> top > docs > PMC:3279418 > spans > 30627-30970 > annotations

PMC:3279418 / 30627-30970 JSONTXT

Annnotations TAB JSON ListView MergeView

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T11679 0-7 NNP denotes Reverse
T11680 8-21 NN denotes transcription
T11681 22-25 VB denotes was
T11682 26-35 VB denotes performed
T11683 36-38 IN denotes at
T11684 39-43 NN denotes 42°C
T11685 44-47 IN denotes for
T11686 48-50 CD denotes 60
T11687 51-58 NN denotes minutes
T11688 59-63 IN denotes with
T11689 64-67 DT denotes the
T11690 68-73 JJ denotes final
T11691 74-86 NN denotes denaturation
T11692 87-91 NN denotes step
T11693 92-94 IN denotes at
T11694 95-99 NN denotes 90°C
T11695 100-103 IN denotes for
T11696 104-105 CD denotes 5
T11697 106-113 NN denotes minutes
T11698 114-116 IN denotes in
T11699 117-119 CD denotes 30
T11700 120-122 NN denotes µl
T11701 123-133 VB denotes containing
T11702 134-137 CD denotes 0.5
T11703 138-140 NN denotes µg
T11704 141-143 IN denotes of
T11705 144-149 JJ denotes total
T11706 150-154 NN denotes RNA.
T11707 155-160 NN denotes dNTPs
T11708 160-161 -COMMA- denotes ,
T11709 162-167 NN denotes oligo
T11710 167-168 -LRB- denotes (
T11711 168-170 NN denotes dT
T11712 170-171 -RRB- denotes )
T11713 171-173 CD denotes 15
T11714 174-180 NN denotes primer
T11715 180-181 -COMMA- denotes ,
T11716 182-193 JJ denotes recombinant
T11717 194-200 NNP denotes RNasin
T11718 201-213 NNP denotes Ribonuclease
T11719 214-223 NNP denotes Inhibitor
T11720 223-224 -COMMA- denotes ,
T11721 225-228 CC denotes and
T11722 229-234 NN denotes M-MLV
T11723 235-242 JJ denotes Reverse
T11724 243-256 NN denotes Transcriptase
T11725 257-258 -LRB- denotes (
T11726 258-261 DT denotes all
T11727 262-266 IN denotes from
T11728 267-274 NNP denotes Promega
T11729 274-275 -COMMA- denotes ,
T11730 276-283 NNP denotes Madison
T11731 283-284 -COMMA- denotes ,
T11732 285-287 NNP denotes WI
T11733 287-288 -RRB- denotes )
T11734 289-293 VB denotes were
T11735 294-298 VB denotes used
T11736 299-308 VB denotes according
T11737 309-311 TO denotes to
T11738 312-315 DT denotes the
T11739 316-328 NN denotes manufacturer
T11740 328-330 POS denotes 's
T11741 331-342 NN denotes instruction
R9719 T11679 T11701 arg1Of Reverse,containing
R9720 T11680 T11681 arg1Of transcription,was
R9721 T11680 T11682 arg2Of transcription,performed
R9722 T11682 T11681 arg2Of performed,was
R9723 T11682 T11683 arg1Of performed,at
R9724 T11682 T11685 arg1Of performed,for
R9725 T11682 T11688 arg1Of performed,with
R9726 T11684 T11683 arg2Of 42°C,at
R9727 T11687 T11685 arg2Of minutes,for
R9728 T11687 T11686 arg1Of minutes,60
R9729 T11692 T11688 arg2Of step,with
R9730 T11692 T11689 arg1Of step,the
R9731 T11692 T11690 arg1Of step,final
R9732 T11692 T11691 arg1Of step,denaturation
R9733 T11692 T11693 arg1Of step,at
R9734 T11692 T11695 arg1Of step,for
R9735 T11692 T11698 arg1Of step,in
R9736 T11694 T11693 arg2Of 90°C,at
R9737 T11697 T11695 arg2Of minutes,for
R9738 T11697 T11696 arg1Of minutes,5
R9739 T11700 T11698 arg2Of µl,in
R9740 T11700 T11699 arg1Of µl,30
R9741 T11701 T11681 modOf containing,was
R9742 T11703 T11701 arg2Of µg,containing
R9743 T11703 T11702 arg1Of µg,0.5
R9744 T11703 T11704 arg1Of µg,of
R9745 T11707 T11704 arg2Of dNTPs,of
R9746 T11707 T11705 arg1Of dNTPs,total
R9747 T11707 T11706 arg1Of dNTPs,RNA.
R9748 T11707 T11708 arg1Of dNTPs,","
R9749 T11709 T11708 arg2Of oligo,","
R9750 T11709 T11710 arg1Of oligo,(
R9751 T11711 T11710 arg2Of dT,(
R9752 T11712 T11710 arg3Of ),(
R9754 T11714 T11679 arg1Of primer,Reverse
R9755 T11714 T11713 arg1Of primer,15
R9756 T11714 T11715 arg1Of primer,","
R9757 T11719 T11715 arg2Of Inhibitor,","
R9758 T11719 T11716 arg1Of Inhibitor,recombinant
R9759 T11719 T11717 arg1Of Inhibitor,RNasin
R9760 T11719 T11718 arg1Of Inhibitor,Ribonuclease
R9761 T11721 T11720 arg1Of and,","
R9762 T11724 T11722 arg1Of Transcriptase,M-MLV
R9763 T11724 T11723 arg1Of Transcriptase,Reverse
R9764 T11724 T11725 arg1Of Transcriptase,(
R9765 T11724 T11734 arg1Of Transcriptase,were
R9766 T11724 T11735 arg2Of Transcriptase,used
R9767 T11726 T11725 arg2Of all,(
R9768 T11726 T11727 arg1Of all,from
R9769 T11726 T11729 arg1Of all,","
R9770 T11728 T11727 arg2Of Promega,from
R9771 T11730 T11729 arg2Of Madison,","
R9772 T11730 T11731 arg1Of Madison,","
R9773 T11732 T11731 arg2Of WI,","
R9774 T11733 T11725 arg3Of ),(
R9775 T11735 T11721 arg2Of used,and
R9776 T11735 T11734 arg2Of used,were
R9777 T11735 T11736 arg1Of used,according
R9778 T11737 T11736 arg2Of to,according
R9779 T11739 T11738 arg1Of manufacturer,the
R9780 T11739 T11740 arg2Of manufacturer,'s
R9781 T11741 T11737 arg2Of instruction,to
R9782 T11741 T11740 arg1Of instruction,'s

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T11441 0-7 VB denotes Reverse
T11442 8-21 NN denotes transcription
T11443 22-25 VBD denotes was
T11444 26-35 VBN denotes performed
T11445 36-38 IN denotes at
T11446 39-41 CD denotes 42
T11447 41-42 CD denotes °
T11448 42-43 NNP denotes C
T11449 44-47 IN denotes for
T11450 48-50 CD denotes 60
T11451 51-58 NNS denotes minutes
T11452 59-63 IN denotes with
T11453 64-67 DT denotes the
T11454 68-73 JJ denotes final
T11455 74-86 NN denotes denaturation
T11456 87-91 NN denotes step
T11457 92-94 IN denotes at
T11458 95-97 CD denotes 90
T11459 97-98 CD denotes °
T11460 98-99 NNP denotes C
T11461 100-103 IN denotes for
T11462 104-105 CD denotes 5
T11463 106-113 NNS denotes minutes
T11464 114-116 IN denotes in
T11465 117-119 CD denotes 30
T11466 120-122 NN denotes µl
T11467 123-133 VBG denotes containing
T11468 134-137 CD denotes 0.5
T11469 138-140 NN denotes µg
T11470 141-143 IN denotes of
T11471 144-149 JJ denotes total
T11472 150-153 NNP denotes RNA
T11473 153-154 . denotes .
T11474 155-160 NNS denotes dNTPs
T11475 160-161 , denotes ,
T11476 162-167 NN denotes oligo
T11477 167-168 -LRB- denotes (
T11478 168-170 NN denotes dT
T11479 170-171 -RRB- denotes )
T11480 171-173 CD denotes 15
T11481 174-180 NN denotes primer
T11482 180-181 , denotes ,
T11483 182-193 JJ denotes recombinant
T11484 194-200 NNP denotes RNasin
T11485 201-213 NNP denotes Ribonuclease
T11486 214-223 NNP denotes Inhibitor
T11487 223-224 , denotes ,
T11488 225-228 CC denotes and
T11489 229-234 NNP denotes M-MLV
T11490 235-242 VB denotes Reverse
T11491 243-256 NNP denotes Transcriptase
T11492 257-258 -LRB- denotes (
T11493 258-261 DT denotes all
T11494 262-266 IN denotes from
T11495 267-274 NNP denotes Promega
T11496 274-275 , denotes ,
T11497 276-283 NNP denotes Madison
T11498 283-284 , denotes ,
T11499 285-287 NNP denotes WI
T11500 287-288 -RRB- denotes )
T11501 289-293 VBD denotes were
T11502 294-298 VBN denotes used
T11503 299-308 VBG denotes according
T11504 309-311 TO denotes to
T11505 312-315 DT denotes the
T11506 316-328 NN denotes manufacturer
T11507 328-330 POS denotes 's
T11508 331-342 NN denotes instruction
T11509 342-343 . denotes .
R9479 T11441 T11442 amod Reverse,transcription
R9480 T11442 T11444 nsubjpass transcription,performed
R9481 T11443 T11444 auxpass was,performed
R9482 T11444 T11444 ROOT performed,performed
R9483 T11445 T11444 prep at,performed
R9484 T11446 T11447 nummod 42,°
R9485 T11447 T11445 pobj °,at
R9486 T11448 T11444 npadvmod C,performed
R9487 T11449 T11444 prep for,performed
R9488 T11450 T11451 nummod 60,minutes
R9489 T11451 T11449 pobj minutes,for
R9490 T11452 T11451 prep with,minutes
R9491 T11453 T11456 det the,step
R9492 T11454 T11456 amod final,step
R9493 T11455 T11456 compound denaturation,step
R9494 T11456 T11452 pobj step,with
R9495 T11457 T11456 prep at,step
R9496 T11458 T11459 nummod 90,°
R9497 T11459 T11457 pobj °,at
R9498 T11460 T11461 compound C,for
R9499 T11461 T11444 prep for,performed
R9500 T11462 T11463 nummod 5,minutes
R9501 T11463 T11461 pobj minutes,for
R9502 T11464 T11463 prep in,minutes
R9503 T11465 T11466 nummod 30,µl
R9504 T11466 T11464 pobj µl,in
R9505 T11467 T11466 acl containing,µl
R9506 T11468 T11469 nummod 0.5,µg
R9507 T11469 T11467 dobj µg,containing
R9508 T11470 T11469 prep of,µg
R9509 T11471 T11472 amod total,RNA
R9510 T11472 T11470 pobj RNA,of
R9511 T11473 T11444 punct .,performed
R9512 T11474 T11502 nsubjpass dNTPs,used
R9513 T11475 T11474 punct ",",dNTPs
R9514 T11476 T11474 conj oligo,dNTPs
R9515 T11477 T11478 punct (,dT
R9516 T11478 T11481 nmod dT,primer
R9517 T11479 T11478 punct ),dT
R9518 T11480 T11481 nummod 15,primer
R9519 T11481 T11474 appos primer,dNTPs
R9520 T11482 T11481 punct ",",primer
R9521 T11483 T11486 amod recombinant,Inhibitor
R9522 T11484 T11486 compound RNasin,Inhibitor
R9523 T11485 T11486 compound Ribonuclease,Inhibitor
R9524 T11486 T11481 appos Inhibitor,primer
R9525 T11487 T11481 punct ",",primer
R9526 T11488 T11481 cc and,primer
R9527 T11489 T11490 nsubj M-MLV,Reverse
R9528 T11490 T11502 advmod Reverse,used
R9529 T11491 T11490 npadvmod Transcriptase,Reverse
R9530 T11492 T11493 punct (,all
R9531 T11493 T11494 advmod all,from
R9532 T11494 T11490 prep from,Reverse
R9533 T11495 T11494 pobj Promega,from
R9534 T11496 T11495 punct ",",Promega
R9535 T11497 T11495 conj Madison,Promega
R9536 T11498 T11497 punct ",",Madison
R9537 T11499 T11497 conj WI,Madison
R9538 T11500 T11490 punct ),Reverse
R9539 T11501 T11502 auxpass were,used
R9540 T11502 T11502 ROOT used,used
R9541 T11503 T11502 prep according,used
R9542 T11504 T11503 prep to,according
R9543 T11505 T11506 det the,manufacturer
R9544 T11506 T11508 poss manufacturer,instruction
R9545 T11507 T11506 case 's,manufacturer
R9546 T11508 T11504 pobj instruction,to
R9547 T11509 T11502 punct .,used

GO-BP

Id Subject Object Predicate Lexical cue
T11843 0-21 http://purl.obolibrary.org/obo/GO_0001171 denotes Reverse transcription
T11845 8-21 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T11847 243-256 http://purl.obolibrary.org/obo/GO_0003899 denotes Transcriptase
T11848 243-256 http://purl.obolibrary.org/obo/GO_0003968 denotes Transcriptase
T11849 243-256 http://purl.obolibrary.org/obo/GO_0034062 denotes Transcriptase

GO-MF

Id Subject Object Predicate Lexical cue
T11853 243-256 http://purl.obolibrary.org/obo/GO_0003899 denotes Transcriptase
T11854 243-256 http://purl.obolibrary.org/obo/GO_0003968 denotes Transcriptase
T11855 243-256 http://purl.obolibrary.org/obo/GO_0034062 denotes Transcriptase

sentences

Id Subject Object Predicate Lexical cue
T216 0-343 Sentence denotes Reverse transcription was performed at 42°C for 60 minutes with the final denaturation step at 90°C for 5 minutes in 30 µl containing 0.5 µg of total RNA. dNTPs, oligo(dT)15 primer, recombinant RNasin Ribonuclease Inhibitor, and M-MLV Reverse Transcriptase (all from Promega, Madison, WI) were used according to the manufacturer's instruction.

events-check-again

Id Subject Object Predicate Lexical cue
T11898 229-256 Protein denotes M-MLV Reverse Transcriptase

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T11913 194-213 Protein denotes RNasin Ribonuclease
T11914 229-256 Protein denotes M-MLV Reverse Transcriptase

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T11343 229-256 Protein denotes M-MLV Reverse Transcriptase

test2

Id Subject Object Predicate Lexical cue
T11327 229-256 Protein denotes M-MLV Reverse Transcriptase