PMC:3245220 / 14033-15167
Annnotations
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T23953","span":{"begin":255,"end":260},"obj":"P09603"},{"id":"T23954","span":{"begin":257,"end":260},"obj":"P04141"},{"id":"T23955","span":{"begin":449,"end":458},"obj":"P42574"},{"id":"T23956","span":{"begin":490,"end":497},"obj":"P60709"},{"id":"T23957","span":{"begin":552,"end":561},"obj":"P42574"},{"id":"T23958","span":{"begin":589,"end":596},"obj":"P60709"},{"id":"T23959","span":{"begin":778,"end":787},"obj":"P08758"},{"id":"T23960","span":{"begin":895,"end":904},"obj":"P08758"},{"id":"T23961","span":{"begin":953,"end":958},"obj":"P09603"},{"id":"T23962","span":{"begin":955,"end":958},"obj":"P04141"},{"id":"T23963","span":{"begin":1089,"end":1094},"obj":"P09603"},{"id":"T23964","span":{"begin":1091,"end":1094},"obj":"P04141"},{"id":"T23965","span":{"begin":1115,"end":1120},"obj":"P09603"},{"id":"T23966","span":{"begin":1117,"end":1120},"obj":"P04141"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"10.1371/journal.pone.0028081.g003 Figure 3 Inhibition of PKC or NF-κB induces apoptosis in MDMs.\n(A) MDMs were pre-incubated in RPMI medium containing inhibitors (Ro-31-8220: 5 µM, Gö-6976: 5 µM, BAPTA/AM: 2.5 µM) for 30 minutes prior to the addition of M-CSF. As a control, untreated cells were incubated with dimethyl sulfoxide (DMSO). Cell lysates were resolved by SDS-PAGE and immunoblotted with antibody recognizing the active cleaved form of caspase-3. The blots were reblotted with β-actin that served as a loading control. The ratio of active caspase-3 bands (17 kD and 19 kD) to β-actin control was determined by densitometry analysis (bottom panel). Data represents the mean ± S.E.M from two independent donors. (B) Apoptosis of the treated MDMs was also measured by Annexin V-FITC and propidium iodine (PI) staining and analyzed by flow cytometry. The percentage of surviving cells (Annexin V/PI negative) for the cells treated with vehicle/M-CSF was arbitrarily set as 100. Data shown represent the mean ± S.E.M from three independent experiments. *The p-values of inhibitors/M-CSF compared to vehicle/M-CSF were ≤0.05. "}
bionlp-st-ge-2016-reference
{"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T23967","span":{"begin":545,"end":551},"obj":"Positive_regulation"},{"id":"T23968","span":{"begin":908,"end":916},"obj":"Negative_regulation"},{"id":"T23969","span":{"begin":490,"end":497},"obj":"Protein"},{"id":"T23970","span":{"begin":552,"end":561},"obj":"Protein"},{"id":"T23971","span":{"begin":589,"end":596},"obj":"Protein"},{"id":"T23972","span":{"begin":778,"end":787},"obj":"Protein"},{"id":"T23973","span":{"begin":895,"end":904},"obj":"Protein"},{"id":"T23974","span":{"begin":255,"end":260},"obj":"Protein"},{"id":"T23975","span":{"begin":953,"end":958},"obj":"Protein"},{"id":"T23976","span":{"begin":1089,"end":1094},"obj":"Protein"},{"id":"T23977","span":{"begin":1115,"end":1120},"obj":"Protein"}],"relations":[{"id":"R18343","pred":"themeOf","subj":"T23970","obj":"T23967"},{"id":"R18344","pred":"themeOf","subj":"T23973","obj":"T23968"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"10.1371/journal.pone.0028081.g003 Figure 3 Inhibition of PKC or NF-κB induces apoptosis in MDMs.\n(A) MDMs were pre-incubated in RPMI medium containing inhibitors (Ro-31-8220: 5 µM, Gö-6976: 5 µM, BAPTA/AM: 2.5 µM) for 30 minutes prior to the addition of M-CSF. As a control, untreated cells were incubated with dimethyl sulfoxide (DMSO). Cell lysates were resolved by SDS-PAGE and immunoblotted with antibody recognizing the active cleaved form of caspase-3. The blots were reblotted with β-actin that served as a loading control. The ratio of active caspase-3 bands (17 kD and 19 kD) to β-actin control was determined by densitometry analysis (bottom panel). Data represents the mean ± S.E.M from two independent donors. (B) Apoptosis of the treated MDMs was also measured by Annexin V-FITC and propidium iodine (PI) staining and analyzed by flow cytometry. The percentage of surviving cells (Annexin V/PI negative) for the cells treated with vehicle/M-CSF was arbitrarily set as 100. Data shown represent the mean ± S.E.M from three independent experiments. *The p-values of inhibitors/M-CSF compared to vehicle/M-CSF were ≤0.05. "}
bionlp-st-ge-2016-reference-tees
{"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T24061","span":{"begin":58,"end":61},"obj":"Protein"},{"id":"T24062","span":{"begin":65,"end":70},"obj":"Protein"},{"id":"T24063","span":{"begin":44,"end":54},"obj":"Negative_regulation"},{"id":"T24064","span":{"begin":44,"end":54},"obj":"Negative_regulation"},{"id":"T24065","span":{"begin":255,"end":260},"obj":"Protein"},{"id":"T24066","span":{"begin":449,"end":458},"obj":"Protein"},{"id":"T24067","span":{"begin":490,"end":497},"obj":"Protein"},{"id":"T24068","span":{"begin":552,"end":561},"obj":"Protein"},{"id":"T24069","span":{"begin":589,"end":596},"obj":"Protein"},{"id":"T24070","span":{"begin":597,"end":604},"obj":"Regulation"},{"id":"T24071","span":{"begin":1089,"end":1094},"obj":"Protein"}],"relations":[{"id":"R18355","pred":"themeOf","subj":"T24061","obj":"T24063"},{"id":"R18356","pred":"themeOf","subj":"T24062","obj":"T24064"},{"id":"R18357","pred":"themeOf","subj":"T24069","obj":"T24070"}],"text":"10.1371/journal.pone.0028081.g003 Figure 3 Inhibition of PKC or NF-κB induces apoptosis in MDMs.\n(A) MDMs were pre-incubated in RPMI medium containing inhibitors (Ro-31-8220: 5 µM, Gö-6976: 5 µM, BAPTA/AM: 2.5 µM) for 30 minutes prior to the addition of M-CSF. As a control, untreated cells were incubated with dimethyl sulfoxide (DMSO). Cell lysates were resolved by SDS-PAGE and immunoblotted with antibody recognizing the active cleaved form of caspase-3. The blots were reblotted with β-actin that served as a loading control. The ratio of active caspase-3 bands (17 kD and 19 kD) to β-actin control was determined by densitometry analysis (bottom panel). Data represents the mean ± S.E.M from two independent donors. (B) Apoptosis of the treated MDMs was also measured by Annexin V-FITC and propidium iodine (PI) staining and analyzed by flow cytometry. The percentage of surviving cells (Annexin V/PI negative) for the cells treated with vehicle/M-CSF was arbitrarily set as 100. Data shown represent the mean ± S.E.M from three independent experiments. *The p-values of inhibitors/M-CSF compared to vehicle/M-CSF were ≤0.05. "}
events-check-again
{"project":"events-check-again","denotations":[{"id":"T24050","span":{"begin":255,"end":260},"obj":"Protein"},{"id":"T24051","span":{"begin":490,"end":497},"obj":"Protein"},{"id":"T24052","span":{"begin":545,"end":551},"obj":"Positive_regulation"},{"id":"T24053","span":{"begin":552,"end":561},"obj":"Protein"},{"id":"T24054","span":{"begin":589,"end":596},"obj":"Protein"},{"id":"T24055","span":{"begin":778,"end":787},"obj":"Protein"},{"id":"T24056","span":{"begin":895,"end":904},"obj":"Protein"},{"id":"T24057","span":{"begin":908,"end":916},"obj":"Negative_regulation"},{"id":"T24058","span":{"begin":953,"end":958},"obj":"Protein"},{"id":"T24059","span":{"begin":1089,"end":1094},"obj":"Protein"},{"id":"T24060","span":{"begin":1115,"end":1120},"obj":"Protein"}],"relations":[{"id":"R18353","pred":"themeOf","subj":"T24053","obj":"T24052"},{"id":"R18354","pred":"themeOf","subj":"T24056","obj":"T24057"}],"text":"10.1371/journal.pone.0028081.g003 Figure 3 Inhibition of PKC or NF-κB induces apoptosis in MDMs.\n(A) MDMs were pre-incubated in RPMI medium containing inhibitors (Ro-31-8220: 5 µM, Gö-6976: 5 µM, BAPTA/AM: 2.5 µM) for 30 minutes prior to the addition of M-CSF. As a control, untreated cells were incubated with dimethyl sulfoxide (DMSO). Cell lysates were resolved by SDS-PAGE and immunoblotted with antibody recognizing the active cleaved form of caspase-3. The blots were reblotted with β-actin that served as a loading control. The ratio of active caspase-3 bands (17 kD and 19 kD) to β-actin control was determined by densitometry analysis (bottom panel). Data represents the mean ± S.E.M from two independent donors. (B) Apoptosis of the treated MDMs was also measured by Annexin V-FITC and propidium iodine (PI) staining and analyzed by flow cytometry. The percentage of surviving cells (Annexin V/PI negative) for the cells treated with vehicle/M-CSF was arbitrarily set as 100. Data shown represent the mean ± S.E.M from three independent experiments. *The p-values of inhibitors/M-CSF compared to vehicle/M-CSF were ≤0.05. "}
GO-CC
{"project":"GO-CC","denotations":[{"id":"T23992","span":{"begin":286,"end":291},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T23993","span":{"begin":888,"end":893},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T23994","span":{"begin":926,"end":931},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T23995","span":{"begin":401,"end":409},"obj":"http://purl.obolibrary.org/obo/GO_0019815"},{"id":"T23996","span":{"begin":401,"end":409},"obj":"http://purl.obolibrary.org/obo/GO_0042571"}],"text":"10.1371/journal.pone.0028081.g003 Figure 3 Inhibition of PKC or NF-κB induces apoptosis in MDMs.\n(A) MDMs were pre-incubated in RPMI medium containing inhibitors (Ro-31-8220: 5 µM, Gö-6976: 5 µM, BAPTA/AM: 2.5 µM) for 30 minutes prior to the addition of M-CSF. As a control, untreated cells were incubated with dimethyl sulfoxide (DMSO). Cell lysates were resolved by SDS-PAGE and immunoblotted with antibody recognizing the active cleaved form of caspase-3. The blots were reblotted with β-actin that served as a loading control. The ratio of active caspase-3 bands (17 kD and 19 kD) to β-actin control was determined by densitometry analysis (bottom panel). Data represents the mean ± S.E.M from two independent donors. (B) Apoptosis of the treated MDMs was also measured by Annexin V-FITC and propidium iodine (PI) staining and analyzed by flow cytometry. The percentage of surviving cells (Annexin V/PI negative) for the cells treated with vehicle/M-CSF was arbitrarily set as 100. Data shown represent the mean ± S.E.M from three independent experiments. *The p-values of inhibitors/M-CSF compared to vehicle/M-CSF were ≤0.05. "}
GO-MF
{"project":"GO-MF","denotations":[{"id":"T23990","span":{"begin":58,"end":61},"obj":"http://purl.obolibrary.org/obo/GO_0004697"},{"id":"T23991","span":{"begin":401,"end":409},"obj":"http://purl.obolibrary.org/obo/GO_0003823"}],"text":"10.1371/journal.pone.0028081.g003 Figure 3 Inhibition of PKC or NF-κB induces apoptosis in MDMs.\n(A) MDMs were pre-incubated in RPMI medium containing inhibitors (Ro-31-8220: 5 µM, Gö-6976: 5 µM, BAPTA/AM: 2.5 µM) for 30 minutes prior to the addition of M-CSF. As a control, untreated cells were incubated with dimethyl sulfoxide (DMSO). Cell lysates were resolved by SDS-PAGE and immunoblotted with antibody recognizing the active cleaved form of caspase-3. The blots were reblotted with β-actin that served as a loading control. The ratio of active caspase-3 bands (17 kD and 19 kD) to β-actin control was determined by densitometry analysis (bottom panel). Data represents the mean ± S.E.M from two independent donors. (B) Apoptosis of the treated MDMs was also measured by Annexin V-FITC and propidium iodine (PI) staining and analyzed by flow cytometry. The percentage of surviving cells (Annexin V/PI negative) for the cells treated with vehicle/M-CSF was arbitrarily set as 100. Data shown represent the mean ± S.E.M from three independent experiments. *The p-values of inhibitors/M-CSF compared to vehicle/M-CSF were ≤0.05. "}
GO-BP
{"project":"GO-BP","denotations":[{"id":"T24072","span":{"begin":79,"end":88},"obj":"http://purl.obolibrary.org/obo/GO_0006915"},{"id":"T24073","span":{"begin":727,"end":736},"obj":"http://purl.obolibrary.org/obo/GO_0006915"},{"id":"T24074","span":{"begin":79,"end":88},"obj":"http://purl.obolibrary.org/obo/GO_0097194"},{"id":"T24075","span":{"begin":727,"end":736},"obj":"http://purl.obolibrary.org/obo/GO_0097194"}],"text":"10.1371/journal.pone.0028081.g003 Figure 3 Inhibition of PKC or NF-κB induces apoptosis in MDMs.\n(A) MDMs were pre-incubated in RPMI medium containing inhibitors (Ro-31-8220: 5 µM, Gö-6976: 5 µM, BAPTA/AM: 2.5 µM) for 30 minutes prior to the addition of M-CSF. As a control, untreated cells were incubated with dimethyl sulfoxide (DMSO). Cell lysates were resolved by SDS-PAGE and immunoblotted with antibody recognizing the active cleaved form of caspase-3. The blots were reblotted with β-actin that served as a loading control. The ratio of active caspase-3 bands (17 kD and 19 kD) to β-actin control was determined by densitometry analysis (bottom panel). Data represents the mean ± S.E.M from two independent donors. (B) Apoptosis of the treated MDMs was also measured by Annexin V-FITC and propidium iodine (PI) staining and analyzed by flow cytometry. The percentage of surviving cells (Annexin V/PI negative) for the cells treated with vehicle/M-CSF was arbitrarily set as 100. Data shown represent the mean ± S.E.M from three independent experiments. *The p-values of inhibitors/M-CSF compared to vehicle/M-CSF were ≤0.05. "}
pmc-enju-pas
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Figure 3 Inhibition of PKC or NF-κB induces apoptosis in MDMs.\n(A) MDMs were pre-incubated in RPMI medium containing inhibitors (Ro-31-8220: 5 µM, Gö-6976: 5 µM, BAPTA/AM: 2.5 µM) for 30 minutes prior to the addition of M-CSF. As a control, untreated cells were incubated with dimethyl sulfoxide (DMSO). Cell lysates were resolved by SDS-PAGE and immunoblotted with antibody recognizing the active cleaved form of caspase-3. The blots were reblotted with β-actin that served as a loading control. The ratio of active caspase-3 bands (17 kD and 19 kD) to β-actin control was determined by densitometry analysis (bottom panel). Data represents the mean ± S.E.M from two independent donors. (B) Apoptosis of the treated MDMs was also measured by Annexin V-FITC and propidium iodine (PI) staining and analyzed by flow cytometry. The percentage of surviving cells (Annexin V/PI negative) for the cells treated with vehicle/M-CSF was arbitrarily set as 100. Data shown represent the mean ± S.E.M from three independent experiments. *The p-values of inhibitors/M-CSF compared to vehicle/M-CSF were ≤0.05. "}
sentences
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bionlp-st-ge-2016-spacy-parsed
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Figure 3 Inhibition of PKC or NF-κB induces apoptosis in MDMs.\n(A) MDMs were pre-incubated in RPMI medium containing inhibitors (Ro-31-8220: 5 µM, Gö-6976: 5 µM, BAPTA/AM: 2.5 µM) for 30 minutes prior to the addition of M-CSF. As a control, untreated cells were incubated with dimethyl sulfoxide (DMSO). Cell lysates were resolved by SDS-PAGE and immunoblotted with antibody recognizing the active cleaved form of caspase-3. The blots were reblotted with β-actin that served as a loading control. The ratio of active caspase-3 bands (17 kD and 19 kD) to β-actin control was determined by densitometry analysis (bottom panel). Data represents the mean ± S.E.M from two independent donors. (B) Apoptosis of the treated MDMs was also measured by Annexin V-FITC and propidium iodine (PI) staining and analyzed by flow cytometry. The percentage of surviving cells (Annexin V/PI negative) for the cells treated with vehicle/M-CSF was arbitrarily set as 100. Data shown represent the mean ± S.E.M from three independent experiments. *The p-values of inhibitors/M-CSF compared to vehicle/M-CSF were ≤0.05. "}
test2
{"project":"test2","denotations":[{"id":"T23538","span":{"begin":255,"end":260},"obj":"Protein"},{"id":"T23539","span":{"begin":490,"end":497},"obj":"Protein"},{"id":"T23540","span":{"begin":552,"end":561},"obj":"Protein"},{"id":"T23541","span":{"begin":589,"end":596},"obj":"Protein"},{"id":"T23542","span":{"begin":778,"end":787},"obj":"Protein"},{"id":"T23543","span":{"begin":895,"end":904},"obj":"Protein"},{"id":"T23544","span":{"begin":908,"end":916},"obj":"Negative_regulation"},{"id":"T23545","span":{"begin":953,"end":958},"obj":"Protein"},{"id":"T23546","span":{"begin":1089,"end":1094},"obj":"Protein"},{"id":"T23547","span":{"begin":1115,"end":1120},"obj":"Protein"}],"relations":[{"id":"R17950","pred":"themeOf","subj":"T23543","obj":"T23544"}],"text":"10.1371/journal.pone.0028081.g003 Figure 3 Inhibition of PKC or NF-κB induces apoptosis in MDMs.\n(A) MDMs were pre-incubated in RPMI medium containing inhibitors (Ro-31-8220: 5 µM, Gö-6976: 5 µM, BAPTA/AM: 2.5 µM) for 30 minutes prior to the addition of M-CSF. As a control, untreated cells were incubated with dimethyl sulfoxide (DMSO). Cell lysates were resolved by SDS-PAGE and immunoblotted with antibody recognizing the active cleaved form of caspase-3. The blots were reblotted with β-actin that served as a loading control. The ratio of active caspase-3 bands (17 kD and 19 kD) to β-actin control was determined by densitometry analysis (bottom panel). Data represents the mean ± S.E.M from two independent donors. (B) Apoptosis of the treated MDMs was also measured by Annexin V-FITC and propidium iodine (PI) staining and analyzed by flow cytometry. The percentage of surviving cells (Annexin V/PI negative) for the cells treated with vehicle/M-CSF was arbitrarily set as 100. Data shown represent the mean ± S.E.M from three independent experiments. *The p-values of inhibitors/M-CSF compared to vehicle/M-CSF were ≤0.05. "}