PMC:3279418 / 840-1074
Annnotations
pmc-enju-pas
{"project":"pmc-enju-pas","denotations":[{"id":"T518","span":{"begin":0,"end":2},"obj":"IN"},{"id":"T519","span":{"begin":3,"end":11},"obj":"NN"},{"id":"T520","span":{"begin":12,"end":14},"obj":"TO"},{"id":"T521","span":{"begin":15,"end":24},"obj":"JJ"},{"id":"T522","span":{"begin":25,"end":33},"obj":"NN"},{"id":"T523","span":{"begin":34,"end":35},"obj":"-LRB-"},{"id":"T524","span":{"begin":35,"end":38},"obj":"NN"},{"id":"T525","span":{"begin":38,"end":39},"obj":"-RRB-"},{"id":"T526","span":{"begin":40,"end":48},"obj":"NN"},{"id":"T527","span":{"begin":49,"end":52},"obj":"NN"},{"id":"T528","span":{"begin":53,"end":56},"obj":"CC"},{"id":"T529","span":{"begin":57,"end":61},"obj":"NN"},{"id":"T530","span":{"begin":62,"end":63},"obj":"NN"},{"id":"T531","span":{"begin":63,"end":64},"obj":"-COLON-"},{"id":"T532","span":{"begin":64,"end":65},"obj":"NN"},{"id":"T533","span":{"begin":65,"end":66},"obj":"-COMMA-"},{"id":"T534","span":{"begin":67,"end":75},"obj":"VB"},{"id":"T535","span":{"begin":76,"end":80},"obj":"NN"},{"id":"T536","span":{"begin":81,"end":95},"obj":"JJ"},{"id":"T537","span":{"begin":96,"end":105},"obj":"JJ"},{"id":"T538","span":{"begin":106,"end":111},"obj":"NN"},{"id":"T539","span":{"begin":112,"end":113},"obj":"-LRB-"},{"id":"T540","span":{"begin":113,"end":117},"obj":"NN"},{"id":"T541","span":{"begin":117,"end":118},"obj":"-RRB-"},{"id":"T542","span":{"begin":119,"end":123},"obj":"IN"},{"id":"T543","span":{"begin":124,"end":126},"obj":"NN"},{"id":"T544","span":{"begin":127,"end":130},"obj":"CC"},{"id":"T545","span":{"begin":131,"end":137},"obj":"JJ"},{"id":"T546","span":{"begin":138,"end":142},"obj":"NN"},{"id":"T547","span":{"begin":143,"end":152},"obj":"VB"},{"id":"T548","span":{"begin":153,"end":160},"obj":"JJ"},{"id":"T549","span":{"begin":161,"end":170},"obj":"NN"},{"id":"T550","span":{"begin":171,"end":173},"obj":"IN"},{"id":"T551","span":{"begin":174,"end":184},"obj":"NN"},{"id":"T552","span":{"begin":185,"end":187},"obj":"IN"},{"id":"T553","span":{"begin":188,"end":202},"obj":"JJ"},{"id":"T554","span":{"begin":203,"end":212},"obj":"NN"},{"id":"T555","span":{"begin":213,"end":217},"obj":"NN"},{"id":"T556","span":{"begin":217,"end":218},"obj":"-COMMA-"},{"id":"T557","span":{"begin":219,"end":223},"obj":"NN"},{"id":"T558","span":{"begin":223,"end":224},"obj":"-COMMA-"},{"id":"T559","span":{"begin":225,"end":228},"obj":"CC"},{"id":"T560","span":{"begin":229,"end":233},"obj":"NN"}],"relations":[{"id":"R436","pred":"arg2Of","subj":"T519","obj":"T518"},{"id":"R437","pred":"arg1Of","subj":"T519","obj":"T520"},{"id":"R438","pred":"arg2Of","subj":"T524","obj":"T523"},{"id":"R439","pred":"arg3Of","subj":"T525","obj":"T523"},{"id":"R440","pred":"arg1Of","subj":"T527","obj":"T521"},{"id":"R441","pred":"arg1Of","subj":"T527","obj":"T522"},{"id":"R442","pred":"arg1Of","subj":"T527","obj":"T523"},{"id":"R443","pred":"arg1Of","subj":"T527","obj":"T526"},{"id":"R444","pred":"arg1Of","subj":"T527","obj":"T528"},{"id":"R445","pred":"arg2Of","subj":"T528","obj":"T520"},{"id":"R446","pred":"arg1Of","subj":"T530","obj":"T531"},{"id":"R447","pred":"arg2Of","subj":"T531","obj":"T528"},{"id":"R448","pred":"arg1Of","subj":"T531","obj":"T529"},{"id":"R449","pred":"arg2Of","subj":"T532","obj":"T531"},{"id":"R450","pred":"arg2Of","subj":"T538","obj":"T534"},{"id":"R451","pred":"arg1Of","subj":"T538","obj":"T535"},{"id":"R452","pred":"arg1Of","subj":"T538","obj":"T536"},{"id":"R453","pred":"arg1Of","subj":"T538","obj":"T537"},{"id":"R454","pred":"arg1Of","subj":"T538","obj":"T539"},{"id":"R455","pred":"arg1Of","subj":"T538","obj":"T542"},{"id":"R456","pred":"arg1Of","subj":"T538","obj":"T547"},{"id":"R457","pred":"arg2Of","subj":"T540","obj":"T539"},{"id":"R458","pred":"arg3Of","subj":"T541","obj":"T539"},{"id":"R459","pred":"arg1Of","subj":"T543","obj":"T544"},{"id":"R460","pred":"arg2Of","subj":"T545","obj":"T544"},{"id":"R461","pred":"arg2Of","subj":"T546","obj":"T542"},{"id":"R462","pred":"arg1Of","subj":"T546","obj":"T543"},{"id":"R463","pred":"arg1Of","subj":"T546","obj":"T545"},{"id":"R464","pred":"arg1Of","subj":"T547","obj":"T518"},{"id":"R465","pred":"arg1Of","subj":"T547","obj":"T533"},{"id":"R466","pred":"arg2Of","subj":"T549","obj":"T547"},{"id":"R467","pred":"arg1Of","subj":"T549","obj":"T548"},{"id":"R468","pred":"arg1Of","subj":"T549","obj":"T550"},{"id":"R469","pred":"arg2Of","subj":"T551","obj":"T550"},{"id":"R470","pred":"arg1Of","subj":"T551","obj":"T552"},{"id":"R471","pred":"arg1Of","subj":"T555","obj":"T556"},{"id":"R472","pred":"arg1Of","subj":"T556","obj":"T559"},{"id":"R473","pred":"arg2Of","subj":"T557","obj":"T556"},{"id":"R474","pred":"arg2Of","subj":"T559","obj":"T552"},{"id":"R475","pred":"arg1Of","subj":"T559","obj":"T553"},{"id":"R476","pred":"arg1Of","subj":"T559","obj":"T554"},{"id":"R477","pred":"arg1Of","subj":"T559","obj":"T558"},{"id":"R478","pred":"arg2Of","subj":"T560","obj":"T559"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"In response to TOLL-like receptor (TLR) agonists LPS and poly I:C, cultured bone marrow-derived dendritic cells (BMDC) from WT and mutant mice exhibited similar increases in expression of co-stimulatory molecules CD40, CD80, and CD86."}
bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T242","span":{"begin":0,"end":2},"obj":"IN"},{"id":"T243","span":{"begin":3,"end":11},"obj":"NN"},{"id":"T244","span":{"begin":12,"end":14},"obj":"TO"},{"id":"T245","span":{"begin":15,"end":24},"obj":"JJ"},{"id":"T246","span":{"begin":25,"end":33},"obj":"NN"},{"id":"T247","span":{"begin":34,"end":35},"obj":"-LRB-"},{"id":"T248","span":{"begin":35,"end":38},"obj":"NNP"},{"id":"T249","span":{"begin":38,"end":39},"obj":"-RRB-"},{"id":"T250","span":{"begin":40,"end":48},"obj":"VBZ"},{"id":"T251","span":{"begin":49,"end":52},"obj":"NNP"},{"id":"T252","span":{"begin":53,"end":56},"obj":"CC"},{"id":"T253","span":{"begin":57,"end":61},"obj":"RB"},{"id":"T254","span":{"begin":62,"end":63},"obj":"PRP"},{"id":"T255","span":{"begin":63,"end":64},"obj":":"},{"id":"T256","span":{"begin":64,"end":65},"obj":"NNP"},{"id":"T257","span":{"begin":65,"end":66},"obj":","},{"id":"T258","span":{"begin":67,"end":75},"obj":"VBD"},{"id":"T259","span":{"begin":76,"end":80},"obj":"NN"},{"id":"T260","span":{"begin":81,"end":95},"obj":"JJ"},{"id":"T261","span":{"begin":96,"end":105},"obj":"JJ"},{"id":"T262","span":{"begin":106,"end":111},"obj":"NNS"},{"id":"T263","span":{"begin":112,"end":113},"obj":"-LRB-"},{"id":"T264","span":{"begin":113,"end":117},"obj":"NNP"},{"id":"T265","span":{"begin":117,"end":118},"obj":"-RRB-"},{"id":"T266","span":{"begin":119,"end":123},"obj":"IN"},{"id":"T267","span":{"begin":124,"end":126},"obj":"NNP"},{"id":"T268","span":{"begin":127,"end":130},"obj":"CC"},{"id":"T269","span":{"begin":131,"end":137},"obj":"JJ"},{"id":"T270","span":{"begin":138,"end":142},"obj":"NNS"},{"id":"T271","span":{"begin":143,"end":152},"obj":"VBD"},{"id":"T272","span":{"begin":153,"end":160},"obj":"JJ"},{"id":"T273","span":{"begin":161,"end":170},"obj":"NNS"},{"id":"T274","span":{"begin":171,"end":173},"obj":"IN"},{"id":"T275","span":{"begin":174,"end":184},"obj":"NN"},{"id":"T276","span":{"begin":185,"end":187},"obj":"IN"},{"id":"T277","span":{"begin":188,"end":202},"obj":"JJ"},{"id":"T278","span":{"begin":203,"end":212},"obj":"NNS"},{"id":"T279","span":{"begin":213,"end":217},"obj":"NNP"},{"id":"T280","span":{"begin":217,"end":218},"obj":","},{"id":"T281","span":{"begin":219,"end":223},"obj":"NNP"},{"id":"T282","span":{"begin":223,"end":224},"obj":","},{"id":"T283","span":{"begin":225,"end":228},"obj":"CC"},{"id":"T284","span":{"begin":229,"end":233},"obj":"NNP"},{"id":"T285","span":{"begin":233,"end":234},"obj":"."}],"relations":[{"id":"R158","pred":"nmod","subj":"T242","obj":"T250"},{"id":"R159","pred":"pobj","subj":"T243","obj":"T242"},{"id":"R160","pred":"prep","subj":"T244","obj":"T243"},{"id":"R161","pred":"amod","subj":"T245","obj":"T246"},{"id":"R162","pred":"pobj","subj":"T246","obj":"T244"},{"id":"R163","pred":"punct","subj":"T247","obj":"T248"},{"id":"R164","pred":"appos","subj":"T248","obj":"T246"},{"id":"R165","pred":"punct","subj":"T249","obj":"T242"},{"id":"R166","pred":"ROOT","subj":"T250","obj":"T250"},{"id":"R167","pred":"dobj","subj":"T251","obj":"T250"},{"id":"R168","pred":"cc","subj":"T252","obj":"T250"},{"id":"R169","pred":"advmod","subj":"T253","obj":"T258"},{"id":"R170","pred":"nsubj","subj":"T254","obj":"T258"},{"id":"R171","pred":"punct","subj":"T255","obj":"T256"},{"id":"R172","pred":"npadvmod","subj":"T256","obj":"T258"},{"id":"R173","pred":"punct","subj":"T257","obj":"T258"},{"id":"R174","pred":"conj","subj":"T258","obj":"T250"},{"id":"R175","pred":"nmod","subj":"T259","obj":"T262"},{"id":"R176","pred":"amod","subj":"T260","obj":"T262"},{"id":"R177","pred":"amod","subj":"T261","obj":"T262"},{"id":"R178","pred":"dobj","subj":"T262","obj":"T258"},{"id":"R179","pred":"punct","subj":"T263","obj":"T264"},{"id":"R180","pred":"appos","subj":"T264","obj":"T262"},{"id":"R181","pred":"punct","subj":"T265","obj":"T264"},{"id":"R182","pred":"prep","subj":"T266","obj":"T264"},{"id":"R183","pred":"pobj","subj":"T267","obj":"T266"},{"id":"R184","pred":"cc","subj":"T268","obj":"T264"},{"id":"R185","pred":"amod","subj":"T269","obj":"T270"},{"id":"R186","pred":"conj","subj":"T270","obj":"T264"},{"id":"R187","pred":"conj","subj":"T271","obj":"T258"},{"id":"R188","pred":"amod","subj":"T272","obj":"T273"},{"id":"R189","pred":"dobj","subj":"T273","obj":"T271"},{"id":"R190","pred":"prep","subj":"T274","obj":"T273"},{"id":"R191","pred":"pobj","subj":"T275","obj":"T274"},{"id":"R192","pred":"prep","subj":"T276","obj":"T275"},{"id":"R193","pred":"amod","subj":"T277","obj":"T278"},{"id":"R194","pred":"pobj","subj":"T278","obj":"T276"},{"id":"R195","pred":"conj","subj":"T279","obj":"T273"},{"id":"R196","pred":"punct","subj":"T280","obj":"T279"},{"id":"R197","pred":"conj","subj":"T281","obj":"T279"},{"id":"R198","pred":"punct","subj":"T282","obj":"T281"},{"id":"R199","pred":"cc","subj":"T283","obj":"T281"},{"id":"R200","pred":"conj","subj":"T284","obj":"T281"},{"id":"R201","pred":"punct","subj":"T285","obj":"T258"}],"text":"In response to TOLL-like receptor (TLR) agonists LPS and poly I:C, cultured bone marrow-derived dendritic cells (BMDC) from WT and mutant mice exhibited similar increases in expression of co-stimulatory molecules CD40, CD80, and CD86."}
UBERON-AE
{"project":"UBERON-AE","denotations":[{"id":"T70","span":{"begin":76,"end":87},"obj":"http://purl.obolibrary.org/obo/UBERON_0002371"}],"text":"In response to TOLL-like receptor (TLR) agonists LPS and poly I:C, cultured bone marrow-derived dendritic cells (BMDC) from WT and mutant mice exhibited similar increases in expression of co-stimulatory molecules CD40, CD80, and CD86."}
GO-CC
{"project":"GO-CC","denotations":[{"id":"T728","span":{"begin":106,"end":111},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"In response to TOLL-like receptor (TLR) agonists LPS and poly I:C, cultured bone marrow-derived dendritic cells (BMDC) from WT and mutant mice exhibited similar increases in expression of co-stimulatory molecules CD40, CD80, and CD86."}
sentences
{"project":"sentences","denotations":[{"id":"T113","span":{"begin":0,"end":234},"obj":"Sentence"},{"id":"T8","span":{"begin":0,"end":234},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"In response to TOLL-like receptor (TLR) agonists LPS and poly I:C, cultured bone marrow-derived dendritic cells (BMDC) from WT and mutant mice exhibited similar increases in expression of co-stimulatory molecules CD40, CD80, and CD86."}
events-check-again
{"project":"events-check-again","denotations":[{"id":"T812","span":{"begin":213,"end":217},"obj":"Protein"},{"id":"T813","span":{"begin":219,"end":223},"obj":"Protein"},{"id":"T814","span":{"begin":229,"end":233},"obj":"Protein"}],"text":"In response to TOLL-like receptor (TLR) agonists LPS and poly I:C, cultured bone marrow-derived dendritic cells (BMDC) from WT and mutant mice exhibited similar increases in expression of co-stimulatory molecules CD40, CD80, and CD86."}
bionlp-st-ge-2016-reference-tees
{"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T863","span":{"begin":15,"end":33},"obj":"Protein"},{"id":"T864","span":{"begin":35,"end":38},"obj":"Protein"},{"id":"T865","span":{"begin":213,"end":217},"obj":"Protein"},{"id":"T866","span":{"begin":219,"end":223},"obj":"Protein"},{"id":"T867","span":{"begin":229,"end":233},"obj":"Protein"},{"id":"T868","span":{"begin":174,"end":184},"obj":"Gene_expression"},{"id":"T869","span":{"begin":174,"end":184},"obj":"Gene_expression"},{"id":"T870","span":{"begin":174,"end":184},"obj":"Gene_expression"},{"id":"T871","span":{"begin":161,"end":170},"obj":"Positive_regulation"},{"id":"T872","span":{"begin":161,"end":170},"obj":"Positive_regulation"},{"id":"T873","span":{"begin":161,"end":170},"obj":"Positive_regulation"}],"relations":[{"id":"R644","pred":"themeOf","subj":"T865","obj":"T868"},{"id":"R645","pred":"themeOf","subj":"T866","obj":"T869"},{"id":"R646","pred":"themeOf","subj":"T867","obj":"T870"},{"id":"R647","pred":"themeOf","subj":"T868","obj":"T871"},{"id":"R648","pred":"themeOf","subj":"T869","obj":"T872"},{"id":"R649","pred":"themeOf","subj":"T870","obj":"T873"}],"text":"In response to TOLL-like receptor (TLR) agonists LPS and poly I:C, cultured bone marrow-derived dendritic cells (BMDC) from WT and mutant mice exhibited similar increases in expression of co-stimulatory molecules CD40, CD80, and CD86."}
bionlp-st-ge-2016-reference
{"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T81","span":{"begin":213,"end":217},"obj":"Protein"},{"id":"T82","span":{"begin":219,"end":223},"obj":"Protein"},{"id":"T83","span":{"begin":229,"end":233},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"In response to TOLL-like receptor (TLR) agonists LPS and poly I:C, cultured bone marrow-derived dendritic cells (BMDC) from WT and mutant mice exhibited similar increases in expression of co-stimulatory molecules CD40, CD80, and CD86."}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T672","span":{"begin":213,"end":217},"obj":"P25942"},{"id":"T673","span":{"begin":219,"end":223},"obj":"P33681"},{"id":"T674","span":{"begin":229,"end":233},"obj":"P42081"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"In response to TOLL-like receptor (TLR) agonists LPS and poly I:C, cultured bone marrow-derived dendritic cells (BMDC) from WT and mutant mice exhibited similar increases in expression of co-stimulatory molecules CD40, CD80, and CD86."}
test2
{"project":"test2","denotations":[{"id":"T50","span":{"begin":219,"end":223},"obj":"Protein"},{"id":"T51","span":{"begin":229,"end":233},"obj":"Protein"},{"id":"T47","span":{"begin":161,"end":170},"obj":"Positive_regulation"},{"id":"T48","span":{"begin":174,"end":184},"obj":"Gene_expression"},{"id":"T49","span":{"begin":213,"end":217},"obj":"Protein"}],"relations":[{"id":"R669","pred":"themeOf","subj":"T48","obj":"T47"},{"id":"R670","pred":"themeOf","subj":"T49","obj":"T48"},{"id":"R23","pred":"themeOf","subj":"T50","obj":"T48"},{"id":"R24","pred":"themeOf","subj":"T51","obj":"T48"}],"text":"In response to TOLL-like receptor (TLR) agonists LPS and poly I:C, cultured bone marrow-derived dendritic cells (BMDC) from WT and mutant mice exhibited similar increases in expression of co-stimulatory molecules CD40, CD80, and CD86."}