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PMC:3245220 / 41545-42038 JSONTXT

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bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T19628 374-377 Q04206 denotes p65
T19629 374-377 P21579 denotes p65
T19630 379-382 Q04206 denotes p65
T19631 379-382 P21579 denotes p65

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T19442 374-377 Protein denotes p65
T19443 379-382 Protein denotes p65

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T19653 344-367 Protein denotes NFκB signaling subunits
T19654 368-373 Protein denotes NF-κB
T19655 374-377 Protein denotes p65
T19656 379-382 Protein denotes p65

events-check-again

Id Subject Object Predicate Lexical cue
T19651 374-377 Protein denotes p65
T19652 379-382 Protein denotes p65

GO-CC

Id Subject Object Predicate Lexical cue
T19637 0-4 http://purl.obolibrary.org/obo/GO_0005623 denotes Cell
T19638 35-39 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T19639 317-321 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T19640 386-390 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

GO-BP

Id Subject Object Predicate Lexical cue
T19635 234-241 http://purl.obolibrary.org/obo/GO_0051923 denotes sulfate
T19636 349-358 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T19542 0-4 NNP denotes Cell
T19543 5-12 NNP denotes Culture
T19544 13-16 DT denotes The
T19545 17-23 JJ denotes murine
T19546 24-34 NN denotes macrophage
T19547 35-39 NN denotes cell
T19548 40-44 NN denotes line
T19549 45-48 NN denotes RAW
T19550 49-54 CD denotes 264.7
T19551 55-58 VB denotes was
T19552 59-68 VB denotes purchased
T19553 69-73 IN denotes from
T19554 74-78 NN denotes ATCC
T19555 79-80 -LRB- denotes (
T19556 80-88 NNP denotes Manassas
T19557 88-89 -COMMA- denotes ,
T19558 90-92 NNP denotes VA
T19559 92-93 -RRB- denotes )
T19560 95-98 NN denotes RAW
T19561 99-104 CD denotes 264.7
T19562 105-110 NN denotes cells
T19563 111-115 VB denotes were
T19564 116-126 VB denotes maintained
T19565 127-129 IN denotes in
T19566 130-134 NN denotes RPMI
T19567 135-147 VB denotes supplemented
T19568 148-152 IN denotes with
T19569 153-154 CD denotes 5
T19570 154-155 NN denotes %
T19571 156-159 NN denotes FBS
T19572 160-163 CC denotes and
T19573 164-186 JJ denotes antibiotic-antimycotic
T19574 187-188 -LRB- denotes (
T19575 188-192 CD denotes 1000
T19576 193-197 NN denotes U/ml
T19577 198-208 NN denotes penicillin
T19578 208-209 -COMMA- denotes ,
T19579 210-214 CD denotes 1000
T19580 215-220 NN denotes µg/ml
T19581 221-233 NN denotes streptomycin
T19582 234-241 NN denotes sulfate
T19583 241-242 -COMMA- denotes ,
T19584 243-246 CC denotes and
T19585 247-250 CD denotes 250
T19586 251-256 NN denotes ng/ml
T19587 257-269 NN denotes amphotericin
T19588 270-271 NN denotes B
T19589 271-272 -RRB- denotes )
T19590 273-275 IN denotes at
T19591 276-281 NNP denotes 37°C.
T19592 282-287 NNP denotes Mouse
T19593 288-297 JJ denotes embryonic
T19594 298-309 NN denotes fibroblasts
T19595 310-311 -LRB- denotes (
T19596 311-315 NN denotes MEFs
T19597 315-316 -RRB- denotes )
T19598 317-321 NN denotes cell
T19599 322-326 NN denotes line
T19600 327-334 VB denotes lacking
T19601 335-343 JJ denotes specific
T19602 344-348 NN denotes NFκB
T19603 349-358 NN denotes signaling
T19604 359-367 NN denotes subunits
T19605 368-373 NN denotes NF-κB
T19606 374-377 NN denotes p65
T19607 378-379 -LRB- denotes (
T19608 379-385 NN denotes p65−/−
T19609 386-390 NN denotes cell
T19610 391-395 NN denotes line
T19611 395-396 -RRB- denotes )
T19612 397-398 -LRB- denotes [
T19613 398-400 CD denotes 50
T19614 400-401 -RRB- denotes ]
T19615 402-406 VB denotes were
T19616 407-415 VB denotes cultured
T19617 416-418 IN denotes in
T19618 419-423 NN denotes DMEM
T19619 424-430 NN denotes medium
T19620 431-443 VB denotes supplemented
T19621 444-448 IN denotes with
T19622 449-451 CD denotes 10
T19623 451-452 NN denotes %
T19624 453-456 NN denotes FBS
T19625 457-460 CC denotes and
T19626 461-483 JJ denotes antibiotic-antimycotic
T19627 484-492 NN denotes solution
R14572 T19543 T19542 arg1Of Culture,Cell
R14573 T19549 T19544 arg1Of RAW,The
R14574 T19549 T19545 arg1Of RAW,murine
R14575 T19549 T19546 arg1Of RAW,macrophage
R14576 T19549 T19547 arg1Of RAW,cell
R14577 T19549 T19548 arg1Of RAW,line
R14578 T19549 T19550 arg1Of RAW,264.7
R14579 T19549 T19551 arg1Of RAW,was
R14580 T19549 T19552 arg2Of RAW,purchased
R14581 T19552 T19551 arg2Of purchased,was
R14582 T19552 T19553 arg1Of purchased,from
R14583 T19552 T19555 arg1Of purchased,(
R14584 T19554 T19553 arg2Of ATCC,from
R14585 T19556 T19555 arg2Of Manassas,(
R14586 T19556 T19557 arg1Of Manassas,","
R14587 T19556 T19558 arg1Of Manassas,VA
R14588 T19559 T19555 arg3Of ),(
R14589 T19562 T19560 arg1Of cells,RAW
R14590 T19562 T19561 arg1Of cells,264.7
R14591 T19562 T19563 arg1Of cells,were
R14592 T19562 T19564 arg2Of cells,maintained
R14593 T19564 T19563 arg2Of maintained,were
R14594 T19564 T19565 arg1Of maintained,in
R14595 T19564 T19572 arg1Of maintained,and
R14596 T19566 T19565 arg2Of RPMI,in
R14597 T19566 T19567 arg2Of RPMI,supplemented
R14598 T19567 T19568 arg1Of supplemented,with
R14599 T19569 T19570 arg1Of 5,%
R14600 T19571 T19568 arg2Of FBS,with
R14601 T19571 T19569 arg1Of FBS,5
R14602 T19573 T19574 arg1Of antibiotic-antimycotic,(
R14603 T19573 T19590 arg1Of antibiotic-antimycotic,at
R14604 T19577 T19575 arg1Of penicillin,1000
R14605 T19577 T19576 arg1Of penicillin,U/ml
R14606 T19577 T19578 arg1Of penicillin,","
R14607 T19578 T19584 arg1Of ",",and
R14608 T19582 T19578 arg2Of sulfate,","
R14609 T19582 T19579 arg1Of sulfate,1000
R14610 T19582 T19580 arg1Of sulfate,µg/ml
R14611 T19582 T19581 arg1Of sulfate,streptomycin
R14612 T19584 T19574 arg2Of and,(
R14613 T19584 T19583 arg1Of and,","
R14614 T19585 T19586 arg1Of 250,ng/ml
R14615 T19588 T19584 arg2Of B,and
R14616 T19588 T19585 arg1Of B,250
R14617 T19588 T19587 arg1Of B,amphotericin
R14618 T19589 T19574 arg3Of ),(
R14619 T19592 T19591 arg1Of Mouse,37°C.
R14620 T19594 T19590 arg2Of fibroblasts,at
R14621 T19594 T19592 arg1Of fibroblasts,Mouse
R14622 T19594 T19593 arg1Of fibroblasts,embryonic
R14623 T19594 T19595 arg1Of fibroblasts,(
R14624 T19596 T19595 arg2Of MEFs,(
R14625 T19597 T19595 arg3Of ),(
R14626 T19599 T19573 arg1Of line,antibiotic-antimycotic
R14627 T19599 T19598 arg1Of line,cell
R14628 T19599 T19600 arg1Of line,lacking
R14629 T19599 T19615 arg1Of line,were
R14630 T19599 T19616 arg2Of line,cultured
R14631 T19600 T19612 arg1Of lacking,[
R14632 T19606 T19600 arg2Of p65,lacking
R14633 T19606 T19601 arg1Of p65,specific
R14634 T19606 T19602 arg1Of p65,NFκB
R14635 T19606 T19603 arg1Of p65,signaling
R14636 T19606 T19604 arg1Of p65,subunits
R14637 T19606 T19605 arg1Of p65,NF-κB
R14638 T19606 T19607 arg1Of p65,(
R14639 T19610 T19607 arg2Of line,(
R14640 T19610 T19608 arg1Of line,p65−/−
R14641 T19610 T19609 arg1Of line,cell
R14642 T19611 T19607 arg3Of ),(
R14643 T19613 T19612 arg2Of 50,[
R14644 T19614 T19612 arg3Of ],[
R14645 T19616 T19572 arg2Of cultured,and
R14646 T19616 T19615 arg2Of cultured,were
R14647 T19616 T19617 arg1Of cultured,in
R14648 T19619 T19617 arg2Of medium,in
R14649 T19619 T19618 arg1Of medium,DMEM
R14650 T19619 T19620 arg2Of medium,supplemented
R14651 T19620 T19621 arg1Of supplemented,with
R14652 T19622 T19623 arg1Of 10,%
R14653 T19624 T19622 arg1Of FBS,10
R14654 T19624 T19625 arg1Of FBS,and
R14655 T19625 T19621 arg2Of and,with
R14656 T19627 T19625 arg2Of solution,and
R14657 T19627 T19626 arg1Of solution,antibiotic-antimycotic

sentences

Id Subject Object Predicate Lexical cue
T19444 0-12 Sentence denotes Cell Culture
T19445 13-94 Sentence denotes The murine macrophage cell line RAW 264.7 was purchased from ATCC (Manassas, VA).
T19446 95-493 Sentence denotes RAW 264.7 cells were maintained in RPMI supplemented with 5% FBS and antibiotic-antimycotic (1000 U/ml penicillin, 1000 µg/ml streptomycin sulfate, and 250 ng/ml amphotericin B) at 37°C. Mouse embryonic fibroblasts (MEFs) cell line lacking specific NFκB signaling subunits NF-κB p65 (p65−/− cell line) [50] were cultured in DMEM medium supplemented with 10% FBS and antibiotic-antimycotic solution.
T287 0-12 Sentence denotes Cell Culture
T288 13-94 Sentence denotes The murine macrophage cell line RAW 264.7 was purchased from ATCC (Manassas, VA).
T289 95-281 Sentence denotes RAW 264.7 cells were maintained in RPMI supplemented with 5% FBS and antibiotic-antimycotic (1000 U/ml penicillin, 1000 µg/ml streptomycin sulfate, and 250 ng/ml amphotericin B) at 37°C.
T290 282-493 Sentence denotes Mouse embryonic fibroblasts (MEFs) cell line lacking specific NFκB signaling subunits NF-κB p65 (p65−/− cell line) [50] were cultured in DMEM medium supplemented with 10% FBS and antibiotic-antimycotic solution.

2_test

Id Subject Object Predicate Lexical cue
22216091-15923614-90609743 398-400 15923614 denotes 50

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T19447 0-4 NNP denotes Cell
T19448 5-12 NNP denotes Culture
T19449 13-16 NNP denotes The
T19450 17-23 JJ denotes murine
T19451 24-34 NN denotes macrophage
T19452 35-39 NN denotes cell
T19453 40-44 NN denotes line
T19454 45-48 NNP denotes RAW
T19455 49-54 CD denotes 264.7
T19456 55-58 VBD denotes was
T19457 59-68 VBN denotes purchased
T19458 69-73 IN denotes from
T19459 74-78 NNP denotes ATCC
T19460 79-80 -LRB- denotes (
T19461 80-88 NNP denotes Manassas
T19462 88-89 , denotes ,
T19463 90-92 NNP denotes VA
T19464 92-93 -RRB- denotes )
T19465 93-94 . denotes .
T19466 95-98 NNP denotes RAW
T19467 99-104 CD denotes 264.7
T19468 105-110 NNS denotes cells
T19469 111-115 VBD denotes were
T19470 116-126 VBN denotes maintained
T19471 127-129 IN denotes in
T19472 130-134 NNP denotes RPMI
T19473 135-147 VBN denotes supplemented
T19474 148-152 IN denotes with
T19475 153-154 CD denotes 5
T19476 154-155 NN denotes %
T19477 156-159 NNP denotes FBS
T19478 160-163 CC denotes and
T19479 164-186 JJ denotes antibiotic-antimycotic
T19480 187-188 -LRB- denotes (
T19481 188-192 CD denotes 1000
T19482 193-197 NNP denotes U/ml
T19483 198-208 NN denotes penicillin
T19484 208-209 , denotes ,
T19485 210-214 CD denotes 1000
T19486 215-217 NN denotes µg
T19487 217-218 NN denotes /
T19488 218-220 NN denotes ml
T19489 221-233 NN denotes streptomycin
T19490 234-241 NN denotes sulfate
T19491 241-242 , denotes ,
T19492 243-246 CC denotes and
T19493 247-250 CD denotes 250
T19494 251-256 JJ denotes ng/ml
T19495 257-269 NN denotes amphotericin
T19496 270-271 NNP denotes B
T19497 271-272 -RRB- denotes )
T19498 273-275 IN denotes at
T19499 276-278 CD denotes 37
T19500 278-279 CD denotes °
T19501 279-281 NNP denotes C.
T19502 282-287 NNP denotes Mouse
T19503 288-297 JJ denotes embryonic
T19504 298-309 NNS denotes fibroblasts
T19505 310-311 -LRB- denotes (
T19506 311-315 NNS denotes MEFs
T19507 315-316 -RRB- denotes )
T19508 317-321 NN denotes cell
T19509 322-326 NN denotes line
T19510 327-334 VBG denotes lacking
T19511 335-343 JJ denotes specific
T19512 344-348 NNP denotes NFκB
T19513 349-358 VBG denotes signaling
T19514 359-367 NNS denotes subunits
T19515 368-373 NNP denotes NF-κB
T19516 374-377 NNS denotes p65
T19517 378-379 -LRB- denotes (
T19518 379-382 CD denotes p65
T19519 382-383 CD denotes −
T19520 383-384 NN denotes /
T19521 384-385 NN denotes −
T19522 386-390 NN denotes cell
T19523 391-395 NN denotes line
T19524 395-396 -RRB- denotes )
T19525 397-398 NNP denotes [
T19526 398-400 CD denotes 50
T19527 400-401 NNP denotes ]
T19528 402-406 VBD denotes were
T19529 407-415 VBN denotes cultured
T19530 416-418 IN denotes in
T19531 419-423 NNP denotes DMEM
T19532 424-430 NN denotes medium
T19533 431-443 VBN denotes supplemented
T19534 444-448 IN denotes with
T19535 449-451 CD denotes 10
T19536 451-452 NN denotes %
T19537 453-456 NNP denotes FBS
T19538 457-460 CC denotes and
T19539 461-483 JJ denotes antibiotic-antimycotic
T19540 484-492 NN denotes solution
T19541 492-493 . denotes .
R14477 T19447 T19448 amod Cell,Culture
R14478 T19448 T19457 nsubjpass Culture,purchased
R14479 T19449 T19454 det The,RAW
R14480 T19450 T19453 amod murine,line
R14481 T19451 T19453 compound macrophage,line
R14482 T19452 T19453 compound cell,line
R14483 T19453 T19454 compound line,RAW
R14484 T19454 T19448 appos RAW,Culture
R14485 T19455 T19454 nummod 264.7,RAW
R14486 T19456 T19457 auxpass was,purchased
R14487 T19457 T19457 ROOT purchased,purchased
R14488 T19458 T19457 prep from,purchased
R14489 T19459 T19458 pobj ATCC,from
R14490 T19460 T19459 punct (,ATCC
R14491 T19461 T19459 appos Manassas,ATCC
R14492 T19462 T19459 punct ",",ATCC
R14493 T19463 T19459 appos VA,ATCC
R14494 T19464 T19459 punct ),ATCC
R14495 T19465 T19457 punct .,purchased
R14496 T19466 T19470 nsubjpass RAW,maintained
R14497 T19467 T19468 nummod 264.7,cells
R14498 T19468 T19470 nsubjpass cells,maintained
R14499 T19469 T19470 auxpass were,maintained
R14500 T19470 T19470 ROOT maintained,maintained
R14501 T19471 T19470 prep in,maintained
R14502 T19472 T19471 pobj RPMI,in
R14503 T19473 T19470 conj supplemented,maintained
R14504 T19474 T19473 prep with,supplemented
R14505 T19475 T19476 nummod 5,%
R14506 T19476 T19490 nmod %,sulfate
R14507 T19477 T19490 nmod FBS,sulfate
R14508 T19478 T19477 cc and,FBS
R14509 T19479 T19477 conj antibiotic-antimycotic,FBS
R14510 T19480 T19483 punct (,penicillin
R14511 T19481 T19483 nummod 1000,penicillin
R14512 T19482 T19483 compound U/ml,penicillin
R14513 T19483 T19490 nmod penicillin,sulfate
R14514 T19484 T19483 punct ",",penicillin
R14515 T19485 T19486 nummod 1000,µg
R14516 T19486 T19490 compound µg,sulfate
R14517 T19487 T19490 nmod /,sulfate
R14518 T19488 T19490 compound ml,sulfate
R14519 T19489 T19490 compound streptomycin,sulfate
R14520 T19490 T19474 pobj sulfate,with
R14521 T19491 T19473 punct ",",supplemented
R14522 T19492 T19473 cc and,supplemented
R14523 T19493 T19496 nummod 250,B
R14524 T19494 T19496 compound ng/ml,B
R14525 T19495 T19496 compound amphotericin,B
R14526 T19496 T19470 npadvmod B,maintained
R14527 T19497 T19496 punct ),B
R14528 T19498 T19470 prep at,maintained
R14529 T19499 T19500 nummod 37,°
R14530 T19500 T19504 nummod °,fibroblasts
R14531 T19501 T19502 compound C.,Mouse
R14532 T19502 T19504 nmod Mouse,fibroblasts
R14533 T19503 T19504 amod embryonic,fibroblasts
R14534 T19504 T19498 pobj fibroblasts,at
R14535 T19505 T19504 punct (,fibroblasts
R14536 T19506 T19504 appos MEFs,fibroblasts
R14537 T19507 T19504 punct ),fibroblasts
R14538 T19508 T19509 compound cell,line
R14539 T19509 T19470 conj line,maintained
R14540 T19510 T19509 acl lacking,line
R14541 T19511 T19514 amod specific,subunits
R14542 T19512 T19514 nmod NFκB,subunits
R14543 T19513 T19514 nsubj signaling,subunits
R14544 T19514 T19510 dobj subunits,lacking
R14545 T19515 T19516 compound NF-κB,p65
R14546 T19516 T19514 appos p65,subunits
R14547 T19517 T19516 punct (,p65
R14548 T19518 T19519 nummod p65,−
R14549 T19519 T19520 nummod −,/
R14550 T19520 T19523 nmod /,line
R14551 T19521 T19523 compound −,line
R14552 T19522 T19523 compound cell,line
R14553 T19523 T19516 appos line,p65
R14554 T19524 T19514 punct ),subunits
R14555 T19525 T19527 nmod [,]
R14556 T19526 T19527 nummod 50,]
R14557 T19527 T19529 nsubjpass ],cultured
R14558 T19528 T19529 auxpass were,cultured
R14559 T19529 T19529 ROOT cultured,cultured
R14560 T19530 T19529 prep in,cultured
R14561 T19531 T19532 compound DMEM,medium
R14562 T19532 T19530 pobj medium,in
R14563 T19533 T19529 conj supplemented,cultured
R14564 T19534 T19533 prep with,supplemented
R14565 T19535 T19536 nummod 10,%
R14566 T19536 T19540 nmod %,solution
R14567 T19537 T19540 nmod FBS,solution
R14568 T19538 T19537 cc and,FBS
R14569 T19539 T19540 amod antibiotic-antimycotic,solution
R14570 T19540 T19534 pobj solution,with
R14571 T19541 T19529 punct .,cultured

test2

Id Subject Object Predicate Lexical cue
T19440 374-377 Protein denotes p65
T19441 379-382 Protein denotes p65
R14476 T19441 T19440 equivalentTo p65,p65