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PMC:3218875 / 9400-9533 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T19287 0-5 Protein denotes TRAF1

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T20355 132-133 . denotes .
T20354 127-132 NNS denotes TRAFs
T20353 121-126 JJ denotes other
T20352 116-120 IN denotes with
T20351 106-115 VBG denotes competing
T20350 103-105 IN denotes by
T20349 94-102 RB denotes probably
T20348 89-93 JJS denotes most
T20347 87-88 , denotes ,
T20346 77-87 NN denotes activation
T20345 71-76 JJ denotes NF-κB
T20344 62-70 VB denotes regulate
T20343 51-61 RB denotes negatively
T20342 47-50 MD denotes can
T20341 45-46 , denotes ,
T20340 37-45 NN denotes activity
T20339 30-36 NN denotes ligase
T20338 20-29 NN denotes ubiquitin
T20337 17-19 DT denotes no
T20336 13-16 VBZ denotes has
T20335 7-12 WDT denotes which
T20334 5-6 , denotes ,
T20333 0-5 CD denotes TRAF1
R13449 T20333 T20344 dep TRAF1,regulate
R13450 T20334 T20333 punct ",",TRAF1
R13451 T20335 T20336 nsubj which,has
R13452 T20336 T20333 relcl has,TRAF1
R13453 T20337 T20340 det no,activity
R13454 T20338 T20340 compound ubiquitin,activity
R13455 T20339 T20340 compound ligase,activity
R13456 T20340 T20336 dobj activity,has
R13457 T20341 T20344 punct ",",regulate
R13458 T20342 T20344 aux can,regulate
R13459 T20343 T20344 advmod negatively,regulate
R13460 T20344 T20344 ROOT regulate,regulate
R13461 T20345 T20346 amod NF-κB,activation
R13462 T20346 T20344 dobj activation,regulate
R13463 T20347 T20344 punct ",",regulate
R13464 T20348 T20349 advmod most,probably
R13465 T20349 T20350 advmod probably,by
R13466 T20350 T20344 prep by,regulate
R13467 T20351 T20350 pcomp competing,by
R13468 T20352 T20351 prep with,competing
R13469 T20353 T20354 amod other,TRAFs
R13470 T20354 T20352 pobj TRAFs,with
R13471 T20355 T20344 punct .,regulate

DLUT931

Id Subject Object Predicate Lexical cue
T20687 0-5 Protein denotes TRAF1

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T19611 0-5 Protein denotes TRAF1

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T19810 127-132 NN denotes TRAFs
T19809 121-126 JJ denotes other
T19808 116-120 IN denotes with
T19807 106-115 VB denotes competing
T19806 103-105 IN denotes by
T19805 94-102 RB denotes probably
T19804 89-93 RB denotes most
T19803 87-88 -COMMA- denotes ,
T19802 77-87 NN denotes activation
T19801 71-76 NN denotes NF-κB
T19800 62-70 VB denotes regulate
T19799 51-61 RB denotes negatively
T19798 47-50 MD denotes can
T19797 45-46 -COMMA- denotes ,
T19796 37-45 NN denotes activity
T19795 30-36 NN denotes ligase
T19794 20-29 NN denotes ubiquitin
T19793 17-19 DT denotes no
T19792 13-16 VB denotes has
T19791 7-12 WDT denotes which
T19790 5-6 -COMMA- denotes ,
T19789 0-5 NN denotes TRAF1
R13079 T19789 T19790 arg1Of TRAF1,","
R13080 T19789 T19791 arg1Of TRAF1,which
R13081 T19789 T19792 arg1Of TRAF1,has
R13082 T19789 T19798 arg1Of TRAF1,can
R13083 T19789 T19800 arg1Of TRAF1,regulate
R13084 T19789 T19807 arg1Of TRAF1,competing
R13085 T19796 T19792 arg2Of activity,has
R13086 T19796 T19793 arg1Of activity,no
R13087 T19796 T19794 arg1Of activity,ubiquitin
R13088 T19796 T19795 arg1Of activity,ligase
R13089 T19800 T19797 arg1Of regulate,","
R13090 T19800 T19798 arg2Of regulate,can
R13091 T19800 T19799 arg1Of regulate,negatively
R13092 T19800 T19803 arg1Of regulate,","
R13093 T19800 T19806 arg1Of regulate,by
R13094 T19802 T19800 arg2Of activation,regulate
R13095 T19802 T19801 arg1Of activation,NF-κB
R13096 T19805 T19804 arg1Of probably,most
R13097 T19806 T19805 arg1Of by,probably
R13098 T19807 T19806 arg2Of competing,by
R13099 T19807 T19808 arg1Of competing,with
R13100 T19810 T19808 arg2Of TRAFs,with
R13101 T19810 T19809 arg1Of TRAFs,other

GO-BP

Id Subject Object Predicate Lexical cue
T20022 71-87 http://purl.obolibrary.org/obo/GO_0051092 denotes NF-κB activation
T20021 30-45 http://purl.obolibrary.org/obo/GO_0016874 denotes ligase activity
T20020 20-45 http://purl.obolibrary.org/obo/GO_0034450 denotes ubiquitin ligase activity
T20019 20-45 http://purl.obolibrary.org/obo/GO_1904667 denotes ubiquitin ligase activity
T20018 20-45 http://purl.obolibrary.org/obo/GO_0061630 denotes ubiquitin ligase activity
T20017 20-45 http://purl.obolibrary.org/obo/GO_1904668 denotes ubiquitin ligase activity
T20016 20-45 http://purl.obolibrary.org/obo/GO_1990757 denotes ubiquitin ligase activity
T20015 20-45 http://purl.obolibrary.org/obo/GO_1904666 denotes ubiquitin ligase activity
T20014 20-45 http://purl.obolibrary.org/obo/GO_0050372 denotes ubiquitin ligase activity
T20013 20-45 http://purl.obolibrary.org/obo/GO_0004842 denotes ubiquitin ligase activity

GO-MF

Id Subject Object Predicate Lexical cue
T20055 30-45 http://purl.obolibrary.org/obo/GO_0016874 denotes ligase activity
T20054 20-45 http://purl.obolibrary.org/obo/GO_0034450 denotes ubiquitin ligase activity
T20053 20-45 http://purl.obolibrary.org/obo/GO_0061630 denotes ubiquitin ligase activity
T20052 20-45 http://purl.obolibrary.org/obo/GO_1990757 denotes ubiquitin ligase activity
T20051 20-45 http://purl.obolibrary.org/obo/GO_0050372 denotes ubiquitin ligase activity
T20050 20-45 http://purl.obolibrary.org/obo/GO_0004842 denotes ubiquitin ligase activity
T20048 20-29 http://purl.obolibrary.org/obo/GO_0031386 denotes ubiquitin

sentences

Id Subject Object Predicate Lexical cue
T19465 0-133 Sentence denotes TRAF1, which has no ubiquitin ligase activity, can negatively regulate NF-κB activation, most probably by competing with other TRAFs.
T51 0-133 Sentence denotes TRAF1, which has no ubiquitin ligase activity, can negatively regulate NF-κB activation, most probably by competing with other TRAFs.

simple1

Id Subject Object Predicate Lexical cue
T20150 0-5 Protein denotes TRAF1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T21027 0-5 Protein denotes TRAF1

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T20617 0-5 Protein denotes TRAF1

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T21180 71-88 Positive_regulation denotes NF-κB activation,
T21177 47-132 Regulation denotes can negatively regulate NF-κB activation, most probably by competing with other TRAFs
T21146 17-36 Protein denotes no ubiquitin ligase
T21106 71-76 Protein denotes NF-κB
T21095 116-132 Protein denotes with other TRAFs
T21093 20-29 Protein denotes ubiquitin
T21086 0-46 Protein denotes TRAF1, which has no ubiquitin ligase activity,
R13890 T21106 T21180 themeOf NF-κB,"NF-κB activation,"
R13903 T21180 T21177 themeOf "NF-κB activation,","can negatively regulate NF-κB activation, most probably by competing with other TRAFs"

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T20840 62-70 Regulation denotes regulate
T20839 106-115 Binding denotes competing
T20838 77-87 Positive_regulation denotes activation
T20837 127-132 Protein denotes TRAFs
T20836 71-76 Protein denotes NF-κB
T20835 20-36 Protein denotes ubiquitin ligase
T20834 0-5 Protein denotes TRAF1
R13773 T20836 T20838 themeOf NF-κB,activation
R13774 T20837 T20839 themeOf TRAFs,competing
R13775 T20838 T20840 themeOf activation,regulate
R13776 T20839 T20840 causeOf competing,regulate

test3

Id Subject Object Predicate Lexical cue
T19424 0-5 Protein denotes TRAF1
T19359 0-5 Protein denotes TRAF1