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PMC:3279418 / 6138-6451 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T12999 0-1 -LRB- denotes (
T13000 1-2 NN denotes A
T13001 2-3 -RRB- denotes )
T13002 4-9 NN denotes COILS
T13003 10-13 CC denotes and
T13004 14-23 NNP denotes MotifScan
T13005 24-32 NN denotes programs
T13006 33-37 VB denotes were
T13007 38-42 VB denotes used
T13008 43-45 TO denotes to
T13009 46-53 VB denotes predict
T13010 54-57 DT denotes the
T13011 58-66 NN denotes presence
T13012 67-69 IN denotes of
T13013 70-72 NN denotes CC
T13014 73-74 -LRB- denotes (
T13015 74-85 NN denotes coiled-coil
T13016 85-86 -RRB- denotes )
T13017 87-93 NN denotes domain
T13018 93-94 -COMMA- denotes ,
T13019 95-98 NN denotes UBL
T13020 99-100 -LRB- denotes (
T13021 100-114 JJ denotes ubiquitin-like
T13022 114-115 -RRB- denotes )
T13023 116-122 NN denotes domain
T13024 123-126 CC denotes and
T13025 127-132 NN denotes ZFRBP
T13026 133-134 -LRB- denotes (
T13027 134-145 NN denotes zinc-finger
T13028 146-157 NN denotes Ran-Binding
T13029 158-165 NN denotes protein
T13030 166-167 CD denotes 2
T13031 167-168 -RRB- denotes )
T13032 169-175 NN denotes domain
T13033 176-181 WDT denotes which
T13034 182-186 VB denotes form
T13035 187-194 JJ denotes similar
T13036 195-200 NN denotes motif
T13037 201-209 NN denotes patterns
T13038 210-212 IN denotes in
T13039 213-216 DT denotes the
T13040 217-224 NN denotes SHARPIN
T13041 225-232 NN denotes protein
T13042 233-235 IN denotes of
T13043 236-241 JJ denotes human
T13044 241-242 -COMMA- denotes ,
T13045 243-248 NN denotes mouse
T13046 249-252 CC denotes and
T13047 253-256 NN denotes rat
T13048 257-265 NN denotes origins.
T13049 266-267 -LRB- denotes (
T13050 267-268 NN denotes B
T13051 268-269 -RRB- denotes )
T13052 270-275 CD denotes Eight
T13053 276-284 JJ denotes week-old
T13054 285-292 NN denotes females
T13055 293-295 IN denotes of
T13056 296-298 NN denotes WT
T13057 299-302 CC denotes and
T13058 303-307 NN denotes cpdm
T13059 308-312 NN denotes mice
R10786 T13000 T12999 arg2Of A,(
R10787 T13001 T12999 arg3Of ),(
R10788 T13002 T13003 arg1Of COILS,and
R10789 T13004 T13003 arg2Of MotifScan,and
R10790 T13005 T12999 arg1Of programs,(
R10791 T13005 T13002 arg1Of programs,COILS
R10792 T13005 T13004 arg1Of programs,MotifScan
R10793 T13005 T13006 arg1Of programs,were
R10794 T13005 T13007 arg2Of programs,used
R10795 T13007 T13006 arg2Of used,were
R10796 T13009 T13007 arg3Of predict,used
R10797 T13009 T13008 arg1Of predict,to
R10798 T13011 T13009 arg2Of presence,predict
R10799 T13011 T13010 arg1Of presence,the
R10800 T13011 T13012 arg1Of presence,of
R10801 T13015 T13014 arg2Of coiled-coil,(
R10802 T13016 T13014 arg3Of ),(
R10803 T13017 T13013 arg1Of domain,CC
R10804 T13017 T13014 arg1Of domain,(
R10805 T13017 T13018 arg1Of domain,","
R10806 T13018 T13024 arg1Of ",",and
R10807 T13021 T13020 arg2Of ubiquitin-like,(
R10808 T13022 T13020 arg3Of ),(
R10809 T13023 T13018 arg2Of domain,","
R10810 T13023 T13019 arg1Of domain,UBL
R10811 T13023 T13020 arg1Of domain,(
R10812 T13024 T13012 arg2Of and,of
R10813 T13024 T13033 arg1Of and,which
R10814 T13024 T13034 arg1Of and,form
R10815 T13025 T13026 arg1Of ZFRBP,(
R10816 T13029 T13026 arg2Of protein,(
R10817 T13029 T13027 arg1Of protein,zinc-finger
R10818 T13029 T13028 arg1Of protein,Ran-Binding
R10819 T13029 T13030 arg1Of protein,2
R10820 T13031 T13026 arg3Of ),(
R10821 T13032 T13024 arg2Of domain,and
R10822 T13032 T13025 arg1Of domain,ZFRBP
R10823 T13037 T13034 arg2Of patterns,form
R10824 T13037 T13035 arg1Of patterns,similar
R10825 T13037 T13036 arg1Of patterns,motif
R10826 T13037 T13038 arg1Of patterns,in
R10827 T13037 T13042 arg1Of patterns,of
R10828 T13041 T13038 arg2Of protein,in
R10829 T13041 T13039 arg1Of protein,the
R10830 T13041 T13040 arg1Of protein,SHARPIN
R10831 T13043 T13044 arg1Of human,","
R10832 T13045 T13046 arg1Of mouse,and
R10833 T13046 T13044 arg2Of and,","
R10834 T13048 T13046 arg2Of origins.,and
R10835 T13048 T13047 arg1Of origins.,rat
R10836 T13048 T13049 arg1Of origins.,(
R10837 T13050 T13049 arg2Of B,(
R10838 T13051 T13049 arg3Of ),(
R10839 T13054 T13042 arg2Of females,of
R10840 T13054 T13043 arg1Of females,human
R10841 T13054 T13045 arg1Of females,mouse
R10842 T13054 T13048 arg1Of females,origins.
R10843 T13054 T13052 arg1Of females,Eight
R10844 T13054 T13053 arg1Of females,week-old
R10845 T13054 T13055 arg1Of females,of
R10846 T13056 T13057 arg1Of WT,and
R10847 T13058 T13057 arg2Of cpdm,and
R10848 T13059 T13055 arg2Of mice,of
R10849 T13059 T13056 arg1Of mice,WT
R10850 T13059 T13058 arg1Of mice,cpdm

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T12780 0-1 -LRB- denotes (
T12781 1-2 NNP denotes A
T12782 2-3 -RRB- denotes )
T12783 4-9 NNP denotes COILS
T12784 10-13 CC denotes and
T12785 14-23 NNP denotes MotifScan
T12786 24-32 NNS denotes programs
T12787 33-37 VBD denotes were
T12788 38-42 VBN denotes used
T12789 43-45 TO denotes to
T12790 46-53 VB denotes predict
T12791 54-57 DT denotes the
T12792 58-66 NN denotes presence
T12793 67-69 IN denotes of
T12794 70-72 NNP denotes CC
T12795 73-74 -LRB- denotes (
T12796 74-85 NN denotes coiled-coil
T12797 85-86 -RRB- denotes )
T12798 87-93 NN denotes domain
T12799 93-94 , denotes ,
T12800 95-98 NNP denotes UBL
T12801 99-100 -LRB- denotes (
T12802 100-114 JJ denotes ubiquitin-like
T12803 114-115 -RRB- denotes )
T12804 116-122 NN denotes domain
T12805 123-126 CC denotes and
T12806 127-132 NNP denotes ZFRBP
T12807 133-134 -LRB- denotes (
T12808 134-145 NN denotes zinc-finger
T12809 146-157 NNP denotes Ran-Binding
T12810 158-165 NN denotes protein
T12811 166-167 CD denotes 2
T12812 167-168 -RRB- denotes )
T12813 169-175 NN denotes domain
T12814 176-181 WDT denotes which
T12815 182-186 VBP denotes form
T12816 187-194 JJ denotes similar
T12817 195-200 NN denotes motif
T12818 201-209 NNS denotes patterns
T12819 210-212 IN denotes in
T12820 213-216 DT denotes the
T12821 217-224 NNP denotes SHARPIN
T12822 225-232 NN denotes protein
T12823 233-235 IN denotes of
T12824 236-241 JJ denotes human
T12825 241-242 , denotes ,
T12826 243-248 NN denotes mouse
T12827 249-252 CC denotes and
T12828 253-256 NN denotes rat
T12829 257-264 NNS denotes origins
T12830 264-265 . denotes .
T12831 266-267 -LRB- denotes (
T12832 267-268 NNP denotes B
T12833 268-269 -RRB- denotes )
T12834 270-275 CD denotes Eight
T12835 276-284 JJ denotes week-old
T12836 285-292 NNS denotes females
T12837 293-295 IN denotes of
T12838 296-298 NNP denotes WT
T12839 299-302 CC denotes and
T12840 303-307 NN denotes cpdm
T12841 308-312 NNS denotes mice
T12842 312-313 . denotes .
R10567 T12780 T12788 punct (,used
R10568 T12781 T12786 nmod A,programs
R10569 T12782 T12781 punct ),A
R10570 T12783 T12786 nmod COILS,programs
R10571 T12784 T12783 cc and,COILS
R10572 T12785 T12783 conj MotifScan,COILS
R10573 T12786 T12788 nsubjpass programs,used
R10574 T12787 T12788 auxpass were,used
R10575 T12788 T12788 ROOT used,used
R10576 T12789 T12790 aux to,predict
R10577 T12790 T12788 xcomp predict,used
R10578 T12791 T12792 det the,presence
R10579 T12792 T12790 dobj presence,predict
R10580 T12793 T12792 prep of,presence
R10581 T12794 T12793 pobj CC,of
R10582 T12795 T12794 punct (,CC
R10583 T12796 T12798 nmod coiled-coil,domain
R10584 T12797 T12798 punct ),domain
R10585 T12798 T12794 appos domain,CC
R10586 T12799 T12794 punct ",",CC
R10587 T12800 T12794 conj UBL,CC
R10588 T12801 T12802 punct (,ubiquitin-like
R10589 T12802 T12800 appos ubiquitin-like,UBL
R10590 T12803 T12802 punct ),ubiquitin-like
R10591 T12804 T12793 pobj domain,of
R10592 T12805 T12804 cc and,domain
R10593 T12806 T12813 compound ZFRBP,domain
R10594 T12807 T12810 punct (,protein
R10595 T12808 T12809 compound zinc-finger,Ran-Binding
R10596 T12809 T12810 compound Ran-Binding,protein
R10597 T12810 T12806 appos protein,ZFRBP
R10598 T12811 T12810 nummod 2,protein
R10599 T12812 T12810 punct ),protein
R10600 T12813 T12792 appos domain,presence
R10601 T12814 T12815 nsubj which,form
R10602 T12815 T12813 relcl form,domain
R10603 T12816 T12818 amod similar,patterns
R10604 T12817 T12818 compound motif,patterns
R10605 T12818 T12815 dobj patterns,form
R10606 T12819 T12818 prep in,patterns
R10607 T12820 T12822 det the,protein
R10608 T12821 T12822 compound SHARPIN,protein
R10609 T12822 T12819 pobj protein,in
R10610 T12823 T12822 prep of,protein
R10611 T12824 T12826 amod human,mouse
R10612 T12825 T12824 punct ",",human
R10613 T12826 T12823 pobj mouse,of
R10614 T12827 T12826 cc and,mouse
R10615 T12828 T12829 compound rat,origins
R10616 T12829 T12826 conj origins,mouse
R10617 T12830 T12788 punct .,used
R10618 T12831 T12832 punct (,B
R10619 T12832 T12832 ROOT B,B
R10620 T12833 T12832 punct ),B
R10621 T12834 T12836 nummod Eight,females
R10622 T12835 T12836 amod week-old,females
R10623 T12836 T12836 ROOT females,females
R10624 T12837 T12836 prep of,females
R10625 T12838 T12841 nmod WT,mice
R10626 T12839 T12838 cc and,WT
R10627 T12840 T12841 compound cpdm,mice
R10628 T12841 T12837 pobj mice,of
R10629 T12842 T12836 punct .,females

GO-MF

Id Subject Object Predicate Lexical cue
T13214 100-109 http://purl.obolibrary.org/obo/GO_0031386 denotes ubiquitin

sentences

Id Subject Object Predicate Lexical cue
T12764 0-313 Sentence denotes (A) COILS and MotifScan programs were used to predict the presence of CC (coiled-coil) domain, UBL (ubiquitin-like) domain and ZFRBP (zinc-finger Ran-Binding protein 2) domain which form similar motif patterns in the SHARPIN protein of human, mouse and rat origins. (B) Eight week-old females of WT and cpdm mice.
T42 0-313 Sentence denotes (A) COILS and MotifScan programs were used to predict the presence of CC (coiled-coil) domain, UBL (ubiquitin-like) domain and ZFRBP (zinc-finger Ran-Binding protein 2) domain which form similar motif patterns in the SHARPIN protein of human, mouse and rat origins. (B) Eight week-old females of WT and cpdm mice.

events-check-again

Id Subject Object Predicate Lexical cue
T13239 217-224 Protein denotes SHARPIN

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T13247 95-98 Protein denotes UBL
T13248 100-109 Protein denotes ubiquitin
T13249 127-132 Protein denotes ZFRBP
T13250 134-167 Protein denotes zinc-finger Ran-Binding protein 2
T13251 217-232 Protein denotes SHARPIN protein

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T12756 217-224 Protein denotes SHARPIN

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T13198 217-224 Q9H0F6 denotes SHARPIN

test2

Id Subject Object Predicate Lexical cue
T12746 217-224 Protein denotes SHARPIN