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PMC:3218875 / 8950-9120 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T19281 165-169 Protein denotes TAK1
T19280 156-160 Protein denotes IKK2
T19279 73-77 Protein denotes NEMO
T19278 49-54 Protein denotes IRAK1
T19277 40-44 Protein denotes RIP1

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T20286 169-170 . denotes .
T20285 165-169 CD denotes TAK1
T20284 161-164 CC denotes and
T20283 156-160 CD denotes IKK2
T20282 143-155 RB denotes respectively
T20281 140-142 IN denotes of
T20280 129-139 NN denotes activation
T20279 125-128 CC denotes and
T20278 113-124 NN denotes recruitment
T20277 109-112 DT denotes the
T20276 106-108 IN denotes in
T20275 96-105 VBG denotes resulting
T20274 94-95 , denotes ,
T20273 86-94 NNS denotes proteins
T20272 82-85 NNP denotes TAB
T20271 78-81 CC denotes and
T20270 73-77 NNP denotes NEMO
T20269 70-72 IN denotes by
T20268 59-69 VBN denotes recognised
T20267 56-58 VBZ denotes is
T20266 54-55 , denotes ,
T20265 49-54 NNP denotes IRAK1
T20264 45-48 CC denotes and
T20263 40-44 NNP denotes RIP1
T20262 38-39 , denotes ,
T20261 33-38 NNP denotes TRAFs
T20260 30-32 IN denotes of
T20259 11-29 NN denotes polyubiquitination
T20258 0-10 JJ denotes K63-linked
R13374 T20258 T20259 amod K63-linked,polyubiquitination
R13375 T20259 T20268 nsubjpass polyubiquitination,recognised
R13380 T20264 T20263 cc and,RIP1
R13381 T20265 T20263 conj IRAK1,RIP1
R13382 T20266 T20268 punct ",",recognised
R13383 T20267 T20268 auxpass is,recognised
R13384 T20268 T20268 ROOT recognised,recognised
R13385 T20269 T20268 agent by,recognised
R13386 T20270 T20269 pobj NEMO,by
R13387 T20271 T20270 cc and,NEMO
R13388 T20272 T20270 conj TAB,NEMO
R13389 T20273 T20268 advcl proteins,recognised
R13390 T20274 T20268 punct ",",recognised
R13391 T20275 T20268 advcl resulting,recognised
R13392 T20276 T20275 prep in,resulting
R13393 T20277 T20278 det the,recruitment
R13394 T20278 T20276 pobj recruitment,in
R13395 T20279 T20278 cc and,recruitment
R13396 T20280 T20278 conj activation,recruitment
R13397 T20281 T20278 prep of,recruitment
R13398 T20282 T20283 advmod respectively,IKK2
R13399 T20283 T20275 npadvmod IKK2,resulting
R13400 T20284 T20283 cc and,IKK2
R13401 T20285 T20283 conj TAK1,IKK2
R13402 T20286 T20268 punct .,recognised
R13376 T20260 T20259 prep of,polyubiquitination
R13377 T20261 T20260 pobj TRAFs,of
R13378 T20262 T20261 punct ",",TRAFs
R13379 T20263 T20261 conj RIP1,TRAFs

DLUT931

Id Subject Object Predicate Lexical cue
T20718 129-139 Positive_regulation denotes activation
T20717 113-124 Binding denotes recruitment
T20716 11-29 Ubiquitination denotes polyubiquitination
T20681 165-169 Protein denotes TAK1
T20680 156-160 Protein denotes IKK2
T20679 73-77 Protein denotes NEMO
T20678 49-54 Protein denotes IRAK1
T20677 40-44 Protein denotes RIP1
R13713 T20677 T20716 themeOf RIP1,polyubiquitination
R13714 T20678 T20716 themeOf IRAK1,polyubiquitination
R13715 T20680 T20717 themeOf IKK2,recruitment
R13716 T20681 T20717 themeOf TAK1,recruitment
R13735 T20717 T20718 themeOf recruitment,activation

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T20579 156-160 http://www.uniprot.org/uniprot/O14920 denotes IKK2
T20577 73-77 http://www.uniprot.org/uniprot/Q9Y6K9 denotes NEMO
T20568 40-44 http://www.uniprot.org/uniprot/Q13546 denotes RIP1

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T19605 165-169 Protein denotes TAK1
T19604 156-160 Protein denotes IKK2
T19603 73-77 Protein denotes NEMO
T19602 49-54 Protein denotes IRAK1
T19601 40-44 Protein denotes RIP1

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T19744 165-169 NN denotes TAK1
T19743 161-164 CC denotes and
T19742 156-160 NN denotes IKK2
T19741 143-155 RB denotes respectively
T19740 140-142 IN denotes of
T19739 129-139 NN denotes activation
T19738 125-128 CC denotes and
T19737 113-124 NN denotes recruitment
T19736 109-112 DT denotes the
T19735 106-108 IN denotes in
T19734 96-105 VB denotes resulting
T19733 94-95 -COMMA- denotes ,
T19732 86-94 NN denotes proteins
T19731 82-85 NN denotes TAB
T19730 78-81 CC denotes and
T19729 73-77 NN denotes NEMO
T19728 70-72 IN denotes by
T19727 59-69 VB denotes recognised
T19726 56-58 VB denotes is
T19725 54-55 -COMMA- denotes ,
T19724 49-54 NN denotes IRAK1
T19723 45-48 CC denotes and
T19722 40-44 NN denotes RIP1
T19721 38-39 -COMMA- denotes ,
T19720 33-38 NN denotes TRAFs
T19719 30-32 IN denotes of
T19718 11-29 NN denotes polyubiquitination
T19717 0-10 JJ denotes K63-linked
R13003 T19718 T19717 arg1Of polyubiquitination,K63-linked
R13004 T19718 T19719 arg1Of polyubiquitination,of
R13005 T19718 T19726 arg1Of polyubiquitination,is
R13006 T19718 T19727 arg2Of polyubiquitination,recognised
R13007 T19720 T19719 arg2Of TRAFs,of
R13008 T19720 T19721 arg1Of TRAFs,","
R13009 T19722 T19723 arg1Of RIP1,and
R13010 T19723 T19721 arg2Of and,","
R13011 T19724 T19723 arg2Of IRAK1,and
R13012 T19727 T19725 arg1Of recognised,","
R13013 T19727 T19726 arg2Of recognised,is
R13014 T19727 T19733 arg1Of recognised,","
R13015 T19727 T19734 modOf recognised,resulting
R13016 T19729 T19730 arg1Of NEMO,and
R13017 T19731 T19730 arg2Of TAB,and
R13018 T19732 T19727 arg1Of proteins,recognised
R13019 T19732 T19728 arg2Of proteins,by
R13020 T19732 T19729 arg1Of proteins,NEMO
R13021 T19732 T19731 arg1Of proteins,TAB
R13022 T19734 T19735 arg1Of resulting,in
R13023 T19737 T19738 arg1Of recruitment,and
R13024 T19738 T19735 arg2Of and,in
R13025 T19738 T19736 arg1Of and,the
R13026 T19738 T19740 arg1Of and,of
R13027 T19739 T19738 arg2Of activation,and
R13028 T19742 T19743 arg1Of IKK2,and
R13029 T19743 T19740 arg2Of and,of
R13030 T19743 T19741 arg1Of and,respectively
R13031 T19744 T19743 arg2Of TAK1,and

sentences

Id Subject Object Predicate Lexical cue
T19462 0-170 Sentence denotes K63-linked polyubiquitination of TRAFs, RIP1 and IRAK1, is recognised by NEMO and TAB proteins, resulting in the recruitment and activation of respectively IKK2 and TAK1.
T48 0-170 Sentence denotes K63-linked polyubiquitination of TRAFs, RIP1 and IRAK1, is recognised by NEMO and TAB proteins, resulting in the recruitment and activation of respectively IKK2 and TAK1.

simple1

Id Subject Object Predicate Lexical cue
T20144 165-169 Protein denotes TAK1
T20143 156-160 Protein denotes IKK2
T20142 73-77 Protein denotes NEMO
T20141 49-54 Protein denotes IRAK1
T20140 40-44 Protein denotes RIP1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T21061 11-29 Binding denotes polyubiquitination
T21060 129-139 Positive_regulation denotes activation
T21059 113-124 Binding denotes recruitment
T21021 165-169 Protein denotes TAK1
T21020 156-160 Protein denotes IKK2
T21019 73-77 Protein denotes NEMO
T21018 49-54 Protein denotes IRAK1
T21017 40-44 Protein denotes RIP1
R13845 T21017 T21061 themeOf RIP1,polyubiquitination
R13846 T21018 T21061 themeOf IRAK1,polyubiquitination
R13847 T21020 T21059 themeOf IKK2,recruitment
R13848 T21021 T21059 themeOf TAK1,recruitment
R13849 T21021 T21060 themeOf TAK1,activation

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T20649 11-29 Positive_regulation denotes polyubiquitination
T20648 96-105 Positive_regulation denotes resulting
T20611 165-169 Protein denotes TAK1
T20610 156-160 Protein denotes IKK2
T20609 73-77 Protein denotes NEMO
T20608 49-54 Protein denotes IRAK1
T20607 40-44 Protein denotes RIP1
T20650 113-124 Binding denotes recruitment
R13689 T20607 T20649 themeOf RIP1,polyubiquitination
R13690 T20608 T20649 themeOf IRAK1,polyubiquitination
R13691 T20610 T20650 themeOf IKK2,recruitment
R13692 T20611 T20650 themeOf TAK1,recruitment
R13707 T20650 T20648 themeOf recruitment,resulting
R13708 T20650 T20648 themeOf recruitment,resulting

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T21183 0-55 Ubiquitination denotes K63-linked polyubiquitination of TRAFs, RIP1 and IRAK1,
T21182 0-55 Ubiquitination denotes K63-linked polyubiquitination of TRAFs, RIP1 and IRAK1,
T21181 0-55 Ubiquitination denotes K63-linked polyubiquitination of TRAFs, RIP1 and IRAK1,
T21166 165-169 Protein denotes TAK1
T21161 73-77 Protein denotes NEMO
T21149 156-160 Protein denotes IKK2
T21148 0-10 Entity denotes K63-linked
T21141 49-54 Protein denotes IRAK1
T21088 40-44 Protein denotes RIP1
T21081 86-94 Protein denotes proteins
T21072 33-38 Protein denotes TRAFs
R13883 T21072 T21183 themeOf TRAFs,"K63-linked polyubiquitination of TRAFs, RIP1 and IRAK1,"
R13887 T21088 T21181 themeOf RIP1,"K63-linked polyubiquitination of TRAFs, RIP1 and IRAK1,"
R13894 T21141 T21182 themeOf IRAK1,"K63-linked polyubiquitination of TRAFs, RIP1 and IRAK1,"

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T20819 113-124 Binding denotes recruitment
T20818 11-29 Localization denotes polyubiquitination
T20817 11-29 Localization denotes polyubiquitination
T20816 165-169 Protein denotes TAK1
T20815 156-160 Protein denotes IKK2
T20814 82-94 Protein denotes TAB proteins
T20813 73-77 Protein denotes NEMO
T20812 49-54 Protein denotes IRAK1
T20811 40-44 Protein denotes RIP1
T20810 33-38 Protein denotes TRAFs
R13760 T20811 T20817 themeOf RIP1,polyubiquitination
R13761 T20812 T20818 themeOf IRAK1,polyubiquitination
R13762 T20812 T20819 themeOf IRAK1,recruitment
R13763 T20816 T20819 themeOf TAK1,recruitment

test3

Id Subject Object Predicate Lexical cue
T19414 165-169 Protein denotes TAK1
T19413 156-160 Protein denotes IKK2
T19412 113-124 Binding denotes recruitment
T19411 96-105 Positive_regulation denotes resulting
T19410 73-77 Protein denotes NEMO
T19409 49-54 Protein denotes IRAK1
T19408 40-44 Protein denotes RIP1
T19353 165-169 Protein denotes TAK1
T19352 156-160 Protein denotes IKK2
T19351 73-77 Protein denotes NEMO
T19350 49-54 Protein denotes IRAK1
T19349 40-44 Protein denotes RIP1
R12816 T19408 T19412 themeOf RIP1,recruitment
R12817 T19409 T19412 themeOf IRAK1,recruitment
R12818 T19410 T19412 themeOf NEMO,recruitment
R12819 T19412 T19411 themeOf recruitment,resulting
R12820 T19413 T19412 themeOf IKK2,recruitment
R12821 T19414 T19412 themeOf TAK1,recruitment