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PMC:3279418 / 20701-20997 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22348129-21455173-89575694 141-142 21455173 denotes 7
22348129-21455181-89575695 146-147 21455181 denotes 8
T48730 141-142 21455173 denotes 7
T86456 146-147 21455181 denotes 8

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T8146 0-11 NN denotes Fibroblasts
T8147 12-14 IN denotes of
T8148 15-19 NN denotes cpdm
T8149 20-24 NN denotes mice
T8150 25-28 VB denotes are
T8151 29-35 RB denotes highly
T8152 36-45 JJ denotes sensitive
T8153 46-48 TO denotes to
T8154 49-61 JJ denotes TNFα-induced
T8155 62-66 NN denotes cell
T8156 67-72 NN denotes death
T8157 73-76 CC denotes and
T8158 77-80 DT denotes the
T8159 81-85 NN denotes cpdm
T8160 86-95 NN denotes phenotype
T8161 96-99 MD denotes can
T8162 100-102 VB denotes be
T8163 103-112 RB denotes partially
T8164 113-120 VB denotes rescued
T8165 121-123 IN denotes by
T8166 124-132 NN denotes deletion
T8167 133-135 IN denotes of
T8168 136-139 NN denotes TNF
T8169 140-141 -LRB- denotes [
T8170 141-142 CD denotes 7
T8171 142-143 -RRB- denotes ]
T8172 143-144 -COMMA- denotes ,
T8173 145-146 -LRB- denotes [
T8174 146-147 CD denotes 8
T8175 147-148 -RRB- denotes ]
T8176 148-149 -COMMA- denotes ,
T8177 150-160 VB denotes suggesting
T8178 161-165 IN denotes that
T8179 166-176 NN denotes deficiency
T8180 177-179 IN denotes of
T8181 180-187 NN denotes SHARPIN
T8182 188-199 VB denotes compromises
T8183 200-203 DT denotes the
T8184 204-218 JJ denotes anti-apoptotic
T8185 219-229 NN denotes mechanisms
T8186 230-232 IN denotes in
T8187 233-237 NN denotes cpdm
T8188 238-242 NN denotes mice
T8189 243-252 VB denotes resulting
T8190 253-255 IN denotes in
T8191 256-260 NN denotes cell
T8192 261-274 JJ denotes death-induced
T8193 275-287 JJ denotes inflammatory
T8194 288-295 NN denotes disease
R6761 T8146 T8147 arg1Of Fibroblasts,of
R6762 T8146 T8150 arg1Of Fibroblasts,are
R6763 T8146 T8152 arg1Of Fibroblasts,sensitive
R6764 T8149 T8147 arg2Of mice,of
R6765 T8149 T8148 arg1Of mice,cpdm
R6766 T8150 T8157 arg1Of are,and
R6767 T8152 T8150 arg2Of sensitive,are
R6768 T8152 T8151 arg1Of sensitive,highly
R6769 T8152 T8153 arg1Of sensitive,to
R6770 T8156 T8153 arg2Of death,to
R6771 T8156 T8154 arg1Of death,TNFα-induced
R6772 T8156 T8155 arg1Of death,cell
R6773 T8160 T8158 arg1Of phenotype,the
R6774 T8160 T8159 arg1Of phenotype,cpdm
R6775 T8160 T8161 arg1Of phenotype,can
R6776 T8160 T8162 arg1Of phenotype,be
R6777 T8160 T8164 arg2Of phenotype,rescued
R6778 T8164 T8157 arg2Of rescued,and
R6779 T8164 T8161 arg2Of rescued,can
R6780 T8164 T8162 arg2Of rescued,be
R6781 T8164 T8163 arg1Of rescued,partially
R6782 T8164 T8172 arg1Of rescued,","
R6783 T8164 T8173 arg1Of rescued,[
R6784 T8164 T8176 arg1Of rescued,","
R6785 T8164 T8177 modOf rescued,suggesting
R6786 T8166 T8164 arg1Of deletion,rescued
R6787 T8166 T8165 arg2Of deletion,by
R6788 T8166 T8167 arg1Of deletion,of
R6789 T8168 T8167 arg2Of TNF,of
R6790 T8168 T8169 arg1Of TNF,[
R6791 T8170 T8169 arg2Of 7,[
R6792 T8171 T8169 arg3Of ],[
R6793 T8174 T8173 arg2Of 8,[
R6794 T8175 T8173 arg3Of ],[
R6795 T8179 T8180 arg1Of deficiency,of
R6796 T8179 T8182 arg1Of deficiency,compromises
R6797 T8181 T8180 arg2Of SHARPIN,of
R6798 T8182 T8177 arg2Of compromises,suggesting
R6799 T8182 T8178 arg1Of compromises,that
R6800 T8182 T8186 arg1Of compromises,in
R6801 T8185 T8182 arg2Of mechanisms,compromises
R6802 T8185 T8183 arg1Of mechanisms,the
R6803 T8185 T8184 arg1Of mechanisms,anti-apoptotic
R6804 T8188 T8186 arg2Of mice,in
R6805 T8188 T8187 arg1Of mice,cpdm
R6806 T8188 T8189 arg1Of mice,resulting
R6807 T8189 T8190 arg1Of resulting,in
R6808 T8194 T8190 arg2Of disease,in
R6809 T8194 T8191 arg1Of disease,cell
R6810 T8194 T8192 arg1Of disease,death-induced
R6811 T8194 T8193 arg1Of disease,inflammatory

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T7018 0-11 NNS denotes Fibroblasts
T7019 12-14 IN denotes of
T7020 15-19 NN denotes cpdm
T7021 20-24 NNS denotes mice
T7022 25-28 VBP denotes are
T7023 29-35 RB denotes highly
T7024 36-45 JJ denotes sensitive
T7025 46-48 TO denotes to
T7026 49-61 JJ denotes TNFα-induced
T7027 62-66 NN denotes cell
T7028 67-72 NN denotes death
T7029 73-76 CC denotes and
T7030 77-80 DT denotes the
T7031 81-85 NN denotes cpdm
T7032 86-95 NN denotes phenotype
T7033 96-99 MD denotes can
T7034 100-102 VB denotes be
T7035 103-112 RB denotes partially
T7036 113-120 VBN denotes rescued
T7037 121-123 IN denotes by
T7038 124-132 NN denotes deletion
T7039 133-135 IN denotes of
T7040 136-139 NNP denotes TNF
T7041 140-141 NNP denotes [
T7042 141-142 CD denotes 7
T7043 142-143 NNP denotes ]
T7044 143-144 , denotes ,
T7045 145-146 NNP denotes [
T7046 146-147 CD denotes 8
T7047 147-148 NNP denotes ]
T7048 148-149 , denotes ,
T7049 150-160 VBG denotes suggesting
T7050 161-165 IN denotes that
T7051 166-176 NN denotes deficiency
T7052 177-179 IN denotes of
T7053 180-187 NNP denotes SHARPIN
T7054 188-199 VBZ denotes compromises
T7055 200-203 DT denotes the
T7056 204-218 JJ denotes anti-apoptotic
T7057 219-229 NNS denotes mechanisms
T7058 230-232 IN denotes in
T7059 233-237 NN denotes cpdm
T7060 238-242 NNS denotes mice
T7061 243-252 VBG denotes resulting
T7062 253-255 IN denotes in
T7063 256-260 NN denotes cell
T7064 261-274 JJ denotes death-induced
T7065 275-287 JJ denotes inflammatory
T7066 288-295 NN denotes disease
T7067 295-296 . denotes .
R5624 T7018 T7022 nsubj Fibroblasts,are
R5625 T7019 T7018 prep of,Fibroblasts
R5626 T7020 T7021 amod cpdm,mice
R5627 T7021 T7019 pobj mice,of
R5628 T7022 T7022 ROOT are,are
R5629 T7023 T7024 advmod highly,sensitive
R5630 T7024 T7022 acomp sensitive,are
R5631 T7025 T7024 prep to,sensitive
R5632 T7026 T7028 amod TNFα-induced,death
R5633 T7027 T7028 compound cell,death
R5634 T7028 T7025 pobj death,to
R5635 T7029 T7028 cc and,death
R5636 T7030 T7032 det the,phenotype
R5637 T7031 T7032 compound cpdm,phenotype
R5638 T7032 T7028 conj phenotype,death
R5639 T7033 T7036 aux can,rescued
R5640 T7034 T7036 auxpass be,rescued
R5641 T7035 T7036 advmod partially,rescued
R5642 T7036 T7022 conj rescued,are
R5643 T7037 T7036 agent by,rescued
R5644 T7038 T7037 pobj deletion,by
R5645 T7039 T7038 prep of,deletion
R5646 T7040 T7041 compound TNF,[
R5647 T7041 T7043 nmod [,]
R5648 T7042 T7043 nummod 7,]
R5649 T7043 T7039 pobj ],of
R5650 T7044 T7043 punct ",",]
R5651 T7045 T7047 nmod [,]
R5652 T7046 T7047 nummod 8,]
R5653 T7047 T7043 conj ],]
R5654 T7048 T7036 punct ",",rescued
R5655 T7049 T7036 advcl suggesting,rescued
R5656 T7050 T7054 mark that,compromises
R5657 T7051 T7054 nsubj deficiency,compromises
R5658 T7052 T7051 prep of,deficiency
R5659 T7053 T7052 pobj SHARPIN,of
R5660 T7054 T7049 ccomp compromises,suggesting
R5661 T7055 T7057 det the,mechanisms
R5662 T7056 T7057 amod anti-apoptotic,mechanisms
R5663 T7057 T7054 dobj mechanisms,compromises
R5664 T7058 T7054 prep in,compromises
R5665 T7059 T7060 compound cpdm,mice
R5666 T7060 T7058 pobj mice,in
R5667 T7061 T7060 acl resulting,mice
R5668 T7062 T7061 prep in,resulting
R5669 T7063 T7066 nmod cell,disease
R5670 T7064 T7066 amod death-induced,disease
R5671 T7065 T7066 amod inflammatory,disease
R5672 T7066 T7062 pobj disease,in
R5673 T7067 T7036 punct .,rescued

GO-BP

Id Subject Object Predicate Lexical cue
T9145 62-72 http://purl.obolibrary.org/obo/GO_0008219 denotes cell death
T9146 256-266 http://purl.obolibrary.org/obo/GO_0008219 denotes cell death
T9147 67-72 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T9148 261-266 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T9149 256-274 http://purl.obolibrary.org/obo/GO_0043276 denotes cell death-induced
T9150 256-274 http://purl.obolibrary.org/obo/GO_0071888 denotes cell death-induced

GO-CC

Id Subject Object Predicate Lexical cue
T9199 62-66 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T9200 256-260 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T6775 0-296 Sentence denotes Fibroblasts of cpdm mice are highly sensitive to TNFα-induced cell death and the cpdm phenotype can be partially rescued by deletion of TNF [7], [8], suggesting that deficiency of SHARPIN compromises the anti-apoptotic mechanisms in cpdm mice resulting in cell death-induced inflammatory disease.
T140 0-296 Sentence denotes Fibroblasts of cpdm mice are highly sensitive to TNFα-induced cell death and the cpdm phenotype can be partially rescued by deletion of TNF [7], [8], suggesting that deficiency of SHARPIN compromises the anti-apoptotic mechanisms in cpdm mice resulting in cell death-induced inflammatory disease.

events-check-again

Id Subject Object Predicate Lexical cue
T9377 49-53 Protein denotes TNFα
T9378 124-132 Negative_regulation denotes deletion
T9379 136-139 Protein denotes TNF
T9380 166-176 Negative_regulation denotes deficiency
T9381 180-187 Protein denotes SHARPIN
R7739 T9379 T9378 themeOf TNF,deletion
R7740 T9381 T9380 themeOf SHARPIN,deficiency

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T9459 49-53 Protein denotes TNFα
T9460 136-139 Protein denotes TNF
T9461 180-187 Protein denotes SHARPIN
T9462 166-176 Negative_regulation denotes deficiency
R7805 T9461 T9462 themeOf SHARPIN,deficiency

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T6689 49-53 Protein denotes TNFα
T6690 124-132 Negative_regulation denotes deletion
T6691 136-139 Protein denotes TNF
T6692 166-176 Negative_regulation denotes deficiency
T6693 180-187 Protein denotes SHARPIN
R5373 T6691 T6690 themeOf TNF,deletion
R5374 T6693 T6692 themeOf SHARPIN,deficiency

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T9046 136-139 P01375 denotes TNF
T9047 180-187 Q9H0F6 denotes SHARPIN