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PMC:3218875 / 687-1419 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T947 731-732 . denotes .
T946 727-731 NN denotes bone
T945 715-726 JJ denotes subchondral
T944 711-714 CC denotes and
T943 701-710 NN denotes cartilage
T942 691-700 JJ denotes articular
T941 682-690 VBZ denotes degrades
T940 678-681 CC denotes and
T939 670-677 VBZ denotes invades
T938 664-669 WDT denotes which
T937 662-663 , denotes ,
T936 656-662 NN denotes tissue
T935 649-655 NN denotes pannus
T934 646-648 IN denotes of
T933 636-645 NN denotes formation
T932 632-635 DT denotes the
T931 629-631 TO denotes to
T883 306-316 NN denotes disability
T882 302-305 CC denotes and
T881 294-301 NN denotes decline
T880 283-293 JJ denotes functional
T879 280-282 TO denotes to
T878 272-279 VBG denotes leading
T877 270-271 , denotes ,
T876 266-270 NN denotes bone
T875 262-265 CC denotes and
T874 252-261 NN denotes cartilage
T873 249-251 IN denotes of
T872 237-248 NN denotes destruction
T871 225-236 JJ denotes progressive
T870 223-224 DT denotes a
T869 218-222 IN denotes with
T868 207-217 VBN denotes associated
T867 204-206 VBZ denotes is
T833 11-20 NNS denotes arthritis
T832 0-10 JJ denotes Rheumatoid
T843 67-68 , denotes ,
T842 58-67 NNS denotes arthritis
T841 45-57 JJ denotes inflammatory
T866 197-203 NNS denotes joints
T865 194-196 IN denotes of
T864 181-193 NN denotes inflammation
T863 173-180 JJ denotes chronic
T862 167-172 WDT denotes which
T861 164-166 IN denotes in
T860 150-163 NN denotes polyarthritis
T859 138-149 JJ denotes symmetrical
T858 136-137 DT denotes a
T857 133-135 IN denotes by
T856 119-132 VBN denotes characterised
T855 116-118 VBZ denotes is
T854 113-115 NNP denotes RA
T853 111-112 . denotes .
T852 101-111 NN denotes population
T851 95-100 NN denotes adult
T850 91-94 DT denotes the
T849 88-90 IN denotes of
T848 86-87 NN denotes %
T847 85-86 CD denotes 1
T846 82-84 TO denotes to
T845 79-81 RP denotes up
T844 69-78 VBG denotes affecting
T840 38-44 JJ denotes common
T839 33-37 RBS denotes most
T838 29-32 DT denotes the
T837 26-28 VBZ denotes is
T836 24-25 -RRB- denotes )
T835 22-24 NNP denotes RA
T834 21-22 -LRB- denotes (
T930 623-628 VBZ denotes leads
T929 611-622 NNS denotes fibroblasts
T928 602-610 JJ denotes synovial
T927 599-601 IN denotes of
T926 585-598 NNP denotes Proliferation
T925 583-584 . denotes .
T924 578-583 NNS denotes cells
T923 569-577 JJ denotes synovial
T922 565-568 CC denotes and
T921 555-564 NNS denotes monocytes
T920 542-554 VBG denotes infiltrating
T919 539-541 IN denotes by
T918 520-538 NNS denotes metalloproteinases
T917 513-519 NN denotes matrix
T908 465-468 CC denotes and
T907 463-464 CD denotes 1
T906 458-462 NN denotes type
T905 449-457 NN denotes T-helper
T904 433-448 JJ denotes proinflammatory
T903 430-432 IN denotes of
T902 419-429 NN denotes production
T901 413-418 JJ denotes local
T900 409-412 DT denotes the
T899 402-408 VBZ denotes drives
T898 396-401 NN denotes space
T897 390-395 JJ denotes joint
T896 386-389 DT denotes the
T895 381-385 IN denotes into
T894 374-380 NN denotes system
T893 367-373 JJ denotes immune
T892 358-366 JJ denotes adaptive
T891 354-357 CC denotes and
T890 347-353 NN denotes innate
T889 343-346 DT denotes the
T888 340-342 IN denotes of
T887 334-339 NNS denotes cells
T886 331-333 IN denotes of
T885 318-330 NNP denotes Infiltration
T884 316-317 . denotes .
T916 509-512 CC denotes and
T915 507-508 , denotes ,
T914 497-507 NNS denotes chemokines
T913 495-496 , denotes ,
T912 486-495 NNS denotes cytokines
T911 483-485 CD denotes 17
T910 478-482 NN denotes type
T909 469-477 NNP denotes T-helper
R642 T832 T833 amod Rheumatoid,arthritis
R643 T833 T837 nsubj arthritis,is
R644 T834 T833 punct (,arthritis
R645 T835 T833 appos RA,arthritis
R646 T836 T833 punct ),arthritis
R647 T837 T837 ROOT is,is
R648 T838 T842 det the,arthritis
R649 T839 T840 advmod most,common
R650 T840 T842 amod common,arthritis
R651 T841 T842 amod inflammatory,arthritis
R652 T842 T837 attr arthritis,is
R653 T843 T837 punct ",",is
R654 T844 T837 advcl affecting,is
R655 T845 T847 quantmod up,1
R656 T846 T847 quantmod to,1
R657 T847 T848 nummod 1,%
R658 T848 T844 dobj %,affecting
R659 T849 T848 prep of,%
R660 T850 T852 det the,population
R661 T851 T852 compound adult,population
R662 T852 T849 pobj population,of
R663 T853 T837 punct .,is
R664 T854 T856 nsubjpass RA,characterised
R665 T855 T856 auxpass is,characterised
R666 T856 T856 ROOT characterised,characterised
R667 T857 T856 agent by,characterised
R668 T858 T860 det a,polyarthritis
R669 T859 T860 amod symmetrical,polyarthritis
R670 T860 T857 pobj polyarthritis,by
R671 T861 T868 prep in,associated
R672 T862 T861 pobj which,in
R673 T863 T864 amod chronic,inflammation
R674 T864 T868 nsubjpass inflammation,associated
R675 T865 T864 prep of,inflammation
R676 T866 T865 pobj joints,of
R677 T867 T868 auxpass is,associated
R678 T868 T860 relcl associated,polyarthritis
R679 T869 T868 prep with,associated
R680 T870 T872 det a,destruction
R681 T871 T872 amod progressive,destruction
R682 T872 T869 pobj destruction,with
R683 T873 T872 prep of,destruction
R684 T874 T873 pobj cartilage,of
R685 T875 T874 cc and,cartilage
R686 T876 T874 conj bone,cartilage
R687 T877 T872 punct ",",destruction
R688 T878 T872 acl leading,destruction
R689 T879 T878 prep to,leading
R690 T880 T881 amod functional,decline
R691 T881 T879 pobj decline,to
R692 T882 T881 cc and,decline
R693 T883 T881 conj disability,decline
R694 T884 T856 punct .,characterised
R695 T885 T899 nsubj Infiltration,drives
R696 T886 T885 prep of,Infiltration
R697 T887 T886 pobj cells,of
R698 T888 T887 prep of,cells
R699 T889 T894 det the,system
R700 T890 T894 amod innate,system
R701 T891 T890 cc and,innate
R702 T892 T890 conj adaptive,innate
R703 T893 T894 amod immune,system
R704 T894 T888 pobj system,of
R705 T895 T885 prep into,Infiltration
R706 T896 T898 det the,space
R707 T897 T898 amod joint,space
R708 T898 T899 nsubj space,drives
R709 T899 T899 ROOT drives,drives
R710 T900 T902 det the,production
R711 T901 T902 amod local,production
R712 T902 T899 dobj production,drives
R713 T903 T902 prep of,production
R714 T904 T906 amod proinflammatory,type
R715 T905 T906 compound T-helper,type
R716 T906 T903 pobj type,of
R717 T907 T906 nummod 1,type
R718 T908 T906 cc and,type
R719 T909 T910 compound T-helper,type
R720 T910 T906 conj type,type
R721 T911 T912 nummod 17,cytokines
R722 T912 T906 appos cytokines,type
R723 T913 T912 punct ",",cytokines
R724 T914 T912 conj chemokines,cytokines
R725 T915 T914 punct ",",chemokines
R726 T916 T914 cc and,chemokines
R727 T917 T918 compound matrix,metalloproteinases
R728 T918 T914 conj metalloproteinases,chemokines
R729 T919 T899 prep by,drives
R730 T920 T919 pcomp infiltrating,by
R731 T921 T920 dobj monocytes,infiltrating
R732 T922 T921 cc and,monocytes
R733 T923 T924 amod synovial,cells
R734 T924 T921 conj cells,monocytes
R735 T925 T899 punct .,drives
R736 T926 T930 nsubj Proliferation,leads
R737 T927 T926 prep of,Proliferation
R738 T928 T929 amod synovial,fibroblasts
R739 T929 T927 pobj fibroblasts,of
R740 T930 T930 ROOT leads,leads
R741 T931 T930 prep to,leads
R742 T932 T933 det the,formation
R743 T933 T931 pobj formation,to
R744 T934 T933 prep of,formation
R745 T935 T936 amod pannus,tissue
R746 T936 T934 pobj tissue,of
R747 T937 T936 punct ",",tissue
R748 T938 T939 nsubj which,invades
R749 T939 T936 relcl invades,tissue
R750 T940 T939 cc and,invades
R751 T941 T939 conj degrades,invades
R752 T942 T943 amod articular,cartilage
R753 T943 T941 dobj cartilage,degrades
R754 T944 T943 cc and,cartilage
R755 T945 T946 amod subchondral,bone
R756 T946 T943 conj bone,cartilage
R757 T947 T930 punct .,leads

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T485 727-731 NN denotes bone
T484 715-726 JJ denotes subchondral
T483 711-714 CC denotes and
T482 701-710 NN denotes cartilage
T481 691-700 JJ denotes articular
T480 682-690 VB denotes degrades
T479 678-681 CC denotes and
T478 670-677 VB denotes invades
T477 664-669 WDT denotes which
T476 662-663 -COMMA- denotes ,
T475 656-662 NN denotes tissue
T474 649-655 NN denotes pannus
T473 646-648 IN denotes of
T472 636-645 NN denotes formation
T471 632-635 DT denotes the
T470 629-631 TO denotes to
T469 623-628 VB denotes leads
T468 611-622 NN denotes fibroblasts
T467 602-610 JJ denotes synovial
T466 599-601 IN denotes of
T465 585-598 NN denotes Proliferation
T464 578-583 NN denotes cells
T463 569-577 JJ denotes synovial
T462 565-568 CC denotes and
T461 555-564 NN denotes monocytes
T460 542-554 VB denotes infiltrating
T459 539-541 IN denotes by
T458 520-538 NN denotes metalloproteinases
T457 513-519 NN denotes matrix
T456 509-512 CC denotes and
T455 507-508 -COMMA- denotes ,
T454 497-507 NN denotes chemokines
T453 495-496 -COMMA- denotes ,
T440 409-412 DT denotes the
T439 402-408 VB denotes drives
T438 396-401 NN denotes space
T437 390-395 JJ denotes joint
T436 386-389 DT denotes the
T435 381-385 IN denotes into
T434 374-380 NN denotes system
T433 367-373 JJ denotes immune
T432 358-366 JJ denotes adaptive
T431 354-357 CC denotes and
T430 347-353 JJ denotes innate
T429 343-346 DT denotes the
T428 340-342 IN denotes of
T427 334-339 NN denotes cells
T426 331-333 IN denotes of
T425 318-330 NN denotes Infiltration
T424 306-316 NN denotes disability
T423 302-305 CC denotes and
T422 294-301 NN denotes decline
T421 283-293 JJ denotes functional
T452 486-495 NN denotes cytokines
T451 483-485 CD denotes 17
T450 478-482 NN denotes type
T449 469-477 NN denotes T-helper
T448 465-468 CC denotes and
T447 463-464 CD denotes 1
T446 458-462 NN denotes type
T445 449-457 NN denotes T-helper
T444 433-448 JJ denotes proinflammatory
T443 430-432 IN denotes of
T442 419-429 NN denotes production
T441 413-418 JJ denotes local
T390 86-87 NN denotes %
T389 85-86 CD denotes 1
T388 82-84 TO denotes to
T387 79-81 IN denotes up
T386 69-78 VB denotes affecting
T385 67-68 -COMMA- denotes ,
T384 58-67 NN denotes arthritis
T383 45-57 JJ denotes inflammatory
T420 280-282 TO denotes to
T419 272-279 VB denotes leading
T418 270-271 -COMMA- denotes ,
T417 266-270 NN denotes bone
T416 262-265 CC denotes and
T415 252-261 NN denotes cartilage
T414 249-251 IN denotes of
T413 237-248 NN denotes destruction
T412 225-236 JJ denotes progressive
T411 223-224 DT denotes a
T410 218-222 IN denotes with
T409 207-217 VB denotes associated
T408 204-206 VB denotes is
T407 197-203 NN denotes joints
T406 194-196 IN denotes of
T405 181-193 NN denotes inflammation
T404 173-180 JJ denotes chronic
T403 167-172 WDT denotes which
T402 164-166 IN denotes in
T401 150-163 NN denotes polyarthritis
T400 138-149 JJ denotes symmetrical
T399 136-137 DT denotes a
T398 133-135 IN denotes by
T397 119-132 VB denotes characterised
T396 116-118 VB denotes is
T395 113-115 NN denotes RA
T394 101-111 NN denotes population
T393 95-100 JJ denotes adult
T392 91-94 DT denotes the
T391 88-90 IN denotes of
T382 38-44 JJ denotes common
T381 33-37 RB denotes most
T380 29-32 DT denotes the
T379 26-28 VB denotes is
T378 24-25 -RRB- denotes )
T377 22-24 NN denotes RA
T376 21-22 -LRB- denotes (
T375 11-20 NN denotes arthritis
T374 0-10 JJ denotes Rheumatoid
R243 T384 T380 arg1Of arthritis,the
R244 T384 T382 arg1Of arthritis,common
R245 T384 T383 arg1Of arthritis,inflammatory
R246 T389 T387 arg1Of 1,up
R247 T389 T388 arg1Of 1,to
R248 T390 T386 arg2Of %,affecting
R249 T390 T389 arg1Of %,1
R250 T390 T391 arg1Of %,of
R251 T394 T391 arg2Of population,of
R252 T394 T392 arg1Of population,the
R253 T394 T393 arg1Of population,adult
R254 T395 T396 arg1Of RA,is
R255 T395 T397 arg2Of RA,characterised
R256 T397 T396 arg2Of characterised,is
R257 T401 T397 arg1Of polyarthritis,characterised
R258 T401 T398 arg2Of polyarthritis,by
R259 T401 T399 arg1Of polyarthritis,a
R260 T401 T400 arg1Of polyarthritis,symmetrical
R261 T401 T402 arg2Of polyarthritis,in
R262 T401 T403 arg1Of polyarthritis,which
R263 T405 T404 arg1Of inflammation,chronic
R264 T405 T406 arg1Of inflammation,of
R265 T405 T408 arg1Of inflammation,is
R266 T405 T409 arg2Of inflammation,associated
R267 T407 T406 arg2Of joints,of
R268 T409 T402 arg1Of associated,in
R269 T409 T408 arg2Of associated,is
R270 T409 T410 arg1Of associated,with
R271 T409 T418 arg1Of associated,","
R272 T409 T419 modOf associated,leading
R273 T413 T410 arg2Of destruction,with
R274 T413 T411 arg1Of destruction,a
R275 T413 T412 arg1Of destruction,progressive
R276 T413 T414 arg1Of destruction,of
R277 T415 T416 arg1Of cartilage,and
R278 T416 T414 arg2Of and,of
R279 T417 T416 arg2Of bone,and
R280 T419 T420 arg1Of leading,to
R281 T422 T423 arg1Of decline,and
R282 T423 T420 arg2Of and,to
R283 T423 T421 arg1Of and,functional
R284 T424 T423 arg2Of disability,and
R285 T425 T426 arg1Of Infiltration,of
R286 T425 T435 arg1Of Infiltration,into
R287 T425 T439 arg1Of Infiltration,drives
R288 T425 T460 arg1Of Infiltration,infiltrating
R289 T427 T426 arg2Of cells,of
R290 T427 T428 arg1Of cells,of
R291 T430 T431 arg1Of innate,and
R292 T432 T431 arg2Of adaptive,and
R293 T434 T428 arg2Of system,of
R294 T434 T429 arg1Of system,the
R295 T434 T430 arg1Of system,innate
R296 T434 T432 arg1Of system,adaptive
R297 T434 T433 arg1Of system,immune
R298 T438 T435 arg2Of space,into
R299 T438 T436 arg1Of space,the
R300 T438 T437 arg1Of space,joint
R301 T439 T459 arg1Of drives,by
R302 T442 T439 arg2Of production,drives
R303 T442 T440 arg1Of production,the
R304 T442 T441 arg1Of production,local
R305 T442 T443 arg1Of production,of
R306 T447 T448 arg1Of 1,and
R307 T449 T448 arg2Of T-helper,and
R308 T452 T444 arg1Of cytokines,proinflammatory
R309 T452 T445 arg1Of cytokines,T-helper
R310 T452 T446 arg1Of cytokines,type
R311 T452 T447 arg1Of cytokines,1
R312 T452 T449 arg1Of cytokines,T-helper
R313 T452 T450 arg1Of cytokines,type
R314 T452 T451 arg1Of cytokines,17
R315 T452 T453 arg1Of cytokines,","
R316 T453 T456 arg1Of ",",and
R317 T454 T453 arg2Of chemokines,","
R318 T456 T443 arg2Of and,of
R319 T456 T455 arg1Of and,","
R320 T458 T456 arg2Of metalloproteinases,and
R321 T458 T457 arg1Of metalloproteinases,matrix
R322 T460 T459 arg2Of infiltrating,by
R323 T461 T462 arg1Of monocytes,and
R324 T462 T460 arg2Of and,infiltrating
R325 T464 T462 arg2Of cells,and
R326 T464 T463 arg1Of cells,synovial
R327 T465 T466 arg1Of Proliferation,of
R328 T465 T469 arg1Of Proliferation,leads
R329 T468 T466 arg2Of fibroblasts,of
R330 T468 T467 arg1Of fibroblasts,synovial
R331 T469 T470 arg1Of leads,to
R332 T472 T470 arg2Of formation,to
R333 T472 T471 arg1Of formation,the
R334 T472 T473 arg1Of formation,of
R335 T475 T473 arg2Of tissue,of
R336 T475 T474 arg1Of tissue,pannus
R337 T475 T476 arg1Of tissue,","
R338 T475 T477 arg1Of tissue,which
R339 T475 T478 arg1Of tissue,invades
R340 T475 T480 arg1Of tissue,degrades
R341 T478 T479 arg1Of invades,and
R342 T480 T479 arg2Of degrades,and
R343 T482 T481 arg1Of cartilage,articular
R344 T482 T483 arg1Of cartilage,and
R345 T483 T478 arg2Of and,invades
R346 T483 T480 arg2Of and,degrades
R347 T485 T483 arg2Of bone,and
R348 T485 T484 arg1Of bone,subchondral
R233 T375 T374 arg1Of arthritis,Rheumatoid
R234 T375 T376 arg1Of arthritis,(
R235 T375 T379 arg1Of arthritis,is
R236 T375 T386 arg1Of arthritis,affecting
R237 T377 T376 arg2Of RA,(
R238 T378 T376 arg3Of ),(
R239 T379 T385 arg1Of is,","
R240 T379 T386 modOf is,affecting
R241 T382 T381 arg1Of common,most
R242 T384 T379 arg2Of arthritis,is

UBERON-AE

Id Subject Object Predicate Lexical cue
T322 656-662 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue
T321 367-380 http://purl.obolibrary.org/obo/UBERON_0002405 denotes immune system

GO-BP

Id Subject Object Predicate Lexical cue
T780 682-690 http://purl.obolibrary.org/obo/GO_0009056 denotes degrades
T779 636-645 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T778 578-598 http://purl.obolibrary.org/obo/GO_0008283 denotes cells. Proliferation
T777 181-193 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation

GO-CC

Id Subject Object Predicate Lexical cue
T812 578-583 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T811 334-339 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T327 585-732 Sentence denotes Proliferation of synovial fibroblasts leads to the formation of pannus tissue, which invades and degrades articular cartilage and subchondral bone.
T326 318-584 Sentence denotes Infiltration of cells of the innate and adaptive immune system into the joint space drives the local production of proinflammatory T-helper type 1 and T-helper type 17 cytokines, chemokines, and matrix metalloproteinases by infiltrating monocytes and synovial cells.
T325 113-317 Sentence denotes RA is characterised by a symmetrical polyarthritis in which chronic inflammation of joints is associated with a progressive destruction of cartilage and bone, leading to functional decline and disability.
T324 0-112 Sentence denotes Rheumatoid arthritis (RA) is the most common inflammatory arthritis, affecting up to 1% of the adult population.
T7 0-112 Sentence denotes Rheumatoid arthritis (RA) is the most common inflammatory arthritis, affecting up to 1% of the adult population.
T8 113-317 Sentence denotes RA is characterised by a symmetrical polyarthritis in which chronic inflammation of joints is associated with a progressive destruction of cartilage and bone, leading to functional decline and disability.
T9 318-584 Sentence denotes Infiltration of cells of the innate and adaptive immune system into the joint space drives the local production of proinflammatory T-helper type 1 and T-helper type 17 cytokines, chemokines, and matrix metalloproteinases by infiltrating monocytes and synovial cells.
T10 585-732 Sentence denotes Proliferation of synovial fibroblasts leads to the formation of pannus tissue, which invades and degrades articular cartilage and subchondral bone.

ICD10

Id Subject Object Predicate Lexical cue
T803 150-163 http://purl.bioontology.org/ontology/ICD10/M13.0 denotes polyarthritis
T801 58-67 http://purl.bioontology.org/ontology/ICD10/M13.9 denotes arthritis
T800 11-20 http://purl.bioontology.org/ontology/ICD10/M13.9 denotes arthritis
T799 0-20 http://purl.bioontology.org/ontology/ICD10/M06.9 denotes Rheumatoid arthritis

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T1588 542-583 Binding denotes infiltrating monocytes and synovial cells
T1581 513-538 Protein denotes matrix metalloproteinases
T1577 433-457 Entity denotes proinflammatory T-helper
T1574 555-564 Entity denotes monocytes
T1570 331-339 Entity denotes of cells
T1556 483-495 Protein denotes 17 cytokines
T1551 599-622 Entity denotes of synovial fibroblasts
T1549 497-508 Protein denotes chemokines,
T1545 22-24 Protein denotes RA
T1544 458-464 Protein denotes type 1
T1540 469-477 Entity denotes T-helper
T1537 569-583 Entity denotes synovial cells