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Id Subject Object Predicate Lexical cue
T4857 0-12 JJ denotes Quantitative
T4858 16-19 NN denotes PCR
T4859 13-15 NN denotes RT
T4860 15-16 HYPH denotes -
T4861 47-55 VBZ denotes confirms
T4862 20-22 IN denotes of
T4863 23-26 CD denotes six
T4864 37-46 NNS denotes receptors
T4865 27-36 JJ denotes olfactory
T4866 56-60 IN denotes that
T4867 89-93 VB denotes vary
T4868 61-71 NN denotes expression
T4869 72-78 NNS denotes levels
T4870 79-81 VBP denotes do
T4871 82-88 RB denotes indeed
T4872 94-106 RB denotes considerably
T4873 107-114 IN denotes between
T4874 115-120 NNS denotes genes
T4875 120-121 . denotes .
T4876 121-319 sentence denotes We used quantitative (real-time) PCR to measure olfactory epithelium transcript levels of six olfactory receptor genes and the ribosomal S16 gene in three mice of the same inbred strain (Figure 3).
T4877 122-124 PRP denotes We
T4878 125-129 VBD denotes used
T4879 130-142 JJ denotes quantitative
T4880 155-158 NN denotes PCR
T4881 143-144 -LRB- denotes (
T4882 144-148 JJ denotes real
T4883 149-153 NN denotes time
T4884 148-149 HYPH denotes -
T4885 153-154 -RRB- denotes )
T4886 159-161 TO denotes to
T4887 162-169 VB denotes measure
T4888 170-179 JJ denotes olfactory
T4889 180-190 NN denotes epithelium
T4890 202-208 NNS denotes levels
T4891 191-201 NN denotes transcript
T4892 209-211 IN denotes of
T4893 212-215 CD denotes six
T4894 235-240 NNS denotes genes
T4895 216-225 JJ denotes olfactory
T4896 226-234 NN denotes receptor
T4897 241-244 CC denotes and
T4898 245-248 DT denotes the
T4899 263-267 NN denotes gene
T4900 249-258 JJ denotes ribosomal
T4901 259-262 NN denotes S16
T4902 268-270 IN denotes in
T4903 271-276 CD denotes three
T4904 277-281 NNS denotes mice
T4905 282-284 IN denotes of
T4906 285-288 DT denotes the
T4907 301-307 NN denotes strain
T4908 289-293 JJ denotes same
T4909 294-300 JJ denotes inbred
T4910 308-309 -LRB- denotes (
T4911 309-315 NN denotes Figure
T4912 316-317 CD denotes 3
T4913 317-318 -RRB- denotes )
T4914 318-319 . denotes .
T4915 319-492 sentence denotes These genes include two olfactory receptors with more than 20 matching cDNAs, two with one or two matching cDNAs and two class I olfactory receptors with no matching cDNAs.
T4916 320-325 DT denotes These
T4917 326-331 NNS denotes genes
T4918 332-339 VBP denotes include
T4919 340-343 CD denotes two
T4920 354-363 NNS denotes receptors
T4921 344-353 JJ denotes olfactory
T4922 364-368 IN denotes with
T4923 369-373 JJR denotes more
T4924 379-381 CD denotes 20
T4925 374-378 IN denotes than
T4926 391-396 NNS denotes cDNAs
T4927 382-390 JJ denotes matching
T4928 396-398 , denotes ,
T4929 398-401 CD denotes two
T4930 402-406 IN denotes with
T4931 407-410 CD denotes one
T4932 427-432 NNS denotes cDNAs
T4933 411-413 CC denotes or
T4934 414-417 CD denotes two
T4935 418-426 JJ denotes matching
T4936 433-436 CC denotes and
T4937 437-440 CD denotes two
T4938 459-468 NNS denotes receptors
T4939 441-446 NN denotes class
T4940 447-448 CD denotes I
T4941 449-458 JJ denotes olfactory
T4942 469-473 IN denotes with
T4943 474-476 DT denotes no
T4944 486-491 NNS denotes cDNAs
T4945 477-485 JJ denotes matching
T4946 491-492 . denotes .
T4947 492-719 sentence denotes In these assays, we measure transcript level per genomic copy of the gene by comparing how well a gene-specific primer pair amplifies reverse-transcribed RNA, relative to a standard curve of amplification of mouse genomic DNA.
T4948 493-495 IN denotes In
T4949 513-520 VBP denotes measure
T4950 496-501 DT denotes these
T4951 502-508 NNS denotes assays
T4952 508-510 , denotes ,
T4953 510-512 PRP denotes we
T4954 521-531 NN denotes transcript
T4955 532-537 NN denotes level
T4956 538-541 IN denotes per
T4957 542-549 JJ denotes genomic
T4958 550-554 NN denotes copy
T4959 555-557 IN denotes of
T4960 558-561 DT denotes the
T4961 562-566 NN denotes gene
T4962 567-569 IN denotes by
T4963 570-579 VBG denotes comparing
T4964 580-583 WRB denotes how
T4965 584-588 RB denotes well
T4966 617-626 VBZ denotes amplifies
T4967 589-590 DT denotes a
T4968 612-616 NN denotes pair
T4969 591-595 NN denotes gene
T4970 596-604 JJ denotes specific
T4971 595-596 HYPH denotes -
T4972 605-611 NN denotes primer
T4973 627-634 JJ denotes reverse
T4974 635-646 VBN denotes transcribed
T4975 634-635 HYPH denotes -
T4976 647-650 NN denotes RNA
T4977 650-652 , denotes ,
T4978 652-660 JJ denotes relative
T4979 661-663 IN denotes to
T4980 664-665 DT denotes a
T4981 675-680 NN denotes curve
T4982 666-674 JJ denotes standard
T4983 681-683 IN denotes of
T4984 684-697 NN denotes amplification
T4985 698-700 IN denotes of
T4986 701-706 NN denotes mouse
T4987 715-718 NN denotes DNA
T4988 707-714 JJ denotes genomic
T4989 718-719 . denotes .
T4990 719-832 sentence denotes We find that expression levels can vary by almost 300-fold between genes (for example, genes A and D, Figure 3).
T4991 720-722 PRP denotes We
T4992 723-727 VBP denotes find
T4993 728-732 IN denotes that
T4994 755-759 VB denotes vary
T4995 733-743 NN denotes expression
T4996 744-750 NNS denotes levels
T4997 751-754 MD denotes can
T4998 760-762 IN denotes by
T4999 763-769 RB denotes almost
T5000 770-778 JJ denotes 300-fold
T5001 779-786 IN denotes between
T5002 787-792 NNS denotes genes
T5003 793-794 -LRB- denotes (
T5004 822-828 NN denotes Figure
T5005 794-797 IN denotes for
T5006 798-805 NN denotes example
T5007 805-807 , denotes ,
T5008 807-812 NNS denotes genes
T5009 813-814 NN denotes A
T5010 815-818 CC denotes and
T5011 819-820 NN denotes D
T5012 820-822 , denotes ,
T5013 829-830 CD denotes 3
T5014 830-831 -RRB- denotes )
T5015 831-832 . denotes .
T5016 832-1129 sentence denotes However, cDNA numbers are not a good indicator of expression level, a discrepancy that is likely to be due to bias in the screen (we used degenerate primers to make the probes, which will favor some genes over others) and in the libraries (oligo-dT priming will favor genes with shorter 3' UTRs).
T5017 833-840 RB denotes However
T5018 855-858 VBP denotes are
T5019 840-842 , denotes ,
T5020 842-846 NN denotes cDNA
T5021 847-854 NNS denotes numbers
T5022 859-862 RB denotes not
T5023 863-864 DT denotes a
T5024 870-879 NN denotes indicator
T5025 865-869 JJ denotes good
T5026 880-882 IN denotes of
T5027 883-893 NN denotes expression
T5028 894-899 NN denotes level
T5029 899-901 , denotes ,
T5030 901-902 DT denotes a
T5031 903-914 NN denotes discrepancy
T5032 915-919 WDT denotes that
T5033 920-922 VBZ denotes is
T5034 923-929 JJ denotes likely
T5035 930-932 TO denotes to
T5036 933-935 VB denotes be
T5037 936-939 IN denotes due
T5038 940-942 IN denotes to
T5039 943-947 NN denotes bias
T5040 948-950 IN denotes in
T5041 951-954 DT denotes the
T5042 955-961 NN denotes screen
T5043 962-963 -LRB- denotes (
T5044 966-970 VBD denotes used
T5045 963-965 PRP denotes we
T5046 971-981 JJ denotes degenerate
T5047 982-989 NNS denotes primers
T5048 990-992 TO denotes to
T5049 993-997 VB denotes make
T5050 998-1001 DT denotes the
T5051 1002-1008 NNS denotes probes
T5052 1008-1010 , denotes ,
T5053 1010-1015 WDT denotes which
T5054 1021-1026 VB denotes favor
T5055 1016-1020 MD denotes will
T5056 1027-1031 DT denotes some
T5057 1032-1037 NNS denotes genes
T5058 1038-1042 IN denotes over
T5059 1043-1049 NNS denotes others
T5060 1049-1050 -RRB- denotes )
T5061 1051-1054 CC denotes and
T5062 1055-1057 IN denotes in
T5063 1058-1061 DT denotes the
T5064 1062-1071 NNS denotes libraries
T5065 1072-1073 -LRB- denotes (
T5066 1095-1100 VB denotes favor
T5067 1073-1078 NN denotes oligo
T5068 1079-1081 NN denotes dT
T5069 1078-1079 HYPH denotes -
T5070 1082-1089 NN denotes priming
T5071 1090-1094 MD denotes will
T5072 1101-1106 NNS denotes genes
T5073 1107-1111 IN denotes with
T5074 1112-1119 JJR denotes shorter
T5075 1123-1127 NNS denotes UTRs
T5076 1120-1121 CD denotes 3
T5077 1121-1122 SYM denotes '
T5078 1127-1128 -RRB- denotes )
T5079 1128-1129 . denotes .
T5080 1129-1430 sentence denotes For example, we observe large expression differences in all three mice between two genes for which similar numbers of cDNAs were found (genes A and B, Figure 3), and conversely, similar expression levels between two genes with a ten-fold difference in number of cDNAs found (genes B and C, Figure 3).
T5081 1130-1133 IN denotes For
T5082 1146-1153 VBP denotes observe
T5083 1134-1141 NN denotes example
T5084 1141-1143 , denotes ,
T5085 1143-1145 PRP denotes we
T5086 1154-1159 JJ denotes large
T5087 1171-1182 NNS denotes differences
T5088 1160-1170 NN denotes expression
T5089 1183-1185 IN denotes in
T5090 1186-1189 PDT denotes all
T5091 1196-1200 NNS denotes mice
T5092 1190-1195 CD denotes three
T5093 1201-1208 IN denotes between
T5094 1209-1212 CD denotes two
T5095 1213-1218 NNS denotes genes
T5096 1219-1222 IN denotes for
T5097 1259-1264 VBN denotes found
T5098 1223-1228 WDT denotes which
T5099 1229-1236 JJ denotes similar
T5100 1237-1244 NNS denotes numbers
T5101 1245-1247 IN denotes of
T5102 1248-1253 NNS denotes cDNAs
T5103 1254-1258 VBD denotes were
T5104 1265-1266 -LRB- denotes (
T5105 1266-1271 NNS denotes genes
T5106 1272-1273 NN denotes A
T5107 1274-1277 CC denotes and
T5108 1278-1279 NN denotes B
T5109 1279-1281 , denotes ,
T5110 1281-1287 NN denotes Figure
T5111 1288-1289 CD denotes 3
T5112 1289-1290 -RRB- denotes )
T5113 1290-1292 , denotes ,
T5114 1292-1295 CC denotes and
T5115 1296-1306 RB denotes conversely
T5116 1327-1333 NNS denotes levels
T5117 1306-1308 , denotes ,
T5118 1308-1315 JJ denotes similar
T5119 1316-1326 NN denotes expression
T5120 1334-1341 IN denotes between
T5121 1342-1345 CD denotes two
T5122 1346-1351 NNS denotes genes
T5123 1352-1356 IN denotes with
T5124 1357-1358 DT denotes a
T5125 1368-1378 NN denotes difference
T5126 1359-1367 JJ denotes ten-fold
T5127 1379-1381 IN denotes in
T5128 1382-1388 NN denotes number
T5129 1389-1391 IN denotes of
T5130 1392-1397 NNS denotes cDNAs
T5131 1398-1403 VBN denotes found
T5132 1404-1405 -LRB- denotes (
T5133 1405-1410 NNS denotes genes
T5134 1411-1412 NN denotes B
T5135 1413-1416 CC denotes and
T5136 1417-1418 NN denotes C
T5137 1418-1420 , denotes ,
T5138 1420-1426 NN denotes Figure
T5139 1427-1428 CD denotes 3
T5140 1428-1429 -RRB- denotes )
T5141 1429-1430 . denotes .
T5142 1430-1783 sentence denotes Expression levels are mostly consistent between different mice: we find similar expression-level differences between olfactory receptor genes in all three mice examined (that is, the rank order of the six genes is similar among the three mice), although there is variation in expression level of some genes between mice (for example, gene E, Figure 3).
T5143 1431-1441 NN denotes Expression
T5144 1442-1448 NNS denotes levels
T5145 1449-1452 VBP denotes are
T5146 1498-1502 VBP denotes find
T5147 1453-1459 RB denotes mostly
T5148 1460-1470 JJ denotes consistent
T5149 1471-1478 IN denotes between
T5150 1479-1488 JJ denotes different
T5151 1489-1493 NNS denotes mice
T5152 1493-1495 : denotes :
T5153 1495-1497 PRP denotes we
T5154 1503-1510 JJ denotes similar
T5155 1528-1539 NNS denotes differences
T5156 1511-1521 NN denotes expression
T5157 1522-1527 NN denotes level
T5158 1521-1522 HYPH denotes -
T5159 1540-1547 IN denotes between
T5160 1548-1557 JJ denotes olfactory
T5161 1558-1566 NN denotes receptor
T5162 1567-1572 NNS denotes genes
T5163 1573-1575 IN denotes in
T5164 1576-1579 DT denotes all
T5165 1586-1590 NNS denotes mice
T5166 1580-1585 CD denotes three
T5167 1591-1599 VBN denotes examined
T5168 1600-1601 -LRB- denotes (
T5169 1642-1644 VBZ denotes is
T5170 1601-1605 RB denotes that
T5171 1606-1608 RB denotes is
T5172 1608-1610 , denotes ,
T5173 1610-1613 DT denotes the
T5174 1619-1624 NN denotes order
T5175 1614-1618 NN denotes rank
T5176 1625-1627 IN denotes of
T5177 1628-1631 DT denotes the
T5178 1636-1641 NNS denotes genes
T5179 1632-1635 CD denotes six
T5180 1645-1652 JJ denotes similar
T5181 1653-1658 IN denotes among
T5182 1659-1662 DT denotes the
T5183 1669-1673 NNS denotes mice
T5184 1663-1668 CD denotes three
T5185 1673-1674 -RRB- denotes )
T5186 1674-1676 , denotes ,
T5187 1676-1684 IN denotes although
T5188 1691-1693 VBZ denotes is
T5189 1685-1690 EX denotes there
T5190 1694-1703 NN denotes variation
T5191 1704-1706 IN denotes in
T5192 1707-1717 NN denotes expression
T5193 1718-1723 NN denotes level
T5194 1724-1726 IN denotes of
T5195 1727-1731 DT denotes some
T5196 1732-1737 NNS denotes genes
T5197 1738-1745 IN denotes between
T5198 1746-1750 NNS denotes mice
T5199 1751-1752 -LRB- denotes (
T5200 1773-1779 NN denotes Figure
T5201 1752-1755 IN denotes for
T5202 1756-1763 NN denotes example
T5203 1763-1765 , denotes ,
T5204 1765-1769 NN denotes gene
T5205 1770-1771 NN denotes E
T5206 1771-1773 , denotes ,
T5207 1780-1781 CD denotes 3
T5208 1781-1782 -RRB- denotes )
T5209 1782-1783 . denotes .
R2813 T4857 T4858 amod Quantitative,PCR
R2814 T4858 T4861 nsubj PCR,confirms
R2815 T4859 T4858 compound RT,PCR
R2816 T4860 T4858 punct -,PCR
R2817 T4862 T4858 prep of,PCR
R2818 T4863 T4864 nummod six,receptors
R2819 T4864 T4862 pobj receptors,of
R2820 T4865 T4864 amod olfactory,receptors
R2821 T4866 T4867 mark that,vary
R2822 T4867 T4861 ccomp vary,confirms
R2823 T4868 T4869 compound expression,levels
R2824 T4869 T4867 nsubj levels,vary
R2825 T4870 T4867 aux do,vary
R2826 T4871 T4867 advmod indeed,vary
R2827 T4872 T4867 advmod considerably,vary
R2828 T4873 T4867 prep between,vary
R2829 T4874 T4873 pobj genes,between
R2830 T4875 T4861 punct .,confirms
R2831 T4877 T4878 nsubj We,used
R2832 T4879 T4880 amod quantitative,PCR
R2833 T4880 T4878 dobj PCR,used
R2834 T4881 T4880 punct (,PCR
R2835 T4882 T4883 amod real,time
R2836 T4883 T4880 nmod time,PCR
R2837 T4884 T4883 punct -,time
R2838 T4885 T4880 punct ),PCR
R2839 T4886 T4887 aux to,measure
R2840 T4887 T4878 advcl measure,used
R2841 T4888 T4889 amod olfactory,epithelium
R2842 T4889 T4890 compound epithelium,levels
R2843 T4890 T4887 dobj levels,measure
R2844 T4891 T4890 compound transcript,levels
R2845 T4892 T4890 prep of,levels
R2846 T4893 T4894 nummod six,genes
R2847 T4894 T4892 pobj genes,of
R2848 T4895 T4896 amod olfactory,receptor
R2849 T4896 T4894 compound receptor,genes
R2850 T4897 T4894 cc and,genes
R2851 T4898 T4899 det the,gene
R2852 T4899 T4894 conj gene,genes
R2853 T4900 T4899 amod ribosomal,gene
R2854 T4901 T4899 compound S16,gene
R2855 T4902 T4887 prep in,measure
R2856 T4903 T4904 nummod three,mice
R2857 T4904 T4902 pobj mice,in
R2858 T4905 T4904 prep of,mice
R2859 T4906 T4907 det the,strain
R2860 T4907 T4905 pobj strain,of
R2861 T4908 T4907 amod same,strain
R2862 T4909 T4907 amod inbred,strain
R2863 T4910 T4911 punct (,Figure
R2864 T4911 T4887 parataxis Figure,measure
R2865 T4912 T4911 nummod 3,Figure
R2866 T4913 T4911 punct ),Figure
R2867 T4914 T4878 punct .,used
R2868 T4916 T4917 det These,genes
R2869 T4917 T4918 nsubj genes,include
R2870 T4919 T4920 nummod two,receptors
R2871 T4920 T4918 dobj receptors,include
R2872 T4921 T4920 amod olfactory,receptors
R2873 T4922 T4920 prep with,receptors
R2874 T4923 T4924 amod more,20
R2875 T4924 T4926 nummod 20,cDNAs
R2876 T4925 T4924 quantmod than,20
R2877 T4926 T4922 pobj cDNAs,with
R2878 T4927 T4926 amod matching,cDNAs
R2879 T4928 T4920 punct ", ",receptors
R2880 T4929 T4920 conj two,receptors
R2881 T4930 T4929 prep with,two
R2882 T4931 T4932 nummod one,cDNAs
R2883 T4932 T4930 pobj cDNAs,with
R2884 T4933 T4931 cc or,one
R2885 T4934 T4931 conj two,one
R2886 T4935 T4932 amod matching,cDNAs
R2887 T4936 T4929 cc and,two
R2888 T4937 T4938 nummod two,receptors
R2889 T4938 T4929 conj receptors,two
R2890 T4939 T4938 nmod class,receptors
R2891 T4940 T4939 nummod I,class
R2892 T4941 T4938 amod olfactory,receptors
R2893 T4942 T4938 prep with,receptors
R2894 T4943 T4944 det no,cDNAs
R2895 T4944 T4942 pobj cDNAs,with
R2896 T4945 T4944 amod matching,cDNAs
R2897 T4946 T4918 punct .,include
R2898 T4948 T4949 prep In,measure
R2899 T4950 T4951 det these,assays
R2900 T4951 T4948 pobj assays,In
R2901 T4952 T4949 punct ", ",measure
R2902 T4953 T4949 nsubj we,measure
R2903 T4954 T4955 compound transcript,level
R2904 T4955 T4949 dobj level,measure
R2905 T4956 T4955 prep per,level
R2906 T4957 T4958 amod genomic,copy
R2907 T4958 T4956 pobj copy,per
R2908 T4959 T4958 prep of,copy
R2909 T4960 T4961 det the,gene
R2910 T4961 T4959 pobj gene,of
R2911 T4962 T4949 prep by,measure
R2912 T4963 T4962 pcomp comparing,by
R2913 T4964 T4965 advmod how,well
R2914 T4965 T4966 advmod well,amplifies
R2915 T4966 T4963 ccomp amplifies,comparing
R2916 T4967 T4968 det a,pair
R2917 T4968 T4966 nsubj pair,amplifies
R2918 T4969 T4970 npadvmod gene,specific
R2919 T4970 T4968 amod specific,pair
R2920 T4971 T4970 punct -,specific
R2921 T4972 T4968 compound primer,pair
R2922 T4973 T4974 amod reverse,transcribed
R2923 T4974 T4976 amod transcribed,RNA
R2924 T4975 T4974 punct -,transcribed
R2925 T4976 T4966 dobj RNA,amplifies
R2926 T4977 T4963 punct ", ",comparing
R2927 T4978 T4963 advcl relative,comparing
R2928 T4979 T4978 prep to,relative
R2929 T4980 T4981 det a,curve
R2930 T4981 T4979 pobj curve,to
R2931 T4982 T4981 amod standard,curve
R2932 T4983 T4981 prep of,curve
R2933 T4984 T4983 pobj amplification,of
R2934 T4985 T4984 prep of,amplification
R2935 T4986 T4987 nmod mouse,DNA
R2936 T4987 T4985 pobj DNA,of
R2937 T4988 T4987 amod genomic,DNA
R2938 T4989 T4949 punct .,measure
R2939 T4991 T4992 nsubj We,find
R2940 T4993 T4994 mark that,vary
R2941 T4994 T4992 ccomp vary,find
R2942 T4995 T4996 compound expression,levels
R2943 T4996 T4994 nsubj levels,vary
R2944 T4997 T4994 aux can,vary
R2945 T4998 T4994 prep by,vary
R2946 T4999 T5000 advmod almost,300-fold
R2947 T5000 T4998 pcomp 300-fold,by
R2948 T5001 T4994 prep between,vary
R2949 T5002 T5001 pobj genes,between
R2950 T5003 T5004 punct (,Figure
R2951 T5004 T5002 parataxis Figure,genes
R2952 T5005 T5004 prep for,Figure
R2953 T5006 T5005 pobj example,for
R2954 T5007 T5004 punct ", ",Figure
R2955 T5008 T5009 compound genes,A
R2956 T5009 T5004 dep A,Figure
R2957 T5010 T5009 cc and,A
R2958 T5011 T5009 conj D,A
R2959 T5012 T5004 punct ", ",Figure
R2960 T5013 T5004 nummod 3,Figure
R2961 T5014 T5004 punct ),Figure
R2962 T5015 T4992 punct .,find
R2963 T5017 T5018 advmod However,are
R2964 T5019 T5018 punct ", ",are
R2965 T5020 T5021 compound cDNA,numbers
R2966 T5021 T5018 nsubj numbers,are
R2967 T5022 T5018 neg not,are
R2968 T5023 T5024 det a,indicator
R2969 T5024 T5018 attr indicator,are
R2970 T5025 T5024 amod good,indicator
R2971 T5026 T5024 prep of,indicator
R2972 T5027 T5028 compound expression,level
R2973 T5028 T5026 pobj level,of
R2974 T5029 T5018 punct ", ",are
R2975 T5030 T5031 det a,discrepancy
R2976 T5031 T5018 npadvmod discrepancy,are
R2977 T5032 T5033 dep that,is
R2978 T5033 T5031 relcl is,discrepancy
R2979 T5034 T5033 acomp likely,is
R2980 T5035 T5036 aux to,be
R2981 T5036 T5034 xcomp be,likely
R2982 T5037 T5036 prep due,be
R2983 T5038 T5037 pcomp to,due
R2984 T5039 T5037 pobj bias,due
R2985 T5040 T5039 prep in,bias
R2986 T5041 T5042 det the,screen
R2987 T5042 T5040 pobj screen,in
R2988 T5043 T5044 punct (,used
R2989 T5044 T5042 parataxis used,screen
R2990 T5045 T5044 nsubj we,used
R2991 T5046 T5047 amod degenerate,primers
R2992 T5047 T5044 dobj primers,used
R2993 T5048 T5049 aux to,make
R2994 T5049 T5044 advcl make,used
R2995 T5050 T5051 det the,probes
R2996 T5051 T5049 dobj probes,make
R2997 T5052 T5044 punct ", ",used
R2998 T5053 T5054 dep which,favor
R2999 T5054 T5044 ccomp favor,used
R3000 T5055 T5054 aux will,favor
R3001 T5056 T5057 det some,genes
R3002 T5057 T5054 dobj genes,favor
R3003 T5058 T5054 prep over,favor
R3004 T5059 T5058 pobj others,over
R3005 T5060 T5044 punct ),used
R3006 T5061 T5040 cc and,in
R3007 T5062 T5040 conj in,in
R3008 T5063 T5064 det the,libraries
R3009 T5064 T5062 pobj libraries,in
R3010 T5065 T5066 punct (,favor
R3011 T5066 T5064 parataxis favor,libraries
R3012 T5067 T5068 compound oligo,dT
R3013 T5068 T5070 compound dT,priming
R3014 T5069 T5068 punct -,dT
R3015 T5070 T5066 nsubj priming,favor
R3016 T5071 T5066 aux will,favor
R3017 T5072 T5066 dobj genes,favor
R3018 T5073 T5072 prep with,genes
R3019 T5074 T5075 amod shorter,UTRs
R3020 T5075 T5073 pobj UTRs,with
R3021 T5076 T5075 nummod 3,UTRs
R3022 T5077 T5076 punct ',3
R3023 T5078 T5066 punct ),favor
R3024 T5079 T5018 punct .,are
R3025 T5081 T5082 prep For,observe
R3026 T5083 T5081 pobj example,For
R3027 T5084 T5082 punct ", ",observe
R3028 T5085 T5082 nsubj we,observe
R3029 T5086 T5087 amod large,differences
R3030 T5087 T5082 dobj differences,observe
R3031 T5088 T5087 compound expression,differences
R3032 T5089 T5087 prep in,differences
R3033 T5090 T5091 predet all,mice
R3034 T5091 T5089 pobj mice,in
R3035 T5092 T5091 nummod three,mice
R3036 T5093 T5087 prep between,differences
R3037 T5094 T5095 nummod two,genes
R3038 T5095 T5093 pobj genes,between
R3039 T5096 T5097 prep for,found
R3040 T5097 T5095 relcl found,genes
R3041 T5098 T5096 pobj which,for
R3042 T5099 T5100 amod similar,numbers
R3043 T5100 T5097 nsubjpass numbers,found
R3044 T5101 T5100 prep of,numbers
R3045 T5102 T5101 pobj cDNAs,of
R3046 T5103 T5097 auxpass were,found
R3047 T5104 T5095 punct (,genes
R3048 T5105 T5106 compound genes,A
R3049 T5106 T5095 appos A,genes
R3050 T5107 T5106 cc and,A
R3051 T5108 T5106 conj B,A
R3052 T5109 T5110 punct ", ",Figure
R3053 T5110 T5095 parataxis Figure,genes
R3054 T5111 T5110 nummod 3,Figure
R3055 T5112 T5110 punct ),Figure
R3056 T5113 T5087 punct ", ",differences
R3057 T5114 T5087 cc and,differences
R3058 T5115 T5116 advmod conversely,levels
R3059 T5116 T5087 conj levels,differences
R3060 T5117 T5116 punct ", ",levels
R3061 T5118 T5116 amod similar,levels
R3062 T5119 T5116 compound expression,levels
R3063 T5120 T5116 prep between,levels
R3064 T5121 T5122 nummod two,genes
R3065 T5122 T5120 pobj genes,between
R3066 T5123 T5122 prep with,genes
R3067 T5124 T5125 det a,difference
R3068 T5125 T5123 pobj difference,with
R3069 T5126 T5125 amod ten-fold,difference
R3070 T5127 T5125 prep in,difference
R3071 T5128 T5127 pobj number,in
R3072 T5129 T5128 prep of,number
R3073 T5130 T5129 pobj cDNAs,of
R3074 T5131 T5128 acl found,number
R3075 T5132 T5122 punct (,genes
R3076 T5133 T5134 compound genes,B
R3077 T5134 T5122 appos B,genes
R3078 T5135 T5134 cc and,B
R3079 T5136 T5134 conj C,B
R3080 T5137 T5138 punct ", ",Figure
R3081 T5138 T5122 parataxis Figure,genes
R3082 T5139 T5138 nummod 3,Figure
R3083 T5140 T5138 punct ),Figure
R3084 T5141 T5082 punct .,observe
R3085 T5143 T5144 compound Expression,levels
R3086 T5144 T5145 nsubj levels,are
R3087 T5145 T5146 ccomp are,find
R3088 T5147 T5148 advmod mostly,consistent
R3089 T5148 T5145 acomp consistent,are
R3090 T5149 T5145 prep between,are
R3091 T5150 T5151 amod different,mice
R3092 T5151 T5149 pobj mice,between
R3093 T5152 T5146 punct : ,find
R3094 T5153 T5146 nsubj we,find
R3095 T5154 T5155 amod similar,differences
R3096 T5155 T5146 dobj differences,find
R3097 T5156 T5157 compound expression,level
R3098 T5157 T5155 compound level,differences
R3099 T5158 T5157 punct -,level
R3100 T5159 T5155 prep between,differences
R3101 T5160 T5161 amod olfactory,receptor
R3102 T5161 T5162 compound receptor,genes
R3103 T5162 T5159 pobj genes,between
R3104 T5163 T5146 prep in,find
R3105 T5164 T5165 det all,mice
R3106 T5165 T5163 pobj mice,in
R3107 T5166 T5165 nummod three,mice
R3108 T5167 T5165 acl examined,mice
R3109 T5168 T5169 punct (,is
R3110 T5169 T5146 parataxis is,find
R3111 T5170 T5171 advmod that,is
R3112 T5171 T5169 advmod is,is
R3113 T5172 T5169 punct ", ",is
R3114 T5173 T5174 det the,order
R3115 T5174 T5169 nsubj order,is
R3116 T5175 T5174 compound rank,order
R3117 T5176 T5174 prep of,order
R3118 T5177 T5178 det the,genes
R3119 T5178 T5176 pobj genes,of
R3120 T5179 T5178 nummod six,genes
R3121 T5180 T5169 acomp similar,is
R3122 T5181 T5169 prep among,is
R3123 T5182 T5183 det the,mice
R3124 T5183 T5181 pobj mice,among
R3125 T5184 T5183 nummod three,mice
R3126 T5185 T5169 punct ),is
R3127 T5186 T5146 punct ", ",find
R3128 T5187 T5188 mark although,is
R3129 T5188 T5146 advcl is,find
R3130 T5189 T5188 expl there,is
R3131 T5190 T5188 attr variation,is
R3132 T5191 T5190 prep in,variation
R3133 T5192 T5193 compound expression,level
R3134 T5193 T5191 pobj level,in
R3135 T5194 T5193 prep of,level
R3136 T5195 T5196 det some,genes
R3137 T5196 T5194 pobj genes,of
R3138 T5197 T5188 prep between,is
R3139 T5198 T5197 pobj mice,between
R3140 T5199 T5200 punct (,Figure
R3141 T5200 T5188 parataxis Figure,is
R3142 T5201 T5200 prep for,Figure
R3143 T5202 T5201 pobj example,for
R3144 T5203 T5200 punct ", ",Figure
R3145 T5204 T5205 compound gene,E
R3146 T5205 T5200 dep E,Figure
R3147 T5206 T5200 punct ", ",Figure
R3148 T5207 T5200 nummod 3,Figure
R3149 T5208 T5200 punct ),Figure
R3150 T5209 T5146 punct .,find

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T4489 13-15 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes RT
T4490 27-36 GO:0007608 denotes olfactory
T4491 27-46 GO_EXT:0004984 denotes olfactory receptors
T4492 61-71 GO:0010467 denotes expression
T4493 115-120 SO_EXT:0000704 denotes genes
T4494 170-179 GO:0007608 denotes olfactory
T4495 170-190 UBERON:0001997 denotes olfactory epithelium
T4496 191-201 SO_EXT:0000673 denotes transcript
T4497 216-225 GO:0007608 denotes olfactory
T4498 216-234 GO_EXT:0004984 denotes olfactory receptor
T4499 235-240 SO_EXT:0000704 denotes genes
T4500 249-258 GO:0005840 denotes ribosomal
T4501 249-262 PR_EXT:000014258 denotes ribosomal S16
T4502 263-267 SO_EXT:0000704 denotes gene
T4503 277-281 NCBITaxon:10088 denotes mice
T4504 326-331 SO_EXT:0000704 denotes genes
T4505 344-353 GO:0007608 denotes olfactory
T4506 344-363 GO_EXT:0004984 denotes olfactory receptors
T4507 391-396 SO_EXT:cDNA denotes cDNAs
T4508 427-432 SO_EXT:cDNA denotes cDNAs
T4509 449-458 GO:0007608 denotes olfactory
T4510 449-468 GO_EXT:0004984 denotes olfactory receptors
T4511 486-491 SO_EXT:cDNA denotes cDNAs
T4512 521-531 SO_EXT:0000673 denotes transcript
T4513 542-549 SO_EXT:0001026 denotes genomic
T4514 550-554 SO_EXT:sequence_copy_entity denotes copy
T4515 562-566 SO_EXT:0000704 denotes gene
T4516 591-595 SO_EXT:0000704 denotes gene
T4517 605-611 SO_EXT:0000112 denotes primer
T4518 627-646 GO:0001171 denotes reverse-transcribed
T4519 647-650 CHEBI_SO_EXT:RNA denotes RNA
T4520 684-700 _FRAGMENT denotes amplification of
T4521 715-718 GO:0006277 denotes DNA
T4522 701-706 NCBITaxon:10088 denotes mouse
T4523 707-718 SO_EXT:genomic_DNA denotes genomic DNA
T4524 715-718 CHEBI_SO_EXT:DNA denotes DNA
T4525 733-743 GO:0010467 denotes expression
T4526 787-792 SO_EXT:0000704 denotes genes
T4527 807-812 SO_EXT:0000704 denotes genes
T4528 842-846 SO_EXT:cDNA denotes cDNA
T4529 883-893 GO:0010467 denotes expression
T4530 982-989 SO_EXT:0000112 denotes primers
T4531 1002-1008 CHEBI_SO_EXT:molecular_probe denotes probes
T4532 1032-1037 SO_EXT:0000704 denotes genes
T4533 1073-1078 CHEBI_SO_EXT:oligonucleotide denotes oligo
T4534 1079-1081 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes dT
T4535 1101-1106 SO_EXT:0000704 denotes genes
T4536 1120-1127 SO_EXT:0000205 denotes 3' UTRs
T4537 1160-1170 GO:0010467 denotes expression
T4538 1196-1200 NCBITaxon:10088 denotes mice
T4539 1213-1218 SO_EXT:0000704 denotes genes
T4540 1248-1253 SO_EXT:cDNA denotes cDNAs
T4541 1266-1271 SO_EXT:0000704 denotes genes
T4542 1316-1326 GO:0010467 denotes expression
T4543 1346-1351 SO_EXT:0000704 denotes genes
T4544 1392-1397 SO_EXT:cDNA denotes cDNAs
T4545 1405-1410 SO_EXT:0000704 denotes genes
T4546 1431-1441 GO:0010467 denotes Expression
T4547 1489-1493 NCBITaxon:10088 denotes mice
T4548 1511-1521 GO:0010467 denotes expression
T4549 1548-1557 GO:0007608 denotes olfactory
T4550 1548-1566 GO_EXT:0004984 denotes olfactory receptor
T4551 1567-1572 SO_EXT:0000704 denotes genes
T4552 1586-1590 NCBITaxon:10088 denotes mice
T4553 1636-1641 SO_EXT:0000704 denotes genes
T4554 1669-1673 NCBITaxon:10088 denotes mice
T4555 1707-1717 GO:0010467 denotes expression
T4556 1732-1737 SO_EXT:0000704 denotes genes
T4557 1746-1750 NCBITaxon:10088 denotes mice
T4558 1765-1769 SO_EXT:0000704 denotes gene
R2587 T4521 T4520 _lexicallyChainedTo DNA,amplification of

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T4349 27-36 GO:0007608 denotes olfactory
T4350 61-71 GO:0010467 denotes expression
T4351 115-120 SO:0000704 denotes genes
T4352 170-179 GO:0007608 denotes olfactory
T4353 170-190 UBERON:0001997 denotes olfactory epithelium
T4354 191-201 SO:0000673 denotes transcript
T4355 216-225 GO:0007608 denotes olfactory
T4356 235-240 SO:0000704 denotes genes
T4357 249-258 GO:0005840 denotes ribosomal
T4358 249-262 PR:000014258 denotes ribosomal S16
T4359 263-267 SO:0000704 denotes gene
T4360 277-281 NCBITaxon:10088 denotes mice
T4361 326-331 SO:0000704 denotes genes
T4362 344-353 GO:0007608 denotes olfactory
T4363 449-458 GO:0007608 denotes olfactory
T4364 521-531 SO:0000673 denotes transcript
T4365 542-549 SO:0001026 denotes genomic
T4366 562-566 SO:0000704 denotes gene
T4367 591-595 SO:0000704 denotes gene
T4368 605-611 SO:0000112 denotes primer
T4369 627-646 GO:0001171 denotes reverse-transcribed
T4370 684-700 _FRAGMENT denotes amplification of
T4371 715-718 GO:0006277 denotes DNA
T4372 701-706 NCBITaxon:10088 denotes mouse
T4373 707-714 SO:0001026 denotes genomic
T4374 733-743 GO:0010467 denotes expression
T4375 787-792 SO:0000704 denotes genes
T4376 807-812 SO:0000704 denotes genes
T4377 883-893 GO:0010467 denotes expression
T4378 982-989 SO:0000112 denotes primers
T4379 1032-1037 SO:0000704 denotes genes
T4380 1101-1106 SO:0000704 denotes genes
T4381 1120-1127 SO:0000205 denotes 3' UTRs
T4382 1160-1170 GO:0010467 denotes expression
T4383 1196-1200 NCBITaxon:10088 denotes mice
T4384 1213-1218 SO:0000704 denotes genes
T4385 1266-1271 SO:0000704 denotes genes
T4386 1316-1326 GO:0010467 denotes expression
T4387 1346-1351 SO:0000704 denotes genes
T4388 1405-1410 SO:0000704 denotes genes
T4389 1431-1441 GO:0010467 denotes Expression
T4390 1489-1493 NCBITaxon:10088 denotes mice
T4391 1511-1521 GO:0010467 denotes expression
T4392 1548-1557 GO:0007608 denotes olfactory
T4393 1567-1572 SO:0000704 denotes genes
T4394 1586-1590 NCBITaxon:10088 denotes mice
T4395 1636-1641 SO:0000704 denotes genes
T4396 1669-1673 NCBITaxon:10088 denotes mice
T4397 1707-1717 GO:0010467 denotes expression
T4398 1732-1737 SO:0000704 denotes genes
T4399 1746-1750 NCBITaxon:10088 denotes mice
T4400 1765-1769 SO:0000704 denotes gene
R2586 T4371 T4370 _lexicallyChainedTo DNA,amplification of