PMC:3279418 / 20701-20997
Annnotations
2_test
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
22348129-21455173-89575694 | 141-142 | 21455173 | denotes | 7 |
22348129-21455181-89575695 | 146-147 | 21455181 | denotes | 8 |
T48730 | 141-142 | 21455173 | denotes | 7 |
T86456 | 146-147 | 21455181 | denotes | 8 |
pmc-enju-pas
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T8146 | 0-11 | NN | denotes | Fibroblasts |
T8147 | 12-14 | IN | denotes | of |
T8148 | 15-19 | NN | denotes | cpdm |
T8149 | 20-24 | NN | denotes | mice |
T8150 | 25-28 | VB | denotes | are |
T8151 | 29-35 | RB | denotes | highly |
T8152 | 36-45 | JJ | denotes | sensitive |
T8153 | 46-48 | TO | denotes | to |
T8154 | 49-61 | JJ | denotes | TNFα-induced |
T8155 | 62-66 | NN | denotes | cell |
T8156 | 67-72 | NN | denotes | death |
T8157 | 73-76 | CC | denotes | and |
T8158 | 77-80 | DT | denotes | the |
T8159 | 81-85 | NN | denotes | cpdm |
T8160 | 86-95 | NN | denotes | phenotype |
T8161 | 96-99 | MD | denotes | can |
T8162 | 100-102 | VB | denotes | be |
T8163 | 103-112 | RB | denotes | partially |
T8164 | 113-120 | VB | denotes | rescued |
T8165 | 121-123 | IN | denotes | by |
T8166 | 124-132 | NN | denotes | deletion |
T8167 | 133-135 | IN | denotes | of |
T8168 | 136-139 | NN | denotes | TNF |
T8169 | 140-141 | -LRB- | denotes | [ |
T8170 | 141-142 | CD | denotes | 7 |
T8171 | 142-143 | -RRB- | denotes | ] |
T8172 | 143-144 | -COMMA- | denotes | , |
T8173 | 145-146 | -LRB- | denotes | [ |
T8174 | 146-147 | CD | denotes | 8 |
T8175 | 147-148 | -RRB- | denotes | ] |
T8176 | 148-149 | -COMMA- | denotes | , |
T8177 | 150-160 | VB | denotes | suggesting |
T8178 | 161-165 | IN | denotes | that |
T8179 | 166-176 | NN | denotes | deficiency |
T8180 | 177-179 | IN | denotes | of |
T8181 | 180-187 | NN | denotes | SHARPIN |
T8182 | 188-199 | VB | denotes | compromises |
T8183 | 200-203 | DT | denotes | the |
T8184 | 204-218 | JJ | denotes | anti-apoptotic |
T8185 | 219-229 | NN | denotes | mechanisms |
T8186 | 230-232 | IN | denotes | in |
T8187 | 233-237 | NN | denotes | cpdm |
T8188 | 238-242 | NN | denotes | mice |
T8189 | 243-252 | VB | denotes | resulting |
T8190 | 253-255 | IN | denotes | in |
T8191 | 256-260 | NN | denotes | cell |
T8192 | 261-274 | JJ | denotes | death-induced |
T8193 | 275-287 | JJ | denotes | inflammatory |
T8194 | 288-295 | NN | denotes | disease |
R6761 | T8146 | T8147 | arg1Of | Fibroblasts,of |
R6762 | T8146 | T8150 | arg1Of | Fibroblasts,are |
R6763 | T8146 | T8152 | arg1Of | Fibroblasts,sensitive |
R6764 | T8149 | T8147 | arg2Of | mice,of |
R6765 | T8149 | T8148 | arg1Of | mice,cpdm |
R6766 | T8150 | T8157 | arg1Of | are,and |
R6767 | T8152 | T8150 | arg2Of | sensitive,are |
R6768 | T8152 | T8151 | arg1Of | sensitive,highly |
R6769 | T8152 | T8153 | arg1Of | sensitive,to |
R6770 | T8156 | T8153 | arg2Of | death,to |
R6771 | T8156 | T8154 | arg1Of | death,TNFα-induced |
R6772 | T8156 | T8155 | arg1Of | death,cell |
R6773 | T8160 | T8158 | arg1Of | phenotype,the |
R6774 | T8160 | T8159 | arg1Of | phenotype,cpdm |
R6775 | T8160 | T8161 | arg1Of | phenotype,can |
R6776 | T8160 | T8162 | arg1Of | phenotype,be |
R6777 | T8160 | T8164 | arg2Of | phenotype,rescued |
R6778 | T8164 | T8157 | arg2Of | rescued,and |
R6779 | T8164 | T8161 | arg2Of | rescued,can |
R6780 | T8164 | T8162 | arg2Of | rescued,be |
R6781 | T8164 | T8163 | arg1Of | rescued,partially |
R6782 | T8164 | T8172 | arg1Of | rescued,"," |
R6783 | T8164 | T8173 | arg1Of | rescued,[ |
R6784 | T8164 | T8176 | arg1Of | rescued,"," |
R6785 | T8164 | T8177 | modOf | rescued,suggesting |
R6786 | T8166 | T8164 | arg1Of | deletion,rescued |
R6787 | T8166 | T8165 | arg2Of | deletion,by |
R6788 | T8166 | T8167 | arg1Of | deletion,of |
R6789 | T8168 | T8167 | arg2Of | TNF,of |
R6790 | T8168 | T8169 | arg1Of | TNF,[ |
R6791 | T8170 | T8169 | arg2Of | 7,[ |
R6792 | T8171 | T8169 | arg3Of | ],[ |
R6793 | T8174 | T8173 | arg2Of | 8,[ |
R6794 | T8175 | T8173 | arg3Of | ],[ |
R6795 | T8179 | T8180 | arg1Of | deficiency,of |
R6796 | T8179 | T8182 | arg1Of | deficiency,compromises |
R6797 | T8181 | T8180 | arg2Of | SHARPIN,of |
R6798 | T8182 | T8177 | arg2Of | compromises,suggesting |
R6799 | T8182 | T8178 | arg1Of | compromises,that |
R6800 | T8182 | T8186 | arg1Of | compromises,in |
R6801 | T8185 | T8182 | arg2Of | mechanisms,compromises |
R6802 | T8185 | T8183 | arg1Of | mechanisms,the |
R6803 | T8185 | T8184 | arg1Of | mechanisms,anti-apoptotic |
R6804 | T8188 | T8186 | arg2Of | mice,in |
R6805 | T8188 | T8187 | arg1Of | mice,cpdm |
R6806 | T8188 | T8189 | arg1Of | mice,resulting |
R6807 | T8189 | T8190 | arg1Of | resulting,in |
R6808 | T8194 | T8190 | arg2Of | disease,in |
R6809 | T8194 | T8191 | arg1Of | disease,cell |
R6810 | T8194 | T8192 | arg1Of | disease,death-induced |
R6811 | T8194 | T8193 | arg1Of | disease,inflammatory |
bionlp-st-ge-2016-spacy-parsed
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T7018 | 0-11 | NNS | denotes | Fibroblasts |
T7019 | 12-14 | IN | denotes | of |
T7020 | 15-19 | NN | denotes | cpdm |
T7021 | 20-24 | NNS | denotes | mice |
T7022 | 25-28 | VBP | denotes | are |
T7023 | 29-35 | RB | denotes | highly |
T7024 | 36-45 | JJ | denotes | sensitive |
T7025 | 46-48 | TO | denotes | to |
T7026 | 49-61 | JJ | denotes | TNFα-induced |
T7027 | 62-66 | NN | denotes | cell |
T7028 | 67-72 | NN | denotes | death |
T7029 | 73-76 | CC | denotes | and |
T7030 | 77-80 | DT | denotes | the |
T7031 | 81-85 | NN | denotes | cpdm |
T7032 | 86-95 | NN | denotes | phenotype |
T7033 | 96-99 | MD | denotes | can |
T7034 | 100-102 | VB | denotes | be |
T7035 | 103-112 | RB | denotes | partially |
T7036 | 113-120 | VBN | denotes | rescued |
T7037 | 121-123 | IN | denotes | by |
T7038 | 124-132 | NN | denotes | deletion |
T7039 | 133-135 | IN | denotes | of |
T7040 | 136-139 | NNP | denotes | TNF |
T7041 | 140-141 | NNP | denotes | [ |
T7042 | 141-142 | CD | denotes | 7 |
T7043 | 142-143 | NNP | denotes | ] |
T7044 | 143-144 | , | denotes | , |
T7045 | 145-146 | NNP | denotes | [ |
T7046 | 146-147 | CD | denotes | 8 |
T7047 | 147-148 | NNP | denotes | ] |
T7048 | 148-149 | , | denotes | , |
T7049 | 150-160 | VBG | denotes | suggesting |
T7050 | 161-165 | IN | denotes | that |
T7051 | 166-176 | NN | denotes | deficiency |
T7052 | 177-179 | IN | denotes | of |
T7053 | 180-187 | NNP | denotes | SHARPIN |
T7054 | 188-199 | VBZ | denotes | compromises |
T7055 | 200-203 | DT | denotes | the |
T7056 | 204-218 | JJ | denotes | anti-apoptotic |
T7057 | 219-229 | NNS | denotes | mechanisms |
T7058 | 230-232 | IN | denotes | in |
T7059 | 233-237 | NN | denotes | cpdm |
T7060 | 238-242 | NNS | denotes | mice |
T7061 | 243-252 | VBG | denotes | resulting |
T7062 | 253-255 | IN | denotes | in |
T7063 | 256-260 | NN | denotes | cell |
T7064 | 261-274 | JJ | denotes | death-induced |
T7065 | 275-287 | JJ | denotes | inflammatory |
T7066 | 288-295 | NN | denotes | disease |
T7067 | 295-296 | . | denotes | . |
R5624 | T7018 | T7022 | nsubj | Fibroblasts,are |
R5625 | T7019 | T7018 | prep | of,Fibroblasts |
R5626 | T7020 | T7021 | amod | cpdm,mice |
R5627 | T7021 | T7019 | pobj | mice,of |
R5628 | T7022 | T7022 | ROOT | are,are |
R5629 | T7023 | T7024 | advmod | highly,sensitive |
R5630 | T7024 | T7022 | acomp | sensitive,are |
R5631 | T7025 | T7024 | prep | to,sensitive |
R5632 | T7026 | T7028 | amod | TNFα-induced,death |
R5633 | T7027 | T7028 | compound | cell,death |
R5634 | T7028 | T7025 | pobj | death,to |
R5635 | T7029 | T7028 | cc | and,death |
R5636 | T7030 | T7032 | det | the,phenotype |
R5637 | T7031 | T7032 | compound | cpdm,phenotype |
R5638 | T7032 | T7028 | conj | phenotype,death |
R5639 | T7033 | T7036 | aux | can,rescued |
R5640 | T7034 | T7036 | auxpass | be,rescued |
R5641 | T7035 | T7036 | advmod | partially,rescued |
R5642 | T7036 | T7022 | conj | rescued,are |
R5643 | T7037 | T7036 | agent | by,rescued |
R5644 | T7038 | T7037 | pobj | deletion,by |
R5645 | T7039 | T7038 | prep | of,deletion |
R5646 | T7040 | T7041 | compound | TNF,[ |
R5647 | T7041 | T7043 | nmod | [,] |
R5648 | T7042 | T7043 | nummod | 7,] |
R5649 | T7043 | T7039 | pobj | ],of |
R5650 | T7044 | T7043 | punct | ",",] |
R5651 | T7045 | T7047 | nmod | [,] |
R5652 | T7046 | T7047 | nummod | 8,] |
R5653 | T7047 | T7043 | conj | ],] |
R5654 | T7048 | T7036 | punct | ",",rescued |
R5655 | T7049 | T7036 | advcl | suggesting,rescued |
R5656 | T7050 | T7054 | mark | that,compromises |
R5657 | T7051 | T7054 | nsubj | deficiency,compromises |
R5658 | T7052 | T7051 | prep | of,deficiency |
R5659 | T7053 | T7052 | pobj | SHARPIN,of |
R5660 | T7054 | T7049 | ccomp | compromises,suggesting |
R5661 | T7055 | T7057 | det | the,mechanisms |
R5662 | T7056 | T7057 | amod | anti-apoptotic,mechanisms |
R5663 | T7057 | T7054 | dobj | mechanisms,compromises |
R5664 | T7058 | T7054 | prep | in,compromises |
R5665 | T7059 | T7060 | compound | cpdm,mice |
R5666 | T7060 | T7058 | pobj | mice,in |
R5667 | T7061 | T7060 | acl | resulting,mice |
R5668 | T7062 | T7061 | prep | in,resulting |
R5669 | T7063 | T7066 | nmod | cell,disease |
R5670 | T7064 | T7066 | amod | death-induced,disease |
R5671 | T7065 | T7066 | amod | inflammatory,disease |
R5672 | T7066 | T7062 | pobj | disease,in |
R5673 | T7067 | T7036 | punct | .,rescued |
GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T9145 | 62-72 | http://purl.obolibrary.org/obo/GO_0008219 | denotes | cell death |
T9146 | 256-266 | http://purl.obolibrary.org/obo/GO_0008219 | denotes | cell death |
T9147 | 67-72 | http://purl.obolibrary.org/obo/GO_0016265 | denotes | death |
T9148 | 261-266 | http://purl.obolibrary.org/obo/GO_0016265 | denotes | death |
T9149 | 256-274 | http://purl.obolibrary.org/obo/GO_0043276 | denotes | cell death-induced |
T9150 | 256-274 | http://purl.obolibrary.org/obo/GO_0071888 | denotes | cell death-induced |
GO-CC
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T9199 | 62-66 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
T9200 | 256-260 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T6775 | 0-296 | Sentence | denotes | Fibroblasts of cpdm mice are highly sensitive to TNFα-induced cell death and the cpdm phenotype can be partially rescued by deletion of TNF [7], [8], suggesting that deficiency of SHARPIN compromises the anti-apoptotic mechanisms in cpdm mice resulting in cell death-induced inflammatory disease. |
T140 | 0-296 | Sentence | denotes | Fibroblasts of cpdm mice are highly sensitive to TNFα-induced cell death and the cpdm phenotype can be partially rescued by deletion of TNF [7], [8], suggesting that deficiency of SHARPIN compromises the anti-apoptotic mechanisms in cpdm mice resulting in cell death-induced inflammatory disease. |
events-check-again
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T9377 | 49-53 | Protein | denotes | TNFα |
T9378 | 124-132 | Negative_regulation | denotes | deletion |
T9379 | 136-139 | Protein | denotes | TNF |
T9380 | 166-176 | Negative_regulation | denotes | deficiency |
T9381 | 180-187 | Protein | denotes | SHARPIN |
R7739 | T9379 | T9378 | themeOf | TNF,deletion |
R7740 | T9381 | T9380 | themeOf | SHARPIN,deficiency |
bionlp-st-ge-2016-reference-tees
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T9459 | 49-53 | Protein | denotes | TNFα |
T9460 | 136-139 | Protein | denotes | TNF |
T9461 | 180-187 | Protein | denotes | SHARPIN |
T9462 | 166-176 | Negative_regulation | denotes | deficiency |
R7805 | T9461 | T9462 | themeOf | SHARPIN,deficiency |
bionlp-st-ge-2016-reference
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T6689 | 49-53 | Protein | denotes | TNFα |
T6690 | 124-132 | Negative_regulation | denotes | deletion |
T6691 | 136-139 | Protein | denotes | TNF |
T6692 | 166-176 | Negative_regulation | denotes | deficiency |
T6693 | 180-187 | Protein | denotes | SHARPIN |
R5373 | T6691 | T6690 | themeOf | TNF,deletion |
R5374 | T6693 | T6692 | themeOf | SHARPIN,deficiency |
bionlp-st-ge-2016-uniprot
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T9046 | 136-139 | P01375 | denotes | TNF |
T9047 | 180-187 | Q9H0F6 | denotes | SHARPIN |