PMC:3279418 / 840-1074
Annnotations
pmc-enju-pas
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T518 | 0-2 | IN | denotes | In |
T519 | 3-11 | NN | denotes | response |
T520 | 12-14 | TO | denotes | to |
T521 | 15-24 | JJ | denotes | TOLL-like |
T522 | 25-33 | NN | denotes | receptor |
T523 | 34-35 | -LRB- | denotes | ( |
T524 | 35-38 | NN | denotes | TLR |
T525 | 38-39 | -RRB- | denotes | ) |
T526 | 40-48 | NN | denotes | agonists |
T527 | 49-52 | NN | denotes | LPS |
T528 | 53-56 | CC | denotes | and |
T529 | 57-61 | NN | denotes | poly |
T530 | 62-63 | NN | denotes | I |
T531 | 63-64 | -COLON- | denotes | : |
T532 | 64-65 | NN | denotes | C |
T533 | 65-66 | -COMMA- | denotes | , |
T534 | 67-75 | VB | denotes | cultured |
T535 | 76-80 | NN | denotes | bone |
T536 | 81-95 | JJ | denotes | marrow-derived |
T537 | 96-105 | JJ | denotes | dendritic |
T538 | 106-111 | NN | denotes | cells |
T539 | 112-113 | -LRB- | denotes | ( |
T540 | 113-117 | NN | denotes | BMDC |
T541 | 117-118 | -RRB- | denotes | ) |
T542 | 119-123 | IN | denotes | from |
T543 | 124-126 | NN | denotes | WT |
T544 | 127-130 | CC | denotes | and |
T545 | 131-137 | JJ | denotes | mutant |
T546 | 138-142 | NN | denotes | mice |
T547 | 143-152 | VB | denotes | exhibited |
T548 | 153-160 | JJ | denotes | similar |
T549 | 161-170 | NN | denotes | increases |
T550 | 171-173 | IN | denotes | in |
T551 | 174-184 | NN | denotes | expression |
T552 | 185-187 | IN | denotes | of |
T553 | 188-202 | JJ | denotes | co-stimulatory |
T554 | 203-212 | NN | denotes | molecules |
T555 | 213-217 | NN | denotes | CD40 |
T556 | 217-218 | -COMMA- | denotes | , |
T557 | 219-223 | NN | denotes | CD80 |
T558 | 223-224 | -COMMA- | denotes | , |
T559 | 225-228 | CC | denotes | and |
T560 | 229-233 | NN | denotes | CD86 |
R436 | T519 | T518 | arg2Of | response,In |
R437 | T519 | T520 | arg1Of | response,to |
R438 | T524 | T523 | arg2Of | TLR,( |
R439 | T525 | T523 | arg3Of | ),( |
R440 | T527 | T521 | arg1Of | LPS,TOLL-like |
R441 | T527 | T522 | arg1Of | LPS,receptor |
R442 | T527 | T523 | arg1Of | LPS,( |
R443 | T527 | T526 | arg1Of | LPS,agonists |
R444 | T527 | T528 | arg1Of | LPS,and |
R445 | T528 | T520 | arg2Of | and,to |
R446 | T530 | T531 | arg1Of | I,: |
R447 | T531 | T528 | arg2Of | :,and |
R448 | T531 | T529 | arg1Of | :,poly |
R449 | T532 | T531 | arg2Of | C,: |
R450 | T538 | T534 | arg2Of | cells,cultured |
R451 | T538 | T535 | arg1Of | cells,bone |
R452 | T538 | T536 | arg1Of | cells,marrow-derived |
R453 | T538 | T537 | arg1Of | cells,dendritic |
R454 | T538 | T539 | arg1Of | cells,( |
R455 | T538 | T542 | arg1Of | cells,from |
R456 | T538 | T547 | arg1Of | cells,exhibited |
R457 | T540 | T539 | arg2Of | BMDC,( |
R458 | T541 | T539 | arg3Of | ),( |
R459 | T543 | T544 | arg1Of | WT,and |
R460 | T545 | T544 | arg2Of | mutant,and |
R461 | T546 | T542 | arg2Of | mice,from |
R462 | T546 | T543 | arg1Of | mice,WT |
R463 | T546 | T545 | arg1Of | mice,mutant |
R464 | T547 | T518 | arg1Of | exhibited,In |
R465 | T547 | T533 | arg1Of | exhibited,"," |
R466 | T549 | T547 | arg2Of | increases,exhibited |
R467 | T549 | T548 | arg1Of | increases,similar |
R468 | T549 | T550 | arg1Of | increases,in |
R469 | T551 | T550 | arg2Of | expression,in |
R470 | T551 | T552 | arg1Of | expression,of |
R471 | T555 | T556 | arg1Of | CD40,"," |
R472 | T556 | T559 | arg1Of | ",",and |
R473 | T557 | T556 | arg2Of | CD80,"," |
R474 | T559 | T552 | arg2Of | and,of |
R475 | T559 | T553 | arg1Of | and,co-stimulatory |
R476 | T559 | T554 | arg1Of | and,molecules |
R477 | T559 | T558 | arg1Of | and,"," |
R478 | T560 | T559 | arg2Of | CD86,and |
bionlp-st-ge-2016-spacy-parsed
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T242 | 0-2 | IN | denotes | In |
T243 | 3-11 | NN | denotes | response |
T244 | 12-14 | TO | denotes | to |
T245 | 15-24 | JJ | denotes | TOLL-like |
T246 | 25-33 | NN | denotes | receptor |
T247 | 34-35 | -LRB- | denotes | ( |
T248 | 35-38 | NNP | denotes | TLR |
T249 | 38-39 | -RRB- | denotes | ) |
T250 | 40-48 | VBZ | denotes | agonists |
T251 | 49-52 | NNP | denotes | LPS |
T252 | 53-56 | CC | denotes | and |
T253 | 57-61 | RB | denotes | poly |
T254 | 62-63 | PRP | denotes | I |
T255 | 63-64 | : | denotes | : |
T256 | 64-65 | NNP | denotes | C |
T257 | 65-66 | , | denotes | , |
T258 | 67-75 | VBD | denotes | cultured |
T259 | 76-80 | NN | denotes | bone |
T260 | 81-95 | JJ | denotes | marrow-derived |
T261 | 96-105 | JJ | denotes | dendritic |
T262 | 106-111 | NNS | denotes | cells |
T263 | 112-113 | -LRB- | denotes | ( |
T264 | 113-117 | NNP | denotes | BMDC |
T265 | 117-118 | -RRB- | denotes | ) |
T266 | 119-123 | IN | denotes | from |
T267 | 124-126 | NNP | denotes | WT |
T268 | 127-130 | CC | denotes | and |
T269 | 131-137 | JJ | denotes | mutant |
T270 | 138-142 | NNS | denotes | mice |
T271 | 143-152 | VBD | denotes | exhibited |
T272 | 153-160 | JJ | denotes | similar |
T273 | 161-170 | NNS | denotes | increases |
T274 | 171-173 | IN | denotes | in |
T275 | 174-184 | NN | denotes | expression |
T276 | 185-187 | IN | denotes | of |
T277 | 188-202 | JJ | denotes | co-stimulatory |
T278 | 203-212 | NNS | denotes | molecules |
T279 | 213-217 | NNP | denotes | CD40 |
T280 | 217-218 | , | denotes | , |
T281 | 219-223 | NNP | denotes | CD80 |
T282 | 223-224 | , | denotes | , |
T283 | 225-228 | CC | denotes | and |
T284 | 229-233 | NNP | denotes | CD86 |
T285 | 233-234 | . | denotes | . |
R158 | T242 | T250 | nmod | In,agonists |
R159 | T243 | T242 | pobj | response,In |
R160 | T244 | T243 | prep | to,response |
R161 | T245 | T246 | amod | TOLL-like,receptor |
R162 | T246 | T244 | pobj | receptor,to |
R163 | T247 | T248 | punct | (,TLR |
R164 | T248 | T246 | appos | TLR,receptor |
R165 | T249 | T242 | punct | ),In |
R166 | T250 | T250 | ROOT | agonists,agonists |
R167 | T251 | T250 | dobj | LPS,agonists |
R168 | T252 | T250 | cc | and,agonists |
R169 | T253 | T258 | advmod | poly,cultured |
R170 | T254 | T258 | nsubj | I,cultured |
R171 | T255 | T256 | punct | :,C |
R172 | T256 | T258 | npadvmod | C,cultured |
R173 | T257 | T258 | punct | ",",cultured |
R174 | T258 | T250 | conj | cultured,agonists |
R175 | T259 | T262 | nmod | bone,cells |
R176 | T260 | T262 | amod | marrow-derived,cells |
R177 | T261 | T262 | amod | dendritic,cells |
R178 | T262 | T258 | dobj | cells,cultured |
R179 | T263 | T264 | punct | (,BMDC |
R180 | T264 | T262 | appos | BMDC,cells |
R181 | T265 | T264 | punct | ),BMDC |
R182 | T266 | T264 | prep | from,BMDC |
R183 | T267 | T266 | pobj | WT,from |
R184 | T268 | T264 | cc | and,BMDC |
R185 | T269 | T270 | amod | mutant,mice |
R186 | T270 | T264 | conj | mice,BMDC |
R187 | T271 | T258 | conj | exhibited,cultured |
R188 | T272 | T273 | amod | similar,increases |
R189 | T273 | T271 | dobj | increases,exhibited |
R190 | T274 | T273 | prep | in,increases |
R191 | T275 | T274 | pobj | expression,in |
R192 | T276 | T275 | prep | of,expression |
R193 | T277 | T278 | amod | co-stimulatory,molecules |
R194 | T278 | T276 | pobj | molecules,of |
R195 | T279 | T273 | conj | CD40,increases |
R196 | T280 | T279 | punct | ",",CD40 |
R197 | T281 | T279 | conj | CD80,CD40 |
R198 | T282 | T281 | punct | ",",CD80 |
R199 | T283 | T281 | cc | and,CD80 |
R200 | T284 | T281 | conj | CD86,CD80 |
R201 | T285 | T258 | punct | .,cultured |
UBERON-AE
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T70 | 76-87 | http://purl.obolibrary.org/obo/UBERON_0002371 | denotes | bone marrow |
GO-CC
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T728 | 106-111 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T113 | 0-234 | Sentence | denotes | In response to TOLL-like receptor (TLR) agonists LPS and poly I:C, cultured bone marrow-derived dendritic cells (BMDC) from WT and mutant mice exhibited similar increases in expression of co-stimulatory molecules CD40, CD80, and CD86. |
T8 | 0-234 | Sentence | denotes | In response to TOLL-like receptor (TLR) agonists LPS and poly I:C, cultured bone marrow-derived dendritic cells (BMDC) from WT and mutant mice exhibited similar increases in expression of co-stimulatory molecules CD40, CD80, and CD86. |
events-check-again
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T812 | 213-217 | Protein | denotes | CD40 |
T813 | 219-223 | Protein | denotes | CD80 |
T814 | 229-233 | Protein | denotes | CD86 |
bionlp-st-ge-2016-reference-tees
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T863 | 15-33 | Protein | denotes | TOLL-like receptor |
T864 | 35-38 | Protein | denotes | TLR |
T865 | 213-217 | Protein | denotes | CD40 |
T866 | 219-223 | Protein | denotes | CD80 |
T867 | 229-233 | Protein | denotes | CD86 |
T868 | 174-184 | Gene_expression | denotes | expression |
T869 | 174-184 | Gene_expression | denotes | expression |
T870 | 174-184 | Gene_expression | denotes | expression |
T871 | 161-170 | Positive_regulation | denotes | increases |
T872 | 161-170 | Positive_regulation | denotes | increases |
T873 | 161-170 | Positive_regulation | denotes | increases |
R644 | T865 | T868 | themeOf | CD40,expression |
R645 | T866 | T869 | themeOf | CD80,expression |
R646 | T867 | T870 | themeOf | CD86,expression |
R647 | T868 | T871 | themeOf | expression,increases |
R648 | T869 | T872 | themeOf | expression,increases |
R649 | T870 | T873 | themeOf | expression,increases |
bionlp-st-ge-2016-reference
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T81 | 213-217 | Protein | denotes | CD40 |
T82 | 219-223 | Protein | denotes | CD80 |
T83 | 229-233 | Protein | denotes | CD86 |
bionlp-st-ge-2016-uniprot
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T672 | 213-217 | P25942 | denotes | CD40 |
T673 | 219-223 | P33681 | denotes | CD80 |
T674 | 229-233 | P42081 | denotes | CD86 |
test2
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T50 | 219-223 | Protein | denotes | CD80 |
T51 | 229-233 | Protein | denotes | CD86 |
T47 | 161-170 | Positive_regulation | denotes | increases |
T48 | 174-184 | Gene_expression | denotes | expression |
T49 | 213-217 | Protein | denotes | CD40 |
R669 | T48 | T47 | themeOf | expression,increases |
R670 | T49 | T48 | themeOf | CD40,expression |
R23 | T50 | T48 | themeOf | CD80,expression |
R24 | T51 | T48 | themeOf | CD86,expression |