462 T9460 dobj searches,allowing
R5636 T9463 T9462 prep for,searches
R5637 T9464 T9465 amod shared,motifs
R5638 T9465 T9463 pobj motifs,for
R5639 T9466 T9465 compound sequence,motifs
R5640 T9467 T9468 dep that,involved
R5641 T9468 T9465 relcl involved,motifs
R5642 T9469 T9468 aux might,involved
R5643 T9470 T9468 auxpass be,involved
R5644 T9471 T9468 prep in,involved
R5645 T9472 T9473 det the,regulation
R5646 T9473 T9471 pobj regulation,in
R5647 T9474 T9473 amod intriguing,regulation
R5648 T9475 T9473 amod transcriptional,regulation
R5649 T9476 T9473 prep of,regulation
R5650 T9477 T9478 amod olfactory,receptors
R5651 T9478 T9476 pobj receptors,of
R5652 T9479 T9449 punct .,provide
R5653 T9481 T9482 advmod However,be
R5654 T9483 T9482 punct ", ",be
R5655 T9484 T9482 prep given,be
R5656 T9485 T9486 mark that,are
R5657 T9486 T9484 pcomp are,given
R5658 T9487 T9488 neg not,cDNAs
R5659 T9488 T9486 nsubj cDNAs,are
R5660 T9489 T9488 det all,cDNAs
R5661 T9490 T9491 amod full,length
R5662 T9491 T9493 compound length,clones
R5663 T9492 T9491 punct -,length
R5664 T9493 T9486 attr clones,are
R5665 T9494 T9482 punct ", ",be
R5666 T9495 T9482 nsubj some,be
R5667 T9496 T9495 prep of,some
R5668 T9497 T9498 det these,candidates
R5669 T9498 T9496 pobj candidates,of
R5670 T9499 T9482 aux will,be
R5671 T9500 T9482 neg not,be
R5672 T9501 T9502 amod true,regions
R5673 T9502 T9482 attr regions,be
R5674 T9503 T9502 compound promoter,regions
R5675 T9504 T9482 punct .,be
R5676 T9506 T9507 det The,sequences
R5677 T9507 T9511 nsubj sequences,aid
R5678 T9508 T9509 nummod 5,UTR
R5679 T9509 T9507 compound UTR,sequences
R5680 T9510 T9508 punct ',5
R5681 T9512 T9513 nsubj we,obtained
R5682 T9513 T9507 advcl obtained,sequences
R5683 T9514 T9511 aux will,aid
R5684 T9515 T9511 advmod also,aid
R5685 T9516 T9511 prep in,aid
R5686 T9517 T9518 det the,design
R5687 T9518 T9516 pobj design,in
R5688 T9519 T9518 prep of,design
R5689 T9520 T9521 amod experimental,probes
R5690 T9521 T9519 pobj probes,of
R5691 T9522 T9511 punct ", ",aid
R5692 T9523 T9511 prep for,aid
R5693 T9524 T9523 pobj example,for
R5694 T9525 T9523 punct ", ",for
R5695 T9526 T9523 conj for,for
R5696 T9527 T9528 advmod in,situ
R5697 T9528 T9529 amod situ,hybridizations
R5698 T9529 T9526 pobj hybridizations,for
R5699 T9530 T9526 cc or,for
R5700 T9531 T9532 aux to,immobilize
R5701 T9532 T9526 conj immobilize,for
R5702 T9533 T9532 prep on,immobilize
R5703 T9534 T9535 det an,microarray
R5704 T9535 T9533 pobj microarray,on
R5705 T9536 T9537 amod olfactory,receptor
R5706 T9537 T9535 compound receptor,microarray
R5707 T9538 T9511 punct .,aid
R5708 T9540 T9541 nsubj One,be
R5709 T9542 T9540 prep of,One
R5710 T9543 T9544 det the,challenges
R5711 T9544 T9542 pobj challenges,of
R5712 T9545 T9544 prep of,challenges
R5713 T9546 T9547 predet such,array
R5714 T9547 T9545 pobj array,of
R5715 T9548 T9547 det an,array
R5716 T9549 T9541 aux will,be
R5717 T9550 T9551 aux to,design
R5718 T9551 T9541 xcomp design,be
R5719 T9552 T9553 amod unique,probes
R5720 T9553 T9551 dobj probes,design
R5721 T9554 T9555 prep with,represent
R5722 T9555 T9553 relcl represent,probes
R5723 T9556 T9554 pobj which,with
R5724 T9557 T9555 aux to,represent
R5725 T9558 T9559 det each,gene
R5726 T9559 T9555 dobj gene,represent
R5727 T9560 T9541 punct .,be
R5728 T9562 T9563 advmod Often,is
R5729 T9564 T9563 punct ", ",is
R5730 T9565 T9566 det the,region
R5731 T9566 T9563 nsubj region,is
R5732 T9567 T9566 amod coding,region
R5733 T9568 T9566 prep of,region
R5734 T9569 T9570 amod olfactory,receptors
R5735 T9570 T9568 pobj receptors,of
R5736 T9571 T9572 advmod highly,similar
R5737 T9572 T9563 acomp similar,is
R5738 T9573 T9563 prep between,is
R5739 T9574 T9575 advmod recently,duplicated
R5740 T9575 T9576 amod duplicated,genes
R5741 T9576 T9573 pobj genes,between
R5742 T9577 T9563 punct .,is
R5743 T9579 T9580 amod Many,pairs
R5744 T9580 T9581 nsubj pairs,show
R5745 T9582 T9580 prep of,pairs
R5746 T9583 T9584 amod similar,receptors
R5747 T9584 T9582 pobj receptors,of
R5748 T9585 T9584 amod olfactory,receptors
R5749 T9586 T9587 amod more,divergence
R5750 T9587 T9581 dobj divergence,show
R5751 T9588 T9587 compound sequence,divergence
R5752 T9589 T9581 prep in,show
R5753 T9590 T9591 det the,UTRs
R5754 T9591 T9589 pobj UTRs,in
R5755 T9592 T9581 prep than,show
R5756 T9593 T9594 det the,region
R5757 T9594 T9592 pobj region,than
R5758 T9595 T9596 npadvmod protein,coding
R5759 T9596 T9594 amod coding,region
R5760 T9597 T9596 punct -,coding
R5761 T9598 T9599 punct (,J.Y.
R5762 T9599 T9581 meta J.Y.,show
R5763 T9600 T9599 punct ", ",J.Y.
R5764 T9601 T9599 amod unpublished,J.Y.
R5765 T9602 T9599 nmod observations,J.Y.
R5766 T9603 T9599 punct ),J.Y.
R5767 T9604 T9581 punct .,show
R5768 T9606 T9607 det The,UTRs
R5769 T9607 T9608 nsubj UTRs,make
R5770 T9609 T9608 aux would,make
R5771 T9610 T9608 advmod therefore,make
R5772 T9611 T9612 det a,choice
R5773 T9612 T9608 dobj choice,make
R5774 T9613 T9612 amod better,choice
R5775 T9614 T9612 prep of,choice
R5776 T9615 T9614 pobj sequence,of
R5777 T9616 T9617 prep from,design
R5778 T9617 T9615 relcl design,sequence
R5779 T9618 T9616 pobj which,from
R5780 T9619 T9617 aux to,design
R5781 T9620 T9621 amod unique,oligonucleotides
R5782 T9621 T9617 dobj oligonucleotides,design
R5783 T9622 T9623 aux to,distinguish
R5784 T9623 T9617 advcl distinguish,design
R5785 T9624 T9625 advmod closely,related
R5786 T9625 T9626 amod related,genes
R5787 T9626 T9623 dobj genes,distinguish
R5788 T9627 T9628 amod olfactory,receptor
R5789 T9628 T9626 compound receptor,genes
R5790 T9629 T9608 punct .,make
R5791 T9631 T9632 nsubj Locations,are
R5792 T9632 T9639 ccomp are,provides
R5793 T9633 T9631 prep of,Locations
R5794 T9634 T9635 det these,regions
R5795 T9635 T9633 pobj regions,of
R5796 T9636 T9631 prep in,Locations
R5797 T9637 T9638 amod genomic,sequence
R5798 T9638 T9636 pobj sequence,in
R5799 T9640 T9632 acomp difficult,are
R5800 T9641 T9642 aux to,predict
R5801 T9642 T9640 advcl predict,difficult
R5802 T9643 T9639 punct -,provides
R5803 T9644 T9645 poss our,study
R5804 T9645 T9639 nsubj study,provides
R5805 T9646 T9647 nummod 5,UTR
R5806 T9647 T9649 compound UTR,sequences
R5807 T9648 T9646 punct ',5
R5808 T9649 T9639 dobj sequences,provides
R5809 T9650 T9649 prep of,sequences
R5810 T9651 T9652 nummod 343,genes
R5811 T9652 T9650 pobj genes,of
R5812 T9653 T9649 cc and,sequences
R5813 T9654 T9655 det the,length
R5814 T9655 T9649 conj length,sequences
R5815 T9656 T9655 amod approximate,length
R5816 T9657 T9658 nummod 3,UTR
R5817 T9658 T9655 compound UTR,length
R5818 T9659 T9657 punct ',3
R5819 T9660 T9655 prep for,length
R5820 T9661 T9662 nummod 399,genes
R5821 T9662 T9660 pobj genes,for
R5822 T9663 T9664 amod olfactory,receptor
R5823 T9664 T9662 compound receptor,genes
R5824 T9665 T9639 punct .,provides
R5825 T9667 T9668 compound Probe,design
R5826 T9668 T9669 nsubj design,account
R5827 T9669 T9672 ccomp account,designed
R5828 T9670 T9669 aux must,account
R5829 T9671 T9669 advmod also,account
R5830 T9673 T9669 prep for,account
R5831 T9674 T9675 det the,isoforms
R5832 T9675 T9673 pobj isoforms,for
R5833 T9676 T9675 amod multiple,isoforms
R5834 T9677 T9675 amod transcriptional,isoforms
R5835 T9678 T9675 acl observed,isoforms
R5836 T9679 T9678 prep for,observed
R5837 T9680 T9681 amod many,receptors
R5838 T9681 T9679 pobj receptors,for
R5839 T9682 T9681 amod olfactory,receptors
R5840 T9683 T9672 punct -,designed
R5841 T9684 T9672 prep depending,designed
R5842 T9685 T9684 prep on,depending
R5843 T9686 T9687 det the,question
R5844 T9687 T9685 pobj question,on
R5845 T9688 T9689 auxpass being,asked
R5846 T9689 T9687 acl asked,question
R5847 T9690 T9672 punct ", ",designed
R5848 T9691 T9672 nsubjpass probes,designed
R5849 T9692 T9672 aux could,designed
R5850 T9693 T9672 auxpass be,designed
R5851 T9694 T9672 prep in,designed
R5852 T9695 T9696 amod shared,sequence
R5853 T9696 T9694 pobj sequence,in
R5854 T9697 T9698 aux to,determine
R5855 T9698 T9672 advcl determine,designed
R5856 T9699 T9700 det the,level
R5857 T9700 T9698 dobj level,determine
R5858 T9701 T9700 amod total,level
R5859 T9702 T9700 prep of,level
R5860 T9703 T9704 det all,isoforms
R5861 T9704 T9702 pobj isoforms,of
R5862 T9705 T9672 punct ", ",designed
R5863 T9706 T9672 cc or,designed
R5864 T9707 T9672 conj in,designed
R5865 T9708 T9709 amod unique,exons
R5866 T9709 T9707 pobj exons,in
R5867 T9710 T9711 aux to,measure
R5868 T9711 T9707 advcl measure,in
R5869 T9712 T9713 det the,level
R5870 T9713 T9711 dobj level,measure
R5871 T9714 T9713 prep of,level
R5872 T9715 T9716 det each,isoform
R5873 T9716 T9714 pobj isoform,of
R5874 T9717 T9711 advmod separately,measure
R5875 T9718 T9672 punct .,designed

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T8458 51-59 SO_EXT:sequence_upstreamness denotes upstream
T8459 60-70 SO_EXT:0000673 denotes transcript
T8460 94-103 GO:0007608 denotes olfactory
T8461 94-112 GO_EXT:0004984 denotes olfactory receptor
T8462 113-118 SO_EXT:0000704 denotes genes
T8463 177-185 SO_EXT:0000167 denotes promoter
T8464 238-246 SO_EXT:biological_sequence denotes sequence
T8465 247-253 SO_EXT:sequence_or_structure_motif denotes motifs
T8466 295-310 GO_EXT:transcription denotes transcriptional
T8467 311-321 GO:0065007 denotes regulation
T8468 325-334 GO:0007608 denotes olfactory
T8469 325-344 GO_EXT:0004984 denotes olfactory receptors
T8470 374-379 SO_EXT:cDNA denotes cDNAs
T8471 396-402 SO_EXT:sequence_cloned_entity denotes clones
T8472 446-454 SO_EXT:0000167 denotes promoter
T8473 468-474 SO_EXT:0000204 denotes 5' UTR
T8474 475-484 SO_EXT:biological_sequence denotes sequences
T8475 541-547 CHEBI_SO_EXT:molecular_probe denotes probes
T8476 574-588 GO:0097617 denotes hybridizations
T8477 597-605 GO_EXT:biological_movement_or_translocation_process denotes mobilize
T8478 612-621 GO:0007608 denotes olfactory
T8479 612-630 GO_EXT:0004984 denotes olfactory receptor
T8480 707-713 CHEBI_SO_EXT:molecular_probe denotes probes
T8481 743-747 SO_EXT:0000704 denotes gene
T8482 760-773 SO_EXT:coding_sequence denotes coding region
T8483 777-786 GO:0007608 denotes olfactory
T8484 777-796 GO_EXT:0004984 denotes olfactory receptors
T8485 832-842 SO_EXT:sequence_duplication_process denotes duplicated
T8486 843-848 SO_EXT:0000704 denotes genes
T8487 872-881 GO:0007608 denotes olfactory
T8488 872-891 GO_EXT:0004984 denotes olfactory receptors
T8489 902-910 SO_EXT:biological_sequence denotes sequence
T8490 929-933 SO_EXT:0000203 denotes UTRs
T8491 943-950 CHEBI_PR_EXT:protein denotes protein
T8492 943-957 SO:0000010 denotes protein-coding
T8493 951-964 SO_EXT:coding_sequence denotes coding region
T8494 1003-1007 SO_EXT:0000203 denotes UTRs
T8495 1048-1056 SO_EXT:biological_sequence denotes sequence
T8496 1085-1101 CHEBI_SO_EXT:oligonucleotide denotes oligonucleotides
T8497 1133-1142 GO:0007608 denotes olfactory
T8498 1133-1151 GO_EXT:0004984 denotes olfactory receptor
T8499 1152-1157 SO_EXT:0000704 denotes genes
T8500 1189-1196 SO_EXT:0001026 denotes genomic
T8501 1197-1205 SO_EXT:biological_sequence denotes sequence
T8502 1252-1258 SO_EXT:0000204 denotes 5' UTR
T8503 1259-1268 SO_EXT:biological_sequence denotes sequences
T8504 1276-1281 SO_EXT:0000704 denotes genes
T8505 1302-1308 SO_EXT:0000205 denotes 3' UTR
T8506 1324-1333 GO:0007608 denotes olfactory
T8507 1324-1342 GO_EXT:0004984 denotes olfactory receptor
T8508 1343-1348 SO_EXT:0000704 denotes genes
T8509 1350-1355 CHEBI_SO_EXT:molecular_probe denotes Probe
T8510 1398-1413 GO_EXT:transcription denotes transcriptional
T8511 1414-1422 SO_EXT:0001060 denotes isoforms
T8512 1441-1450 GO:0007608 denotes olfactory
T8513 1441-1460 GO_EXT:0004984 denotes olfactory receptors
T8514 1502-1508 CHEBI_SO_EXT:molecular_probe denotes probes
T8515 1537-1545 SO_EXT:biological_sequence denotes sequence
T8516 1582-1590 SO_EXT:0001060 denotes isoforms
T8517 1605-1610 SO_EXT:0000147 denotes exons
T8518 1640-1647 SO_EXT:0001060 denotes isoform

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T8157 60-70 SO:0000673 denotes transcript
T8158 94-103 GO:0007608 denotes olfactory
T8159 113-118 SO:0000704 denotes genes
T8160 177-185 SO:0000167 denotes promoter
T8161 311-321 GO:0065007 denotes regulation
T8162 325-334 GO:0007608 denotes olfactory
T8163 446-454 SO:0000167 denotes promoter
T8164 468-474 SO:0000204 denotes 5' UTR
T8165 574-588 GO:0097617 denotes hybridizations
T8166 612-621 GO:0007608 denotes olfactory
T8167 743-747 SO:0000704 denotes gene
T8168 777-786 GO:0007608 denotes olfactory
T8169 843-848 SO:0000704 denotes genes
T8170 872-881 GO:0007608 denotes olfactory
T8171 929-933 SO:0000203 denotes UTRs
T8172 943-957 SO:0000010 denotes protein-coding
T8173 1003-1007 SO:0000203 denotes UTRs
T8174 1133-1142 GO:0007608 denotes olfactory
T8175 1152-1157 SO:0000704 denotes genes
T8176 1189-1196 SO:0001026 denotes genomic
T8177 1252-1258 SO:0000204 denotes 5' UTR
T8178 1276-1281 SO:0000704 denotes genes
T8179 1302-1308 SO:0000205 denotes 3' UTR
T8180 1324-1333 GO:0007608 denotes olfactory
T8181 1343-1348 SO:0000704 denotes genes
T8182 1414-1422 SO:0001060 denotes isoforms
T8183 1441-1450 GO:0007608 denotes olfactory
T8184 1582-1590 SO:0001060 denotes isoforms
T8185 1605-1610 SO:0000147 denotes exons
T8186 1640-1647 SO:0001060 denotes isoform