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PMC:3245220 / 3924-4162 JSONTXT

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bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3353 116-119 Q04206 denotes p65
T3354 116-119 P21579 denotes p65
T3355 141-145 O75582 denotes MSK1

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T3412 123-137 Phosphorylation denotes phosphorylated
T3467 116-119 Protein denotes p65
T3468 141-145 Protein denotes MSK1
T3484 100-106 Entity denotes Ser276
R2943 T3484 T3412 themeOf Ser276,phosphorylated
R2946 T3484 T3467 partOf Ser276,p65
R2959 T3468 T3412 causeOf MSK1,phosphorylated

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T4455 52-57 Protein denotes NF-κB
T4457 67-71 Protein denotes TNFα
T4458 110-119 Protein denotes NF-κB p65
T4459 141-145 Protein denotes MSK1
T4460 157-162 Protein denotes NF-κB
T4461 123-137 Phosphorylation denotes phosphorylated
T4462 149-156 Positive_regulation denotes enhance
T4463 233-238 Protein denotes NF-κB
R3328 T4460 T4462 themeOf NF-κB,enhance
R3372 T4458 T4461 themeOf NF-κB p65,phosphorylated

events-check-again

Id Subject Object Predicate Lexical cue
T4306 100-106 Entity denotes Ser276
T4307 116-119 Protein denotes p65
T4308 123-137 Phosphorylation denotes phosphorylated
T4309 141-145 Protein denotes MSK1
R3279 T4306 T4308 themeOf Ser276,phosphorylated
R3280 T4306 T4307 partOf Ser276,p65
R3281 T4309 T4308 causeOf MSK1,phosphorylated

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T2621 5-9 NN denotes role
T2622 10-12 IN denotes in
T2623 13-23 VB denotes regulating
T2624 24-39 JJ denotes transcriptional
T2625 40-48 NN denotes activity
T2626 49-51 IN denotes of
T2627 52-57 NN denotes NF-κB
T2628 58-59 -LRB- denotes [
T2629 59-61 CD denotes 17
T2630 61-62 -RRB- denotes ]
T2631 64-66 IN denotes In
T2632 67-79 JJ denotes TNFα-treated
T2633 80-86 JJ denotes murine
T2634 87-98 NN denotes fibroblasts
T2635 98-99 -COMMA- denotes ,
T2636 100-106 NN denotes Ser276
T2637 107-109 IN denotes of
T2638 110-115 NN denotes NF-κB
T2639 116-119 NN denotes p65
T2640 120-122 VB denotes is
T2641 123-137 VB denotes phosphorylated
T2642 138-140 IN denotes by
T2643 141-145 NN denotes MSK1
T2644 146-148 TO denotes to
T2645 149-156 VB denotes enhance
T2646 157-162 NN denotes NF-κB
T2647 163-178 JJ denotes transcriptional
T2648 179-187 NN denotes activity
T2649 188-189 -LRB- denotes [
T2650 189-191 CD denotes 18
T2651 191-192 -RRB- denotes ]
T2652 194-196 IN denotes In
T2653 197-208 NN denotes macrophages
T2654 209-216 VB denotes treated
T2655 217-221 IN denotes with
T2656 222-231 NN denotes endotoxin
T2657 231-232 -COMMA- denotes ,
T2658 233-238 NN denotes NF-κB
R2211 T2623 T2622 arg2Of regulating,in
R2212 T2623 T2628 arg1Of regulating,[
R2214 T2625 T2623 arg2Of activity,regulating
R2215 T2625 T2624 arg1Of activity,transcriptional
R2216 T2625 T2626 arg1Of activity,of
R2217 T2627 T2626 arg2Of NF-κB,of
R2218 T2629 T2628 arg2Of 17,[
R2219 T2630 T2628 arg3Of ],[
R2224 T2634 T2631 arg2Of fibroblasts,In
R2225 T2634 T2632 arg1Of fibroblasts,TNFα-treated
R2226 T2634 T2633 arg1Of fibroblasts,murine
R2228 T2636 T2637 arg1Of Ser276,of
R2229 T2636 T2640 arg1Of Ser276,is
R2230 T2636 T2641 arg2Of Ser276,phosphorylated
R2232 T2639 T2637 arg2Of p65,of
R2233 T2639 T2638 arg1Of p65,NF-κB
R2234 T2641 T2631 arg1Of phosphorylated,In
R2235 T2641 T2635 arg1Of phosphorylated,","
R2236 T2641 T2640 arg2Of phosphorylated,is
R2237 T2641 T2644 modOf phosphorylated,to
R2238 T2643 T2641 arg1Of MSK1,phosphorylated
R2239 T2643 T2642 arg2Of MSK1,by
R2240 T2645 T2644 arg1Of enhance,to
R2242 T2648 T2645 arg2Of activity,enhance
R2243 T2648 T2646 arg1Of activity,NF-κB
R2244 T2648 T2647 arg1Of activity,transcriptional
R2245 T2648 T2649 arg1Of activity,[
R2247 T2650 T2649 arg2Of 18,[
R2248 T2651 T2649 arg3Of ],[
R2251 T2653 T2652 arg2Of macrophages,In
R2252 T2653 T2654 arg2Of macrophages,treated
R2253 T2654 T2655 arg1Of treated,with
R2254 T2656 T2655 arg2Of endotoxin,with

sentences

Id Subject Object Predicate Lexical cue
T989 64-193 Sentence denotes In TNFα-treated murine fibroblasts, Ser276 of NF-κB p65 is phosphorylated by MSK1 to enhance NF-κB transcriptional activity [18].
T32 64-193 Sentence denotes In TNFα-treated murine fibroblasts, Ser276 of NF-κB p65 is phosphorylated by MSK1 to enhance NF-κB transcriptional activity [18].

2_test

Id Subject Object Predicate Lexical cue
22216091-15122352-90609688 59-61 15122352 denotes 17
22216091-12628924-90609689 189-191 12628924 denotes 18

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1472 5-9 NN denotes role
T1473 10-12 IN denotes in
T1474 13-23 VBG denotes regulating
T1475 24-39 JJ denotes transcriptional
T1476 40-48 NN denotes activity
T1477 49-51 IN denotes of
T1478 52-57 NNP denotes NF-κB
T1479 58-59 NNP denotes [
T1480 59-61 CD denotes 17
T1481 61-62 NNP denotes ]
T1482 62-63 . denotes .
T1483 64-66 IN denotes In
T1484 67-79 JJ denotes TNFα-treated
T1485 80-86 NN denotes murine
T1486 87-98 NNS denotes fibroblasts
T1487 98-99 , denotes ,
T1488 100-106 NNP denotes Ser276
T1489 107-109 IN denotes of
T1490 110-115 NNP denotes NF-κB
T1491 116-119 CD denotes p65
T1492 120-122 VBZ denotes is
T1493 123-137 VBN denotes phosphorylated
T1494 138-140 IN denotes by
T1495 141-145 CD denotes MSK1
T1496 146-148 TO denotes to
T1497 149-156 VB denotes enhance
T1498 157-162 JJ denotes NF-κB
T1499 163-178 JJ denotes transcriptional
T1500 179-187 NN denotes activity
T1501 188-189 NNP denotes [
T1502 189-191 CD denotes 18
T1503 191-192 NNP denotes ]
T1504 192-193 . denotes .
T1505 194-196 IN denotes In
T1506 197-208 NNS denotes macrophages
T1507 209-216 VBN denotes treated
T1508 217-221 IN denotes with
T1509 222-231 NN denotes endotoxin
T1510 231-232 , denotes ,
T1511 233-238 JJ denotes NF-κB
R1101 T1473 T1472 prep in,role
R1102 T1474 T1473 pcomp regulating,in
R1103 T1475 T1476 amod transcriptional,activity
R1104 T1476 T1474 dobj activity,regulating
R1105 T1477 T1476 prep of,activity
R1106 T1478 T1479 compound NF-κB,[
R1107 T1479 T1477 pobj [,of
R1108 T1480 T1481 nummod 17,]
R1109 T1481 T1474 dobj ],regulating
R1111 T1483 T1493 prep In,phosphorylated
R1112 T1484 T1486 amod TNFα-treated,fibroblasts
R1113 T1485 T1486 compound murine,fibroblasts
R1114 T1486 T1483 pobj fibroblasts,In
R1115 T1487 T1493 punct ",",phosphorylated
R1116 T1488 T1493 nsubjpass Ser276,phosphorylated
R1117 T1489 T1488 prep of,Ser276
R1118 T1490 T1489 pobj NF-κB,of
R1119 T1491 T1490 nummod p65,NF-κB
R1120 T1492 T1493 auxpass is,phosphorylated
R1121 T1493 T1493 ROOT phosphorylated,phosphorylated
R1122 T1494 T1493 agent by,phosphorylated
R1123 T1495 T1494 pobj MSK1,by
R1124 T1496 T1497 aux to,enhance
R1125 T1497 T1493 advcl enhance,phosphorylated
R1126 T1498 T1500 amod NF-κB,activity
R1127 T1499 T1500 amod transcriptional,activity
R1128 T1500 T1497 dobj activity,enhance
R1129 T1501 T1503 nmod [,]
R1130 T1502 T1503 nummod 18,]
R1131 T1503 T1500 appos ],activity
R1132 T1504 T1493 punct .,phosphorylated
R1134 T1506 T1505 pobj macrophages,In
R1135 T1507 T1506 acl treated,macrophages
R1136 T1508 T1507 prep with,treated
R1137 T1509 T1508 pobj endotoxin,with

test2

Id Subject Object Predicate Lexical cue
T951 100-106 Entity denotes Ser276
T952 116-119 Protein denotes p65
T953 123-137 Phosphorylation denotes phosphorylated
T954 141-145 Protein denotes MSK1
R639 T951 T953 themeOf Ser276,phosphorylated
R640 T951 T952 partOf Ser276,p65
R641 T954 T953 causeOf MSK1,phosphorylated