PMC:329117 / 17402-17629
Annnotations
craft-sa-dev
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4947 | 0-227 | sentence | denotes | In these assays, we measure transcript level per genomic copy of the gene by comparing how well a gene-specific primer pair amplifies reverse-transcribed RNA, relative to a standard curve of amplification of mouse genomic DNA. |
| T4948 | 1-3 | IN | denotes | In |
| T4949 | 21-28 | VBP | denotes | measure |
| T4950 | 4-9 | DT | denotes | these |
| T4951 | 10-16 | NNS | denotes | assays |
| T4952 | 16-18 | , | denotes | , |
| T4953 | 18-20 | PRP | denotes | we |
| T4954 | 29-39 | NN | denotes | transcript |
| T4955 | 40-45 | NN | denotes | level |
| T4956 | 46-49 | IN | denotes | per |
| T4957 | 50-57 | JJ | denotes | genomic |
| T4958 | 58-62 | NN | denotes | copy |
| T4959 | 63-65 | IN | denotes | of |
| T4960 | 66-69 | DT | denotes | the |
| T4961 | 70-74 | NN | denotes | gene |
| T4962 | 75-77 | IN | denotes | by |
| T4963 | 78-87 | VBG | denotes | comparing |
| T4964 | 88-91 | WRB | denotes | how |
| T4965 | 92-96 | RB | denotes | well |
| T4966 | 125-134 | VBZ | denotes | amplifies |
| T4967 | 97-98 | DT | denotes | a |
| T4968 | 120-124 | NN | denotes | pair |
| T4969 | 99-103 | NN | denotes | gene |
| T4970 | 104-112 | JJ | denotes | specific |
| T4971 | 103-104 | HYPH | denotes | - |
| T4972 | 113-119 | NN | denotes | primer |
| T4973 | 135-142 | JJ | denotes | reverse |
| T4974 | 143-154 | VBN | denotes | transcribed |
| T4975 | 142-143 | HYPH | denotes | - |
| T4976 | 155-158 | NN | denotes | RNA |
| T4977 | 158-160 | , | denotes | , |
| T4978 | 160-168 | JJ | denotes | relative |
| T4979 | 169-171 | IN | denotes | to |
| T4980 | 172-173 | DT | denotes | a |
| T4981 | 183-188 | NN | denotes | curve |
| T4982 | 174-182 | JJ | denotes | standard |
| T4983 | 189-191 | IN | denotes | of |
| T4984 | 192-205 | NN | denotes | amplification |
| T4985 | 206-208 | IN | denotes | of |
| T4986 | 209-214 | NN | denotes | mouse |
| T4987 | 223-226 | NN | denotes | DNA |
| T4988 | 215-222 | JJ | denotes | genomic |
| T4989 | 226-227 | . | denotes | . |
| R2898 | T4948 | T4949 | prep | In,measure |
| R2899 | T4950 | T4951 | det | these,assays |
| R2900 | T4951 | T4948 | pobj | assays,In |
| R2901 | T4952 | T4949 | punct | ", ",measure |
| R2902 | T4953 | T4949 | nsubj | we,measure |
| R2903 | T4954 | T4955 | compound | transcript,level |
| R2904 | T4955 | T4949 | dobj | level,measure |
| R2905 | T4956 | T4955 | prep | per,level |
| R2906 | T4957 | T4958 | amod | genomic,copy |
| R2907 | T4958 | T4956 | pobj | copy,per |
| R2908 | T4959 | T4958 | prep | of,copy |
| R2909 | T4960 | T4961 | det | the,gene |
| R2910 | T4961 | T4959 | pobj | gene,of |
| R2911 | T4962 | T4949 | prep | by,measure |
| R2912 | T4963 | T4962 | pcomp | comparing,by |
| R2913 | T4964 | T4965 | advmod | how,well |
| R2914 | T4965 | T4966 | advmod | well,amplifies |
| R2915 | T4966 | T4963 | ccomp | amplifies,comparing |
| R2916 | T4967 | T4968 | det | a,pair |
| R2917 | T4968 | T4966 | nsubj | pair,amplifies |
| R2918 | T4969 | T4970 | npadvmod | gene,specific |
| R2919 | T4970 | T4968 | amod | specific,pair |
| R2920 | T4971 | T4970 | punct | -,specific |
| R2921 | T4972 | T4968 | compound | primer,pair |
| R2922 | T4973 | T4974 | amod | reverse,transcribed |
| R2923 | T4974 | T4976 | amod | transcribed,RNA |
| R2924 | T4975 | T4974 | punct | -,transcribed |
| R2925 | T4976 | T4966 | dobj | RNA,amplifies |
| R2926 | T4977 | T4963 | punct | ", ",comparing |
| R2927 | T4978 | T4963 | advcl | relative,comparing |
| R2928 | T4979 | T4978 | prep | to,relative |
| R2929 | T4980 | T4981 | det | a,curve |
| R2930 | T4981 | T4979 | pobj | curve,to |
| R2931 | T4982 | T4981 | amod | standard,curve |
| R2932 | T4983 | T4981 | prep | of,curve |
| R2933 | T4984 | T4983 | pobj | amplification,of |
| R2934 | T4985 | T4984 | prep | of,amplification |
| R2935 | T4986 | T4987 | nmod | mouse,DNA |
| R2936 | T4987 | T4985 | pobj | DNA,of |
| R2937 | T4988 | T4987 | amod | genomic,DNA |
| R2938 | T4989 | T4949 | punct | .,measure |
craft-ca-core-ex-dev
Below, discontinuous spans are shown in the bag model. You can change it to the chain model.
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4512 | 29-39 | SO_EXT:0000673 | denotes | transcript |
| T4513 | 50-57 | SO_EXT:0001026 | denotes | genomic |
| T4514 | 58-62 | SO_EXT:sequence_copy_entity | denotes | copy |
| T4515 | 70-74 | SO_EXT:0000704 | denotes | gene |
| T4516 | 99-103 | SO_EXT:0000704 | denotes | gene |
| T4517 | 113-119 | SO_EXT:0000112 | denotes | primer |
| T4518 | 135-154 | GO:0001171 | denotes | reverse-transcribed |
| T4519 | 155-158 | CHEBI_SO_EXT:RNA | denotes | RNA |
| T4521 | 192-208,223-226 | GO:0006277 | denotes | amplification of DNA |
| T4522 | 209-214 | NCBITaxon:10088 | denotes | mouse |
| T4523 | 215-226 | SO_EXT:genomic_DNA | denotes | genomic DNA |
| T4524 | 223-226 | CHEBI_SO_EXT:DNA | denotes | DNA |
craft-ca-core-dev
Below, discontinuous spans are shown in the bag model. You can change it to the chain model.
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4364 | 29-39 | SO:0000673 | denotes | transcript |
| T4365 | 50-57 | SO:0001026 | denotes | genomic |
| T4366 | 70-74 | SO:0000704 | denotes | gene |
| T4367 | 99-103 | SO:0000704 | denotes | gene |
| T4368 | 113-119 | SO:0000112 | denotes | primer |
| T4369 | 135-154 | GO:0001171 | denotes | reverse-transcribed |
| T4371 | 192-208,223-226 | GO:0006277 | denotes | amplification of DNA |
| T4372 | 209-214 | NCBITaxon:10088 | denotes | mouse |
| T4373 | 215-222 | SO:0001026 | denotes | genomic |