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PMC:3279418 / 6903-7142 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T13148 0-10 NN denotes Fibroblast
T13149 11-12 -LRB- denotes (
T13150 12-18 NN denotes NIH3T3
T13151 18-19 -RRB- denotes )
T13152 20-23 CC denotes and
T13153 24-35 NN denotes macrophages
T13154 36-37 -LRB- denotes (
T13155 37-45 NN denotes RAW264.7
T13156 45-46 -RRB- denotes )
T13157 47-52 NN denotes cells
T13158 53-57 VB denotes were
T13159 58-69 VB denotes transfected
T13160 70-74 IN denotes with
T13161 75-78 DT denotes the
T13162 79-89 NN denotes expression
T13163 90-97 NN denotes plasmid
T13164 98-111 NN denotes pFLAG-SHARPIN
T13165 113-118 IN denotes After
T13166 119-121 CD denotes 48
T13167 122-127 NN denotes hours
T13168 127-128 -COMMA- denotes ,
T13169 129-134 NN denotes cells
T13170 135-139 VB denotes were
T13171 140-145 VB denotes fixed
T13172 146-149 CC denotes and
T13173 150-156 VB denotes probed
T13174 157-161 IN denotes with
T13175 162-171 JJ denotes anti-FLAG
T13176 172-175 CC denotes and
T13177 176-191 JJ denotes FITC-conjugated
T13178 192-201 JJ denotes secondary
T13179 202-210 NN denotes antibody
T13180 212-218 NN denotes Nuclei
T13181 219-223 VB denotes were
T13182 224-231 VB denotes stained
T13183 232-236 IN denotes with
R10939 T13148 T13149 arg1Of Fibroblast,(
R10940 T13148 T13152 arg1Of Fibroblast,and
R10941 T13150 T13149 arg2Of NIH3T3,(
R10942 T13151 T13149 arg3Of ),(
R10943 T13152 T13154 arg1Of and,(
R10944 T13153 T13152 arg2Of macrophages,and
R10945 T13155 T13154 arg2Of RAW264.7,(
R10946 T13156 T13154 arg3Of ),(
R10947 T13157 T13148 arg1Of cells,Fibroblast
R10948 T13157 T13153 arg1Of cells,macrophages
R10949 T13157 T13158 arg1Of cells,were
R10950 T13157 T13159 arg2Of cells,transfected
R10952 T13159 T13158 arg2Of transfected,were
R10953 T13159 T13160 arg1Of transfected,with
R10954 T13164 T13160 arg2Of pFLAG-SHARPIN,with
R10955 T13164 T13161 arg1Of pFLAG-SHARPIN,the
R10956 T13164 T13162 arg1Of pFLAG-SHARPIN,expression
R10957 T13164 T13163 arg1Of pFLAG-SHARPIN,plasmid
R10958 T13167 T13165 arg2Of hours,After
R10959 T13167 T13166 arg1Of hours,48
R10960 T13169 T13170 arg1Of cells,were
R10961 T13169 T13171 arg2Of cells,fixed
R10962 T13169 T13173 arg2Of cells,probed
R10963 T13171 T13172 arg1Of fixed,and
R10964 T13172 T13165 arg1Of and,After
R10965 T13172 T13168 arg1Of and,","
R10966 T13172 T13170 arg2Of and,were
R10967 T13173 T13172 arg2Of probed,and
R10968 T13173 T13174 arg1Of probed,with
R10969 T13175 T13176 arg1Of anti-FLAG,and
R10970 T13177 T13176 arg2Of FITC-conjugated,and
R10971 T13179 T13174 arg2Of antibody,with
R10972 T13179 T13175 arg1Of antibody,anti-FLAG
R10973 T13179 T13177 arg1Of antibody,FITC-conjugated
R10974 T13179 T13178 arg1Of antibody,secondary
R10975 T13180 T13181 arg1Of Nuclei,were
R10976 T13180 T13182 arg2Of Nuclei,stained
R10977 T13182 T13181 arg2Of stained,were
R10978 T13182 T13183 arg1Of stained,with

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T12937 0-10 NNP denotes Fibroblast
T12938 11-12 -LRB- denotes (
T12939 12-18 NNP denotes NIH3T3
T12940 18-19 -RRB- denotes )
T12941 20-23 CC denotes and
T12942 24-35 NNS denotes macrophages
T12943 36-37 -LRB- denotes (
T12944 37-43 CD denotes RAW264
T12945 43-45 CD denotes .7
T12946 45-46 -RRB- denotes )
T12947 47-52 NNS denotes cells
T12948 53-57 VBD denotes were
T12949 58-69 VBN denotes transfected
T12950 70-74 IN denotes with
T12951 75-78 DT denotes the
T12952 79-89 NN denotes expression
T12953 90-97 VBD denotes plasmid
T12954 98-111 NNP denotes pFLAG-SHARPIN
T12955 111-112 . denotes .
T12956 113-118 IN denotes After
T12957 119-121 CD denotes 48
T12958 122-127 NNS denotes hours
T12959 127-128 , denotes ,
T12960 129-134 NNS denotes cells
T12961 135-139 VBD denotes were
T12962 140-145 VBN denotes fixed
T12963 146-149 CC denotes and
T12964 150-156 VBN denotes probed
T12965 157-161 IN denotes with
T12966 162-171 JJ denotes anti-FLAG
T12967 172-175 CC denotes and
T12968 176-191 JJ denotes FITC-conjugated
T12969 192-201 JJ denotes secondary
T12970 202-210 NN denotes antibody
T12971 210-211 . denotes .
T12972 212-218 NNP denotes Nuclei
T12973 219-223 VBD denotes were
T12974 224-231 VBN denotes stained
T12975 232-236 IN denotes with
R10724 T12937 T12947 nmod Fibroblast,cells
R10725 T12938 T12939 punct (,NIH3T3
R10726 T12939 T12937 appos NIH3T3,Fibroblast
R10727 T12940 T12939 punct ),NIH3T3
R10728 T12941 T12937 cc and,Fibroblast
R10729 T12942 T12937 conj macrophages,Fibroblast
R10730 T12943 T12942 punct (,macrophages
R10731 T12944 T12945 nummod RAW264,.7
R10732 T12945 T12942 appos .7,macrophages
R10733 T12946 T12942 punct ),macrophages
R10734 T12947 T12949 nsubjpass cells,transfected
R10735 T12948 T12949 auxpass were,transfected
R10736 T12949 T12949 ROOT transfected,transfected
R10737 T12950 T12949 prep with,transfected
R10738 T12951 T12952 det the,expression
R10739 T12952 T12950 pobj expression,with
R10740 T12953 T12949 conj plasmid,transfected
R10741 T12954 T12953 nsubj pFLAG-SHARPIN,plasmid
R10742 T12955 T12949 punct .,transfected
R10743 T12956 T12962 prep After,fixed
R10744 T12957 T12958 nummod 48,hours
R10745 T12958 T12956 pobj hours,After
R10746 T12959 T12962 punct ",",fixed
R10747 T12960 T12962 nsubjpass cells,fixed
R10748 T12961 T12962 auxpass were,fixed
R10749 T12962 T12962 ROOT fixed,fixed
R10750 T12963 T12962 cc and,fixed
R10751 T12964 T12962 conj probed,fixed
R10752 T12965 T12964 prep with,probed
R10753 T12966 T12970 amod anti-FLAG,antibody
R10754 T12967 T12966 cc and,anti-FLAG
R10755 T12968 T12966 conj FITC-conjugated,anti-FLAG
R10756 T12969 T12970 amod secondary,antibody
R10757 T12970 T12965 pobj antibody,with
R10758 T12971 T12962 punct .,fixed
R10759 T12972 T12974 nsubjpass Nuclei,stained
R10760 T12973 T12974 auxpass were,stained
R10761 T12974 T12974 ROOT stained,stained
R10762 T12975 T12974 prep with,stained

GO-MF

Id Subject Object Predicate Lexical cue
T13215 202-210 http://purl.obolibrary.org/obo/GO_0003823 denotes antibody

GO-CC

Id Subject Object Predicate Lexical cue
T13216 47-52 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T13217 129-134 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T13219 202-210 http://purl.obolibrary.org/obo/GO_0019815 denotes antibody
T13220 202-210 http://purl.obolibrary.org/obo/GO_0042571 denotes antibody

sentences

Id Subject Object Predicate Lexical cue
T12768 113-211 Sentence denotes After 48 hours, cells were fixed and probed with anti-FLAG and FITC-conjugated secondary antibody.
T46 113-211 Sentence denotes After 48 hours, cells were fixed and probed with anti-FLAG and FITC-conjugated secondary antibody.

events-check-again

Id Subject Object Predicate Lexical cue
T13242 104-111 Protein denotes SHARPIN

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T12759 104-111 Protein denotes SHARPIN

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T13201 104-111 Q9H0F6 denotes SHARPIN

test2

Id Subject Object Predicate Lexical cue
T12750 79-89 Gene_expression denotes expression
T12751 104-111 Protein denotes SHARPIN