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PMC:3279418 / 9997-10284 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22348129-16691244-89575679 2-4 16691244 denotes 17
22348129-19686699-89575680 8-10 19686699 denotes 18
T64617 2-4 16691244 denotes 17
T40972 8-10 19686699 denotes 18

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T3546 1-2 -LRB- denotes [
T3547 2-4 CD denotes 17
T3548 4-5 -RRB- denotes ]
T3549 5-6 -COMMA- denotes ,
T3550 7-8 -LRB- denotes [
T3551 8-10 CD denotes 18
T3552 10-11 -RRB- denotes ]
T3553 13-23 NN denotes Incubation
T3554 24-28 IN denotes with
T3555 29-32 DT denotes the
T3556 33-36 NN denotes TLR
T3557 37-45 NN denotes agonists
T3558 46-49 IN denotes for
T3559 50-52 CD denotes 24
T3560 53-58 NN denotes hours
T3561 59-67 VB denotes resulted
T3562 68-70 IN denotes in
T3563 71-80 VB denotes increased
T3564 81-91 NN denotes expression
T3565 92-94 IN denotes of
T3566 95-99 NN denotes CD40
T3567 99-100 -COMMA- denotes ,
T3568 101-105 NN denotes CD80
T3569 105-106 -COMMA- denotes ,
T3570 107-110 CC denotes and
T3571 111-115 NN denotes CD86
T3572 116-118 IN denotes on
T3573 119-123 NN denotes BMDC
T3574 123-124 -COLON- denotes ;
T3575 125-132 RB denotes however
T3576 132-133 -COMMA- denotes ,
T3577 134-139 EX denotes there
T3578 140-143 VB denotes was
T3579 144-146 DT denotes no
T3580 147-157 NN denotes difference
T3581 158-160 IN denotes in
T3582 161-164 DT denotes the
T3583 165-175 NN denotes expression
T3584 176-182 NN denotes levels
T3585 183-185 IN denotes of
T3586 186-191 DT denotes these
T3587 192-199 NN denotes markers
T3588 200-207 IN denotes between
T3589 208-210 NN denotes WT
T3590 211-214 CC denotes and
T3591 215-219 NN denotes cpdm
T3592 220-224 NN denotes BMDC
T3593 225-226 -LRB- denotes (
T3594 226-230 NN denotes Fig.
T3595 231-233 NN denotes 2B
T3596 233-234 -RRB- denotes )
T3597 236-240 RB denotes Thus
T3598 240-241 -COMMA- denotes ,
T3599 242-249 NN denotes SHARPIN
T3600 250-260 NN denotes deficiency
T3601 261-264 VB denotes did
T3602 265-268 RB denotes not
T3603 269-278 VB denotes influence
T3604 279-282 DT denotes the
R2986 T3547 T3546 arg2Of 17,[
R2987 T3548 T3546 arg3Of ],[
R2988 T3551 T3550 arg2Of 18,[
R2989 T3552 T3550 arg3Of ],[
R2990 T3553 T3554 arg1Of Incubation,with
R2991 T3553 T3561 arg1Of Incubation,resulted
R2992 T3557 T3554 arg2Of agonists,with
R2993 T3557 T3555 arg1Of agonists,the
R2994 T3557 T3556 arg1Of agonists,TLR
R2995 T3557 T3558 arg1Of agonists,for
R2996 T3560 T3558 arg2Of hours,for
R2997 T3560 T3559 arg1Of hours,24
R2998 T3561 T3562 arg1Of resulted,in
R2999 T3561 T3574 arg1Of resulted,;
R3000 T3564 T3562 arg2Of expression,in
R3001 T3564 T3563 arg2Of expression,increased
R3002 T3564 T3565 arg1Of expression,of
R3003 T3564 T3572 arg1Of expression,on
R3004 T3566 T3567 arg1Of CD40,","
R3005 T3567 T3570 arg1Of ",",and
R3006 T3568 T3567 arg2Of CD80,","
R3007 T3570 T3565 arg2Of and,of
R3008 T3570 T3569 arg1Of and,","
R3009 T3571 T3570 arg2Of CD86,and
R3010 T3573 T3572 arg2Of BMDC,on
R3011 T3577 T3578 arg1Of there,was
R3012 T3578 T3574 arg2Of was,;
R3013 T3578 T3575 arg1Of was,however
R3014 T3578 T3576 arg1Of was,","
R3015 T3580 T3578 arg2Of difference,was
R3016 T3580 T3579 arg1Of difference,no
R3017 T3580 T3581 arg1Of difference,in
R3018 T3580 T3588 arg1Of difference,between
R3019 T3584 T3581 arg2Of levels,in
R3020 T3584 T3582 arg1Of levels,the
R3021 T3584 T3583 arg1Of levels,expression
R3022 T3584 T3585 arg1Of levels,of
R3023 T3587 T3585 arg2Of markers,of
R3024 T3587 T3586 arg1Of markers,these
R3025 T3589 T3590 arg1Of WT,and
R3026 T3590 T3588 arg2Of and,between
R3027 T3592 T3590 arg2Of BMDC,and
R3028 T3592 T3591 arg1Of BMDC,cpdm
R3029 T3592 T3593 arg1Of BMDC,(
R3030 T3595 T3593 arg2Of 2B,(
R3031 T3595 T3594 arg1Of 2B,Fig.
R3032 T3596 T3593 arg3Of ),(
R3033 T3600 T3599 arg1Of deficiency,SHARPIN
R3034 T3600 T3601 arg1Of deficiency,did
R3035 T3600 T3603 arg1Of deficiency,influence
R3036 T3603 T3597 arg1Of influence,Thus
R3037 T3603 T3598 arg1Of influence,","
R3038 T3603 T3601 arg2Of influence,did
R3039 T3603 T3602 arg1Of influence,not

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T3611 186-199 Anaphor denotes these markers
T3612 95-99 Antecedent denotes CD40
T3613 101-105 Antecedent denotes CD80
T3614 111-115 Antecedent denotes CD86
R3047 T3611 T3612 boundBy these markers,CD40
R3048 T3611 T3613 boundBy these markers,CD80
R3049 T3611 T3614 boundBy these markers,CD86

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3173 1-2 NNP denotes [
T3174 2-4 CD denotes 17
T3175 4-5 NNP denotes ]
T3176 5-6 , denotes ,
T3177 7-8 NNP denotes [
T3178 8-10 CD denotes 18
T3179 10-11 NNP denotes ]
T3180 11-12 . denotes .
T3181 13-23 NNP denotes Incubation
T3182 24-28 IN denotes with
T3183 29-32 DT denotes the
T3184 33-36 NNP denotes TLR
T3185 37-45 NNS denotes agonists
T3186 46-49 IN denotes for
T3187 50-52 CD denotes 24
T3188 53-58 NNS denotes hours
T3189 59-67 VBD denotes resulted
T3190 68-70 IN denotes in
T3191 71-80 VBN denotes increased
T3192 81-91 NN denotes expression
T3193 92-94 IN denotes of
T3194 95-99 NNP denotes CD40
T3195 99-100 , denotes ,
T3196 101-105 NNP denotes CD80
T3197 105-106 , denotes ,
T3198 107-110 CC denotes and
T3199 111-115 NNP denotes CD86
T3200 116-118 IN denotes on
T3201 119-123 NNP denotes BMDC
T3202 123-124 : denotes ;
T3203 125-132 RB denotes however
T3204 132-133 , denotes ,
T3205 134-139 EX denotes there
T3206 140-143 VBD denotes was
T3207 144-146 DT denotes no
T3208 147-157 NN denotes difference
T3209 158-160 IN denotes in
T3210 161-164 DT denotes the
T3211 165-175 NN denotes expression
T3212 176-182 NNS denotes levels
T3213 183-185 IN denotes of
T3214 186-191 DT denotes these
T3215 192-199 NNS denotes markers
T3216 200-207 IN denotes between
T3217 208-210 NNP denotes WT
T3218 211-214 CC denotes and
T3219 215-219 VB denotes cpdm
T3220 220-224 NNP denotes BMDC
T3221 225-226 -LRB- denotes (
T3222 226-230 NNP denotes Fig.
T3223 231-233 NNP denotes 2B
T3224 233-234 -RRB- denotes )
T3225 234-235 . denotes .
T3226 236-240 RB denotes Thus
T3227 240-241 , denotes ,
T3228 242-249 NNP denotes SHARPIN
T3229 250-260 NN denotes deficiency
T3230 261-264 VBD denotes did
T3231 265-268 RB denotes not
T3232 269-278 VB denotes influence
T3233 279-282 DT denotes the
R2618 T3173 T3175 nmod [,]
R2619 T3174 T3175 nummod 17,]
R2620 T3175 T3177 nmod ],[
R2621 T3176 T3177 punct ",",[
R2622 T3177 T3179 nmod [,]
R2623 T3178 T3179 nummod 18,]
R2626 T3181 T3189 nsubj Incubation,resulted
R2627 T3182 T3181 prep with,Incubation
R2628 T3183 T3185 det the,agonists
R2629 T3184 T3185 compound TLR,agonists
R2630 T3185 T3182 pobj agonists,with
R2631 T3186 T3181 prep for,Incubation
R2632 T3187 T3188 nummod 24,hours
R2633 T3188 T3186 pobj hours,for
R2634 T3189 T3206 ccomp resulted,was
R2650 T3205 T3206 expl there,was
R2651 T3206 T3206 ROOT was,was
R2652 T3207 T3208 det no,difference
R2653 T3208 T3206 attr difference,was
R2654 T3209 T3208 prep in,difference
R2655 T3210 T3212 det the,levels
R2656 T3211 T3212 compound expression,levels
R2657 T3212 T3209 pobj levels,in
R2658 T3213 T3212 prep of,levels
R2659 T3214 T3215 det these,markers
R2660 T3215 T3213 pobj markers,of
R2661 T3216 T3215 prep between,markers
R2662 T3217 T3216 pobj WT,between
R2663 T3218 T3217 cc and,WT
R2664 T3219 T3220 compound cpdm,BMDC
R2665 T3220 T3217 conj BMDC,WT
R2666 T3221 T3223 punct (,2B
R2667 T3222 T3223 compound Fig.,2B
R2668 T3223 T3220 appos 2B,BMDC
R2669 T3224 T3223 punct ),2B
R2670 T3225 T3206 punct .,was
R2671 T3226 T3232 advmod Thus,influence
R2672 T3227 T3232 punct ",",influence
R2673 T3228 T3229 compound SHARPIN,deficiency
R2674 T3229 T3232 nsubj deficiency,influence
R2675 T3230 T3232 aux did,influence
R2676 T3231 T3232 neg not,influence
R2677 T3232 T3232 ROOT influence,influence
R2635 T3190 T3189 prep in,resulted
R2636 T3191 T3192 amod increased,expression
R2637 T3192 T3190 pobj expression,in
R2638 T3193 T3192 prep of,expression
R2639 T3194 T3193 pobj CD40,of
R2640 T3195 T3194 punct ",",CD40
R2641 T3196 T3194 conj CD80,CD40
R2642 T3197 T3196 punct ",",CD80
R2643 T3198 T3196 cc and,CD80
R2644 T3199 T3196 conj CD86,CD80
R2645 T3200 T3199 prep on,CD86
R2646 T3201 T3200 pobj BMDC,on
R2647 T3202 T3206 punct ;,was
R2648 T3203 T3206 advmod however,was
R2649 T3204 T3206 punct ",",was

sentences

Id Subject Object Predicate Lexical cue
T2883 13-235 Sentence denotes Incubation with the TLR agonists for 24 hours resulted in increased expression of CD40, CD80, and CD86 on BMDC; however, there was no difference in the expression levels of these markers between WT and cpdm BMDC (Fig. 2B).
T70 13-235 Sentence denotes Incubation with the TLR agonists for 24 hours resulted in increased expression of CD40, CD80, and CD86 on BMDC; however, there was no difference in the expression levels of these markers between WT and cpdm BMDC (Fig. 2B).

events-check-again

Id Subject Object Predicate Lexical cue Negation
T3753 59-67 Positive_regulation denotes resulted
T3754 59-67 Positive_regulation denotes resulted
T3755 59-67 Positive_regulation denotes resulted
T3756 71-80 Positive_regulation denotes increased
T3757 71-80 Positive_regulation denotes increased
T3758 71-80 Positive_regulation denotes increased
T3759 81-91 Gene_expression denotes expression
T3760 81-91 Gene_expression denotes expression
T3761 81-91 Gene_expression denotes expression
T3762 95-99 Protein denotes CD40
T3763 101-105 Protein denotes CD80
T3764 111-115 Protein denotes CD86
T3765 147-157 Regulation denotes difference true
T3766 147-157 Regulation denotes difference true
T3767 147-157 Regulation denotes difference true
T3768 165-175 Gene_expression denotes expression
T3769 165-175 Gene_expression denotes expression
T3770 165-175 Gene_expression denotes expression
T3771 242-249 Protein denotes SHARPIN
T3772 250-260 Negative_regulation denotes deficiency
R3097 T3756 T3753 themeOf increased,resulted
R3098 T3757 T3754 themeOf increased,resulted
R3099 T3758 T3755 themeOf increased,resulted
R3100 T3759 T3757 themeOf expression,increased
R3101 T3760 T3758 themeOf expression,increased
R3102 T3761 T3756 themeOf expression,increased
R3103 T3762 T3759 themeOf CD40,expression
R3104 T3762 T3768 themeOf CD40,expression
R3105 T3763 T3760 themeOf CD80,expression
R3106 T3763 T3769 themeOf CD80,expression
R3107 T3764 T3761 themeOf CD86,expression
R3108 T3764 T3770 themeOf CD86,expression
R3109 T3768 T3765 themeOf expression,difference
R3110 T3769 T3766 themeOf expression,difference
R3111 T3770 T3767 themeOf expression,difference
R3112 T3771 T3772 themeOf SHARPIN,deficiency

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T3242 59-67 Positive_regulation denotes resulted
T3243 71-80 Positive_regulation denotes increased
T3244 81-91 Gene_expression denotes expression
T3245 81-91 Gene_expression denotes expression
T3246 81-91 Gene_expression denotes expression
T3247 147-157 Regulation denotes difference true
T3248 165-175 Gene_expression denotes expression
T3249 147-157 Regulation denotes difference true
T3250 165-175 Gene_expression denotes expression
T3251 147-157 Regulation denotes difference true
T3253 165-175 Gene_expression denotes expression
T3254 250-260 Negative_regulation denotes deficiency
T3258 59-67 Positive_regulation denotes resulted
T3259 71-80 Positive_regulation denotes increased
T3260 59-67 Positive_regulation denotes resulted
T3261 71-80 Positive_regulation denotes increased
T3269 95-99 Protein denotes CD40
T3270 101-105 Protein denotes CD80
T3271 111-115 Protein denotes CD86
T3272 242-249 Protein denotes SHARPIN
R2686 T3243 T3242 themeOf increased,resulted
R2687 T3244 T3259 themeOf expression,increased
R2688 T3245 T3261 themeOf expression,increased
R2689 T3246 T3243 themeOf expression,increased
R2690 T3248 T3247 themeOf expression,difference
R2691 T3250 T3249 themeOf expression,difference
R2692 T3253 T3251 themeOf expression,difference
R2693 T3259 T3258 themeOf increased,resulted
R2694 T3261 T3260 themeOf increased,resulted
R2698 T3269 T3244 themeOf CD40,expression
R2699 T3269 T3248 themeOf CD40,expression
R2700 T3270 T3245 themeOf CD80,expression
R2701 T3270 T3250 themeOf CD80,expression
R2702 T3271 T3246 themeOf CD86,expression
R2703 T3271 T3253 themeOf CD86,expression
R2704 T3272 T3254 themeOf SHARPIN,deficiency

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3628 95-99 P25942 denotes CD40
T3629 101-105 P33681 denotes CD80
T3630 111-115 P42081 denotes CD86
T3631 242-249 Q9H0F6 denotes SHARPIN

test2

Id Subject Object Predicate Lexical cue
T2856 59-67 Positive_regulation denotes resulted
T2857 71-80 Positive_regulation denotes increased
T2858 81-91 Gene_expression denotes expression
T2859 95-99 Protein denotes CD40
T2860 101-105 Protein denotes CD80
T2861 111-115 Protein denotes CD86
T2862 242-249 Protein denotes SHARPIN
T2863 250-260 Negative_regulation denotes deficiency
R2324 T2857 T2856 themeOf increased,resulted
R2325 T2858 T2857 themeOf expression,increased
R2326 T2859 T2858 themeOf CD40,expression
R2327 T2860 T2858 themeOf CD80,expression
R2328 T2861 T2858 themeOf CD86,expression
R2329 T2862 T2863 themeOf SHARPIN,deficiency