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PMC:3218875 / 5880-6985 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T1679 267-276 Positive_regulation denotes increased
T1678 152-160 Localization denotes released
T1677 115-123 Localization denotes secreted
T1669 879-889 Protein denotes tenascin C
T1668 869-877 Protein denotes biglycan
T1667 856-867 Protein denotes fibronectin
T1666 685-689 Protein denotes TLR4
T1665 461-487 Protein denotes myeloid-related protein 14
T1664 431-456 Protein denotes Myeloid-related protein 8
T1663 368-373 Protein denotes HMGB1
T1662 303-308 Protein denotes HMGB1
T1661 258-263 Protein denotes HMGB1
T1660 219-231 Protein denotes TLR4 ligands
T1659 74-93 Protein denotes chromatin component
T1658 47-52 Protein denotes HMGB1
T1657 0-45 Protein denotes High mobility group box chromosomal protein 1
R1275 T1657 T1659 themeOf High mobility group box chromosomal protein 1,chromatin component
R1276 T1657 T1678 themeOf High mobility group box chromosomal protein 1,released
R1277 T1657 T1677 themeOf High mobility group box chromosomal protein 1,secreted
R1278 T1658 T1657 equivalentTo HMGB1,High mobility group box chromosomal protein 1
R1279 T1659 T1677 themeOf chromatin component,secreted
R1280 T1661 T1679 themeOf HMGB1,increased

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3270 1104-1105 . denotes .
T3269 1102-1104 NNP denotes RA
T3268 1099-1101 IN denotes in
T3267 1088-1098 NN denotes expression
T3266 1083-1087 NN denotes gene
T3265 1070-1082 JJ denotes inflammatory
T3264 1066-1069 CC denotes and
T3263 1055-1065 NN denotes activation
T3262 1049-1054 JJ denotes NF-κB
T3261 1046-1048 TO denotes to
T3260 1035-1045 VB denotes contribute
T3259 1031-1034 MD denotes may
T3258 1024-1030 NN denotes tissue
T3257 1018-1023 JJ denotes joint
T3256 1009-1017 JJ denotes inflamed
T3255 1005-1008 DT denotes the
T3254 1002-1004 IN denotes in
T3253 994-1001 NNS denotes ligands
T3252 990-993 NNP denotes TLR
T3251 982-989 JJ denotes several
T3250 977-981 IN denotes that
T3249 969-976 VBP denotes suggest
T3248 961-968 NNS denotes studies
T3247 955-960 DT denotes these
T3246 953-954 , denotes ,
T3245 945-953 RB denotes Together
T3244 943-944 . denotes .
T3243 942-943 -RRB- denotes )
T3242 941-942 NNP denotes ]
T3241 936-941 CD denotes 14,15
T3240 935-936 NNP denotes [
T3239 932-934 IN denotes in
T3238 923-931 VBN denotes reviewed
T3237 922-923 -LRB- denotes (
T3236 912-921 NNS denotes fragments
T3235 907-911 NN denotes acid
T3234 895-906 JJ denotes hyal-uronic
T3233 891-894 CC denotes and
T3232 889-890 , denotes ,
T3231 888-889 NNP denotes C
T3230 879-887 NN denotes tenascin
T3229 877-878 , denotes ,
T3228 869-877 NN denotes biglycan
T3227 867-868 , denotes ,
T3226 856-867 NN denotes fibronectin
T3225 854-855 , denotes ,
T3224 844-854 NN denotes fibrinogen
T3223 841-843 IN denotes as
T3222 836-840 JJ denotes such
T3221 825-835 NNS denotes components
T3220 818-824 NN denotes matrix
T3219 804-817 JJ denotes extracellular
T3218 800-803 VBP denotes are
T3217 790-799 NN denotes pathology
T3216 787-789 NNP denotes RA
T3215 784-786 IN denotes in
T3214 775-783 VBN denotes involved
T3213 772-774 VB denotes be
T3212 768-771 MD denotes may
T3211 763-767 WDT denotes that
T3210 755-762 NNS denotes ligands
T3209 751-754 NNP denotes TLR
T3208 740-750 JJ denotes endogenous
T3207 734-739 JJ denotes Other
T3206 732-733 . denotes .
T3205 731-732 NNP denotes ]
T3204 726-731 CD denotes 17,18
T3203 725-726 NNP denotes [
T3202 722-724 NNP denotes RA
T3201 719-721 IN denotes in
T3200 706-718 NN denotes inflammation
T3199 698-705 NN denotes chronic
T3198 685-697 JJ denotes TLR4-induced
T3197 682-684 IN denotes in
T3196 673-681 VBN denotes involved
T3195 670-672 VB denotes be
T3194 667-669 TO denotes to
T3193 657-666 VBN denotes suggested
T3192 652-656 VBN denotes been
T3191 647-651 VBP denotes have
T3190 643-646 CC denotes and
T3189 641-642 , denotes ,
T3188 636-641 NN denotes fluid
T3187 627-635 JJ denotes synovial
T3186 624-626 NNP denotes RA
T3185 621-623 IN denotes in
T3184 613-620 JJ denotes present
T3183 602-612 RB denotes abundantly
T3182 597-601 RB denotes also
T3181 593-596 VBP denotes are
T3180 591-592 , denotes ,
T3179 583-591 NNS denotes proteins
T3178 567-582 JJ denotes calcium-binding
T3177 564-566 IN denotes of
T3176 557-563 NN denotes family
T3175 552-556 NNP denotes S100
T3174 548-551 DT denotes the
T3173 545-547 TO denotes to
T3172 535-544 VBG denotes belonging
T3171 525-534 NNS denotes molecules
T3170 517-524 NN denotes pattern
T3169 507-516 JJ denotes molecular
T3168 489-506 JJ denotes damage-associated
T3167 487-488 , denotes ,
T3166 485-487 CD denotes 14
T3165 477-484 NN denotes protein
T3164 461-476 JJ denotes myeloid-related
T3163 457-460 CC denotes and
T3162 455-456 CD denotes 8
T3161 447-454 NN denotes protein
T3160 431-446 JJ denotes Myeloid-related
T3159 429-430 . denotes .
T3158 428-429 NNP denotes ]
T3157 426-428 CD denotes 16
T3156 425-426 NNP denotes [
T3155 420-424 NNS denotes mice
T3154 417-419 IN denotes in
T3153 407-416 NNS denotes arthritis
T3152 390-406 JJ denotes collagen-induced
T3151 382-389 IN denotes against
T3150 374-381 VBP denotes protect
T3149 368-373 NNP denotes HMGB1
T3148 365-367 IN denotes of
T3147 358-364 NN denotes domain
T3146 353-357 NNP denotes BoxA
T3145 340-352 JJ denotes antagonistic
T3144 336-339 DT denotes the
T3143 333-335 CC denotes or
T3142 322-332 NNS denotes antibodies
T3141 309-321 VBG denotes neutralising
T3140 303-308 NNP denotes HMGB1
T3139 299-302 CC denotes and
T3138 292-298 NN denotes tissue
T3137 283-291 JJ denotes synovial
T3136 280-282 NNP denotes RA
T3135 277-279 IN denotes in
T3134 267-276 VBN denotes increased
T3133 264-266 VBZ denotes is
T3132 258-263 CD denotes HMGB1
T3131 256-257 . denotes .
T3130 247-256 NN denotes pathology
T3129 244-246 NNP denotes RA
T3128 241-243 IN denotes in
T3119 183-186 CD denotes one
T3118 180-182 VBZ denotes is
T3117 178-179 , denotes ,
T3116 173-178 NNS denotes cells
T3115 164-172 JJ denotes necrotic
T3114 161-163 IN denotes by
T3113 152-160 VBN denotes released
T3112 142-151 RB denotes passively
T3111 139-141 CC denotes or
T3110 127-138 NNS denotes macrophages
T3109 124-126 IN denotes by
T3108 115-123 VBN denotes secreted
T3107 106-114 RB denotes actively
T3106 103-105 VB denotes be
T3105 99-102 MD denotes can
T3104 94-98 WDT denotes that
T3103 84-93 NN denotes component
T3102 74-83 NN denotes chromatin
T3101 64-73 VBN denotes conserved
T3100 57-63 RB denotes highly
T3099 55-56 DT denotes a
T3098 53-54 , denotes ,
T3097 52-53 -RRB- denotes )
T3096 47-52 CD denotes HMGB1
T3095 46-47 -LRB- denotes (
T3094 44-45 CD denotes 1
T3093 36-43 NN denotes protein
T3092 24-35 JJ denotes chromosomal
T3091 20-23 NN denotes box
T3090 14-19 NN denotes group
T3089 5-13 NN denotes mobility
T3088 0-4 NNP denotes High
T3127 232-240 VBN denotes involved
T3126 224-231 NNS denotes ligands
T3125 219-223 CD denotes TLR4
T3124 208-218 JJ denotes endogenous
T3123 199-207 JJ denotes putative
T3122 194-198 RBS denotes most
T3121 190-193 DT denotes the
T3120 187-189 IN denotes of
R2465 T3117 T3093 punct ",",protein
R2468 T3088 T3091 amod High,box
R2469 T3118 T3118 ROOT is,is
R2470 T3089 T3091 compound mobility,box
R2471 T3090 T3091 compound group,box
R2472 T3091 T3093 compound box,protein
R2473 T3092 T3093 compound chromosomal,protein
R2474 T3119 T3118 attr one,is
R2475 T3093 T3118 nsubj protein,is
R2476 T3094 T3093 nummod 1,protein
R2477 T3095 T3093 punct (,protein
R2478 T3096 T3093 appos HMGB1,protein
R2479 T3097 T3093 punct ),protein
R2480 T3098 T3093 punct ",",protein
R2481 T3120 T3119 prep of,one
R2482 T3099 T3103 det a,component
R2483 T3100 T3101 advmod highly,conserved
R2484 T3101 T3103 amod conserved,component
R2485 T3102 T3103 compound chromatin,component
R2486 T3121 T3126 det the,ligands
R2487 T3103 T3093 appos component,protein
R2488 T3104 T3108 nsubjpass that,secreted
R2489 T3122 T3123 advmod most,putative
R2490 T3105 T3108 aux can,secreted
R2491 T3106 T3108 auxpass be,secreted
R2492 T3107 T3108 advmod actively,secreted
R2493 T3123 T3126 amod putative,ligands
R2494 T3108 T3103 relcl secreted,component
R2495 T3109 T3108 agent by,secreted
R2496 T3110 T3109 pobj macrophages,by
R2497 T3124 T3126 amod endogenous,ligands
R2498 T3111 T3110 cc or,macrophages
R2499 T3112 T3113 advmod passively,released
R2500 T3113 T3110 acl released,macrophages
R2501 T3125 T3126 nummod TLR4,ligands
R2502 T3114 T3113 agent by,released
R2503 T3126 T3120 pobj ligands,of
R2504 T3127 T3126 acl involved,ligands
R2505 T3115 T3116 amod necrotic,cells
R2506 T3116 T3114 pobj cells,by
R2507 T3128 T3127 prep in,involved
R2508 T3129 T3130 compound RA,pathology
R2509 T3130 T3128 pobj pathology,in
R2510 T3131 T3118 punct .,is
R2511 T3132 T3134 nsubjpass HMGB1,increased
R2512 T3214 T3210 relcl involved,ligands
R2513 T3215 T3214 prep in,involved
R2514 T3133 T3134 auxpass is,increased
R2515 T3216 T3217 compound RA,pathology
R2516 T3217 T3215 pobj pathology,in
R2517 T3218 T3218 ROOT are,are
R2518 T3134 T3134 ROOT increased,increased
R2519 T3219 T3221 amod extracellular,components
R2520 T3220 T3221 compound matrix,components
R2521 T3135 T3134 prep in,increased
R2522 T3221 T3218 attr components,are
R2523 T3222 T3223 amod such,as
R2524 T3223 T3221 prep as,components
R2525 T3136 T3138 nmod RA,tissue
R2526 T3224 T3223 pobj fibrinogen,as
R2527 T3225 T3224 punct ",",fibrinogen
R2528 T3137 T3138 amod synovial,tissue
R2529 T3226 T3224 conj fibronectin,fibrinogen
R2530 T3227 T3226 punct ",",fibronectin
R2531 T3228 T3226 conj biglycan,fibronectin
R2532 T3138 T3135 pobj tissue,in
R2533 T3229 T3228 punct ",",biglycan
R2534 T3230 T3231 compound tenascin,C
R2535 T3231 T3228 conj C,biglycan
R2536 T3139 T3138 cc and,tissue
R2537 T3232 T3231 punct ",",C
R2538 T3233 T3231 cc and,C
R2539 T3234 T3236 amod hyal-uronic,fragments
R2540 T3140 T3141 nsubj HMGB1,neutralising
R2541 T3235 T3236 compound acid,fragments
R2542 T3236 T3231 conj fragments,C
R2543 T3237 T3236 punct (,fragments
R2544 T3141 T3138 conj neutralising,tissue
R2545 T3238 T3236 acl reviewed,fragments
R2546 T3239 T3238 prep in,reviewed
R2547 T3142 T3141 dobj antibodies,neutralising
R2548 T3240 T3239 pobj [,in
R2549 T3241 T3242 nummod "14,15",]
R2550 T3143 T3142 cc or,antibodies
R2551 T3242 T3240 appos ],[
R2552 T3243 T3240 punct ),[
R2553 T3244 T3218 punct .,are
R2554 T3144 T3147 det the,domain
R2555 T3245 T3249 advmod Together,suggest
R2556 T3246 T3249 punct ",",suggest
R2557 T3247 T3248 det these,studies
R2558 T3145 T3147 amod antagonistic,domain
R2559 T3248 T3249 nsubj studies,suggest
R2560 T3249 T3249 ROOT suggest,suggest
R2561 T3250 T3260 mark that,contribute
R2562 T3146 T3147 compound BoxA,domain
R2563 T3251 T3253 amod several,ligands
R2564 T3252 T3253 compound TLR,ligands
R2565 T3253 T3260 nsubj ligands,contribute
R2566 T3147 T3142 conj domain,antibodies
R2567 T3254 T3253 prep in,ligands
R2568 T3255 T3258 det the,tissue
R2569 T3256 T3258 amod inflamed,tissue
R2570 T3148 T3147 prep of,domain
R2571 T3257 T3258 amod joint,tissue
R2572 T3258 T3254 pobj tissue,in
R2573 T3259 T3260 aux may,contribute
R2574 T3149 T3148 pobj HMGB1,of
R2575 T3260 T3249 ccomp contribute,suggest
R2576 T3261 T3260 prep to,contribute
R2577 T3262 T3263 amod NF-κB,activation
R2578 T3263 T3261 pobj activation,to
R2579 T3264 T3263 cc and,activation
R2580 T3265 T3267 amod inflammatory,expression
R2581 T3150 T3134 conj protect,increased
R2582 T3266 T3267 compound gene,expression
R2583 T3267 T3263 conj expression,activation
R2584 T3268 T3263 prep in,activation
R2585 T3151 T3150 prep against,protect
R2586 T3269 T3268 pobj RA,in
R2587 T3270 T3249 punct .,suggest
R2588 T3152 T3153 amod collagen-induced,arthritis
R2589 T3153 T3151 pobj arthritis,against
R2590 T3154 T3153 prep in,arthritis
R2591 T3155 T3154 pobj mice,in
R2592 T3156 T3158 nmod [,]
R2593 T3157 T3158 nummod 16,]
R2594 T3158 T3158 ROOT ],]
R2595 T3159 T3134 punct .,increased
R2596 T3160 T3161 amod Myeloid-related,protein
R2597 T3161 T3181 nsubj protein,are
R2598 T3162 T3161 nummod 8,protein
R2599 T3163 T3161 cc and,protein
R2600 T3164 T3165 amod myeloid-related,protein
R2601 T3165 T3161 conj protein,protein
R2602 T3166 T3165 nummod 14,protein
R2603 T3167 T3165 punct ",",protein
R2604 T3168 T3171 amod damage-associated,molecules
R2605 T3169 T3170 amod molecular,pattern
R2606 T3170 T3171 compound pattern,molecules
R2607 T3171 T3165 conj molecules,protein
R2608 T3172 T3171 acl belonging,molecules
R2609 T3173 T3172 prep to,belonging
R2610 T3174 T3176 det the,family
R2611 T3175 T3176 compound S100,family
R2615 T3176 T3173 pobj family,to
R2620 T3177 T3176 prep of,family
R2622 T3178 T3179 amod calcium-binding,proteins
R2624 T3179 T3177 pobj proteins,of
R2625 T3180 T3181 punct ",",are
R2626 T3181 T3181 ROOT are,are
R2631 T3182 T3181 advmod also,are
R2632 T3183 T3184 advmod abundantly,present
R2634 T3184 T3181 acomp present,are
R2635 T3185 T3184 prep in,present
R2636 T3186 T3188 nmod RA,fluid
R2639 T3187 T3188 compound synovial,fluid
R2640 T3188 T3185 pobj fluid,in
R2641 T3189 T3181 punct ",",are
R2642 T3190 T3181 cc and,are
R2643 T3191 T3193 aux have,suggested
R2644 T3192 T3193 auxpass been,suggested
R2645 T3193 T3181 conj suggested,are
R2646 T3194 T3196 aux to,involved
R2647 T3195 T3196 auxpass be,involved
R2649 T3196 T3193 xcomp involved,suggested
R2650 T3197 T3196 prep in,involved
R2651 T3198 T3200 amod TLR4-induced,inflammation
R2653 T3199 T3200 amod chronic,inflammation
R2655 T3200 T3197 pobj inflammation,in
R2657 T3201 T3200 prep in,inflammation
R2659 T3202 T3203 compound RA,[
R2660 T3203 T3201 pobj [,in
R2661 T3204 T3205 nummod "17,18",]
R2665 T3205 T3193 conj ],suggested
R2668 T3206 T3181 punct .,are
R2669 T3207 T3210 amod Other,ligands
R2674 T3208 T3210 amod endogenous,ligands
R2677 T3209 T3210 compound TLR,ligands
R2678 T3210 T3218 nsubj ligands,are
R2679 T3211 T3214 nsubjpass that,involved
R2680 T3212 T3214 aux may,involved
R2681 T3213 T3214 auxpass be,involved

DLUT931

Id Subject Object Predicate Lexical cue
T3400 690-697 Positive_regulation denotes induced
T3399 267-276 Positive_regulation denotes increased
T3398 152-160 Localization denotes released
T3397 115-123 Localization denotes secreted
T3389 879-889 Protein denotes tenascin C
T3388 869-877 Protein denotes biglycan
T3387 856-867 Protein denotes fibronectin
T3386 685-689 Protein denotes TLR4
T3385 461-487 Protein denotes myeloid-related protein 14
T3384 431-456 Protein denotes Myeloid-related protein 8
T3383 368-373 Protein denotes HMGB1
T3382 303-308 Protein denotes HMGB1
T3381 258-263 Protein denotes HMGB1
T3380 219-231 Protein denotes TLR4 ligands
T3379 74-93 Protein denotes chromatin component
T3378 47-52 Protein denotes HMGB1
T3377 0-45 Protein denotes High mobility group box chromosomal protein 1
R2695 T3379 T3397 themeOf chromatin component,secreted
R2696 T3379 T3398 themeOf chromatin component,released
R2697 T3381 T3399 themeOf HMGB1,increased
R2700 T3386 T3400 themeOf TLR4,induced

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3287 685-689 http://www.uniprot.org/uniprot/O00206 denotes TLR4
T3286 219-223 http://www.uniprot.org/uniprot/O00206 denotes TLR4

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T1846 879-889 Protein denotes tenascin C
T1845 869-877 Protein denotes biglycan
T1844 856-867 Protein denotes fibronectin
T1843 685-689 Protein denotes TLR4
T1842 461-487 Protein denotes myeloid-related protein 14
T1841 431-456 Protein denotes Myeloid-related protein 8
T1840 368-373 Protein denotes HMGB1
T1839 303-308 Protein denotes HMGB1
T1838 258-263 Protein denotes HMGB1
T1837 219-231 Protein denotes TLR4 ligands
T1836 74-93 Protein denotes chromatin component
T1835 47-52 Protein denotes HMGB1
T1834 0-45 Protein denotes High mobility group box chromosomal protein 1

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T1816 74-93 Antecedent denotes chromatin component
T1815 94-98 Anaphor denotes that
R1313 T1815 T1816 boundBy that,chromatin component

2_test

Id Subject Object Predicate Lexical cue
21639951-12847700-4289443 426-428 12847700 denotes 16
21639951-10728757-4289444 726-728 10728757 denotes 17
21639951-17767165-4289445 729-731 17767165 denotes 18
21639951-19772831-4289446 936-938 19772831 denotes 14
21639951-20629986-4289447 939-941 20629986 denotes 15

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T2489 1102-1104 NN denotes RA
T2488 1099-1101 IN denotes in
T2487 1088-1098 NN denotes expression
T2486 1083-1087 NN denotes gene
T2485 1070-1082 JJ denotes inflammatory
T2484 1066-1069 CC denotes and
T2483 1055-1065 NN denotes activation
T2482 1049-1054 NN denotes NF-κB
T2481 1046-1048 TO denotes to
T2480 1035-1045 VB denotes contribute
T2479 1031-1034 MD denotes may
T2478 1024-1030 NN denotes tissue
T2477 1018-1023 JJ denotes joint
T2476 1009-1017 JJ denotes inflamed
T2475 1005-1008 DT denotes the
T2474 1002-1004 IN denotes in
T2473 994-1001 NN denotes ligands
T2472 990-993 NN denotes TLR
T2471 982-989 JJ denotes several
T2470 977-981 IN denotes that
T2469 969-976 VB denotes suggest
T2468 961-968 NN denotes studies
T2467 955-960 DT denotes these
T2466 953-954 -COMMA- denotes ,
T2465 945-953 RB denotes Together
T2464 942-943 -RRB- denotes )
T2463 941-942 -RRB- denotes ]
T2462 936-941 CD denotes 14,15
T2461 935-936 -LRB- denotes [
T2460 932-934 IN denotes in
T2459 923-931 VB denotes reviewed
T2458 922-923 -LRB- denotes (
T2457 912-921 NN denotes fragments
T2456 907-911 NN denotes acid
T2455 895-906 JJ denotes hyal-uronic
T2454 891-894 CC denotes and
T2453 889-890 -COMMA- denotes ,
T2452 888-889 NN denotes C
T2451 879-887 NN denotes tenascin
T2450 877-878 -COMMA- denotes ,
T2449 869-877 NN denotes biglycan
T2448 867-868 -COMMA- denotes ,
T2447 856-867 NN denotes fibronectin
T2446 854-855 -COMMA- denotes ,
T2445 844-854 NN denotes fibrinogen
T2444 841-843 IN denotes as
T2443 836-840 JJ denotes such
T2442 825-835 NN denotes components
T2441 818-824 NN denotes matrix
T2440 804-817 JJ denotes extracellular
T2439 800-803 VB denotes are
T2438 790-799 NN denotes pathology
T2437 787-789 NN denotes RA
T2436 784-786 IN denotes in
T2435 775-783 VB denotes involved
T2434 772-774 VB denotes be
T2433 768-771 MD denotes may
T2432 763-767 WDT denotes that
T2431 755-762 NN denotes ligands
T2430 751-754 NN denotes TLR
T2429 740-750 JJ denotes endogenous
T2428 734-739 JJ denotes Other
T2427 731-732 -RRB- denotes ]
T2426 726-731 CD denotes 17,18
T2425 725-726 -LRB- denotes [
T2424 722-724 NN denotes RA
T2423 719-721 IN denotes in
T2422 706-718 NN denotes inflammation
T2421 698-705 JJ denotes chronic
T2420 685-697 JJ denotes TLR4-induced
T2419 682-684 IN denotes in
T2418 673-681 VB denotes involved
T2417 670-672 VB denotes be
T2416 667-669 TO denotes to
T2415 657-666 VB denotes suggested
T2414 652-656 VB denotes been
T2413 647-651 VB denotes have
T2412 643-646 CC denotes and
T2411 641-642 -COMMA- denotes ,
T2410 636-641 NN denotes fluid
T2409 627-635 JJ denotes synovial
T2408 624-626 NN denotes RA
T2407 621-623 IN denotes in
T2406 613-620 JJ denotes present
T2405 602-612 RB denotes abundantly
T2404 597-601 RB denotes also
T2403 593-596 VB denotes are
T2402 591-592 -COMMA- denotes ,
T2401 583-591 NN denotes proteins
T2400 567-582 JJ denotes calcium-binding
T2399 564-566 IN denotes of
T2398 557-563 NN denotes family
T2397 552-556 NN denotes S100
T2396 548-551 DT denotes the
T2395 545-547 TO denotes to
T2394 535-544 VB denotes belonging
T2393 525-534 NN denotes molecules
T2392 517-524 NN denotes pattern
T2391 507-516 JJ denotes molecular
T2390 489-506 JJ denotes damage-associated
T2389 487-488 -COMMA- denotes ,
T2388 485-487 CD denotes 14
T2387 477-484 NN denotes protein
T2386 461-476 JJ denotes myeloid-related
T2385 457-460 CC denotes and
T2384 455-456 CD denotes 8
T2383 447-454 NN denotes protein
T2382 431-446 JJ denotes Myeloid-related
T2381 428-429 -RRB- denotes ]
T2380 426-428 CD denotes 16
T2379 425-426 -LRB- denotes [
T2378 420-424 NN denotes mice
T2377 417-419 IN denotes in
T2376 407-416 NN denotes arthritis
T2375 390-406 JJ denotes collagen-induced
T2374 382-389 IN denotes against
T2373 374-381 NN denotes protect
T2372 368-373 NN denotes HMGB1
T2371 365-367 IN denotes of
T2370 358-364 NN denotes domain
T2369 353-357 NN denotes BoxA
T2368 340-352 JJ denotes antagonistic
T2367 336-339 DT denotes the
T2366 333-335 CC denotes or
T2365 322-332 NN denotes antibodies
T2364 309-321 VB denotes neutralising
T2363 303-308 NN denotes HMGB1
T2362 299-302 CC denotes and
T2361 292-298 NN denotes tissue
T2360 283-291 JJ denotes synovial
T2359 280-282 NN denotes RA
T2358 277-279 IN denotes in
T2357 267-276 VB denotes increased
T2356 264-266 VB denotes is
T2355 258-263 NN denotes HMGB1
T2354 247-256 NN denotes pathology
T2353 244-246 NN denotes RA
T2352 241-243 IN denotes in
T2351 232-240 VB denotes involved
T2350 224-231 NN denotes ligands
T2349 219-223 NN denotes TLR4
T2348 208-218 JJ denotes endogenous
T2347 199-207 JJ denotes putative
T2346 194-198 RB denotes most
T2345 190-193 DT denotes the
T2344 187-189 IN denotes of
T2343 183-186 CD denotes one
T2342 180-182 VB denotes is
T2341 178-179 -COMMA- denotes ,
T2340 173-178 NN denotes cells
T2339 164-172 JJ denotes necrotic
T2338 161-163 IN denotes by
T2337 152-160 VB denotes released
T2336 142-151 RB denotes passively
T2335 139-141 CC denotes or
T2334 127-138 NN denotes macrophages
T2333 124-126 IN denotes by
T2332 115-123 VB denotes secreted
T2331 106-114 RB denotes actively
T2330 103-105 VB denotes be
T2329 99-102 MD denotes can
T2328 94-98 WDT denotes that
T2327 84-93 NN denotes component
T2326 74-83 NN denotes chromatin
T2325 64-73 VB denotes conserved
T2324 57-63 RB denotes highly
T2323 55-56 DT denotes a
T2322 53-54 -COMMA- denotes ,
T2321 52-53 -RRB- denotes )
T2320 47-52 NN denotes HMGB1
T2319 46-47 -LRB- denotes (
T2318 44-45 CD denotes 1
T2317 36-43 NN denotes protein
T2316 24-35 JJ denotes chromosomal
T2315 20-23 NN denotes box
T2314 14-19 NN denotes group
T2313 5-13 NN denotes mobility
T2312 0-4 JJ denotes High
R1933 T2438 T2437 arg1Of pathology,RA
R1934 T2442 T2440 arg1Of components,extracellular
R1935 T2442 T2441 arg1Of components,matrix
R1798 T2317 T2312 arg1Of protein,High
R1799 T2317 T2313 arg1Of protein,mobility
R1800 T2317 T2314 arg1Of protein,group
R1801 T2317 T2315 arg1Of protein,box
R1802 T2317 T2316 arg1Of protein,chromosomal
R1803 T2317 T2318 arg1Of protein,1
R1804 T2317 T2319 arg1Of protein,(
R1805 T2317 T2322 arg1Of protein,","
R1806 T2317 T2342 arg1Of protein,is
R1807 T2320 T2319 arg2Of HMGB1,(
R1808 T2321 T2319 arg3Of ),(
R1809 T2325 T2324 arg1Of conserved,highly
R1810 T2327 T2322 arg2Of component,","
R1811 T2327 T2323 arg1Of component,a
R1812 T2327 T2325 arg1Of component,conserved
R1813 T2327 T2326 arg1Of component,chromatin
R1814 T2327 T2328 arg1Of component,that
R1815 T2327 T2329 arg1Of component,can
R1816 T2327 T2330 arg1Of component,be
R1817 T2327 T2332 arg2Of component,secreted
R1818 T2327 T2337 arg2Of component,released
R1819 T2332 T2335 arg1Of secreted,or
R1820 T2334 T2332 arg1Of macrophages,secreted
R1821 T2334 T2333 arg2Of macrophages,by
R1822 T2335 T2329 arg2Of or,can
R1823 T2335 T2330 arg2Of or,be
R1824 T2335 T2331 arg1Of or,actively
R1825 T2337 T2335 arg2Of released,or
R1826 T2337 T2336 arg1Of released,passively
R1827 T2340 T2337 arg1Of cells,released
R1828 T2340 T2338 arg2Of cells,by
R1829 T2340 T2339 arg1Of cells,necrotic
R1830 T2342 T2341 arg1Of is,","
R1831 T2343 T2342 arg2Of one,is
R1832 T2343 T2344 arg1Of one,of
R1833 T2348 T2346 arg1Of endogenous,most
R1834 T2348 T2347 arg1Of endogenous,putative
R1835 T2350 T2344 arg2Of ligands,of
R1836 T2350 T2345 arg1Of ligands,the
R1837 T2350 T2348 arg1Of ligands,endogenous
R1838 T2350 T2349 arg1Of ligands,TLR4
R1839 T2350 T2351 arg2Of ligands,involved
R1840 T2351 T2352 arg1Of involved,in
R1841 T2354 T2352 arg2Of pathology,in
R1842 T2354 T2353 arg1Of pathology,RA
R1843 T2355 T2356 arg1Of HMGB1,is
R1844 T2355 T2357 arg2Of HMGB1,increased
R1845 T2357 T2356 arg2Of increased,is
R1846 T2357 T2358 arg1Of increased,in
R1847 T2357 T2374 arg1Of increased,against
R1848 T2361 T2359 arg1Of tissue,RA
R1849 T2361 T2360 arg1Of tissue,synovial
R1850 T2361 T2362 arg1Of tissue,and
R1851 T2362 T2366 arg1Of and,or
R1852 T2365 T2362 arg2Of antibodies,and
R1853 T2365 T2363 arg1Of antibodies,HMGB1
R1854 T2365 T2364 arg1Of antibodies,neutralising
R1855 T2366 T2358 arg2Of or,in
R1856 T2370 T2366 arg2Of domain,or
R1857 T2370 T2367 arg1Of domain,the
R1858 T2370 T2368 arg1Of domain,antagonistic
R1859 T2370 T2369 arg1Of domain,BoxA
R1860 T2370 T2371 arg1Of domain,of
R1861 T2373 T2371 arg2Of protect,of
R1862 T2373 T2372 arg1Of protect,HMGB1
R1863 T2376 T2374 arg2Of arthritis,against
R1864 T2376 T2375 arg1Of arthritis,collagen-induced
R1865 T2376 T2377 arg1Of arthritis,in
R1866 T2378 T2377 arg2Of mice,in
R1867 T2378 T2379 arg1Of mice,[
R1868 T2380 T2379 arg2Of 16,[
R1869 T2381 T2379 arg3Of ],[
R1870 T2383 T2382 arg1Of protein,Myeloid-related
R1871 T2383 T2384 arg1Of protein,8
R1872 T2383 T2385 arg1Of protein,and
R1873 T2385 T2389 arg1Of and,","
R1874 T2385 T2403 arg1Of and,are
R1875 T2385 T2406 arg1Of and,present
R1876 T2385 T2413 arg1Of and,have
R1877 T2385 T2414 arg1Of and,been
R1878 T2385 T2415 arg2Of and,suggested
R1879 T2385 T2417 arg1Of and,be
R1880 T2385 T2418 arg2Of and,involved
R1881 T2387 T2385 arg2Of protein,and
R1882 T2387 T2386 arg1Of protein,myeloid-related
R1883 T2387 T2388 arg1Of protein,14
R1884 T2393 T2389 arg2Of molecules,","
R1885 T2393 T2390 arg1Of molecules,damage-associated
R1886 T2393 T2391 arg1Of molecules,molecular
R1887 T2393 T2392 arg1Of molecules,pattern
R1888 T2393 T2394 arg1Of molecules,belonging
R1889 T2394 T2395 arg1Of belonging,to
R1890 T2398 T2395 arg2Of family,to
R1891 T2398 T2396 arg1Of family,the
R1892 T2398 T2397 arg1Of family,S100
R1893 T2398 T2399 arg1Of family,of
R1894 T2401 T2399 arg2Of proteins,of
R1895 T2401 T2400 arg1Of proteins,calcium-binding
R1896 T2403 T2404 arg1Of are,also
R1897 T2403 T2412 arg1Of are,and
R1898 T2406 T2403 arg2Of present,are
R1899 T2406 T2405 arg1Of present,abundantly
R1900 T2406 T2407 arg1Of present,in
R1901 T2410 T2407 arg2Of fluid,in
R1902 T2410 T2408 arg1Of fluid,RA
R1903 T2410 T2409 arg1Of fluid,synovial
R1904 T2412 T2402 arg1Of and,","
R1905 T2412 T2411 arg1Of and,","
R1906 T2415 T2412 arg2Of suggested,and
R1907 T2415 T2413 arg2Of suggested,have
R1908 T2415 T2414 arg2Of suggested,been
R1909 T2418 T2415 arg3Of involved,suggested
R1910 T2418 T2416 arg1Of involved,to
R1911 T2418 T2417 arg2Of involved,be
R1912 T2418 T2419 arg1Of involved,in
R1913 T2418 T2423 arg1Of involved,in
R1914 T2422 T2419 arg2Of inflammation,in
R1915 T2422 T2420 arg1Of inflammation,TLR4-induced
R1916 T2422 T2421 arg1Of inflammation,chronic
R1917 T2424 T2423 arg2Of RA,in
R1918 T2424 T2425 arg1Of RA,[
R1919 T2426 T2425 arg2Of "17,18",[
R1920 T2427 T2425 arg3Of ],[
R1921 T2431 T2428 arg1Of ligands,Other
R1922 T2431 T2429 arg1Of ligands,endogenous
R1923 T2431 T2430 arg1Of ligands,TLR
R1924 T2431 T2432 arg1Of ligands,that
R1925 T2431 T2433 arg1Of ligands,may
R1926 T2431 T2434 arg1Of ligands,be
R1927 T2431 T2435 arg2Of ligands,involved
R1928 T2431 T2439 arg1Of ligands,are
R1929 T2435 T2433 arg2Of involved,may
R1930 T2435 T2434 arg2Of involved,be
R1931 T2435 T2436 arg1Of involved,in
R1932 T2438 T2436 arg2Of pathology,in
R1936 T2442 T2444 arg1Of components,as
R1937 T2442 T2454 arg1Of components,and
R1938 T2444 T2443 arg1Of as,such
R1939 T2445 T2446 arg1Of fibrinogen,","
R1940 T2446 T2448 arg1Of ",",","
R1941 T2447 T2446 arg2Of fibronectin,","
R1942 T2448 T2450 arg1Of ",",","
R1943 T2449 T2448 arg2Of biglycan,","
R1944 T2450 T2444 arg2Of ",",as
R1945 T2452 T2450 arg2Of C,","
R1946 T2452 T2451 arg1Of C,tenascin
R1947 T2454 T2439 arg2Of and,are
R1948 T2454 T2453 arg1Of and,","
R1949 T2457 T2454 arg2Of fragments,and
R1950 T2457 T2455 arg1Of fragments,hyal-uronic
R1951 T2457 T2456 arg1Of fragments,acid
R1952 T2457 T2458 arg1Of fragments,(
R1953 T2459 T2458 arg2Of reviewed,(
R1954 T2459 T2460 arg1Of reviewed,in
R1955 T2459 T2461 arg1Of reviewed,[
R1956 T2462 T2461 arg2Of "14,15",[
R1957 T2463 T2461 arg3Of ],[
R1958 T2464 T2458 arg3Of ),(
R1959 T2468 T2467 arg1Of studies,these
R1960 T2468 T2469 arg1Of studies,suggest
R1961 T2469 T2465 arg1Of suggest,Together
R1962 T2469 T2466 arg1Of suggest,","
R1963 T2473 T2471 arg1Of ligands,several
R1964 T2473 T2472 arg1Of ligands,TLR
R1965 T2473 T2474 arg1Of ligands,in
R1966 T2473 T2479 arg1Of ligands,may
R1967 T2473 T2480 arg1Of ligands,contribute
R1968 T2478 T2474 arg2Of tissue,in
R1969 T2478 T2475 arg1Of tissue,the
R1970 T2478 T2476 arg1Of tissue,inflamed
R1971 T2478 T2477 arg1Of tissue,joint
R1972 T2480 T2469 arg2Of contribute,suggest
R1973 T2480 T2470 arg1Of contribute,that
R1974 T2480 T2479 arg2Of contribute,may
R1975 T2480 T2481 arg1Of contribute,to
R1976 T2483 T2482 arg1Of activation,NF-κB
R1977 T2483 T2484 arg1Of activation,and
R1978 T2484 T2481 arg2Of and,to
R1979 T2484 T2488 arg1Of and,in
R1980 T2487 T2484 arg2Of expression,and
R1981 T2487 T2485 arg1Of expression,inflammatory
R1982 T2487 T2486 arg1Of expression,gene
R1983 T2489 T2488 arg2Of RA,in

UBERON-AE

Id Subject Object Predicate Lexical cue
T1754 895-899 http://purl.obolibrary.org/obo/UBERON_3000101 denotes hyal
T1753 627-641 http://purl.obolibrary.org/obo/UBERON_0001090 denotes synovial fluid
T1752 1024-1030 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue
T1751 292-298 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue

GO-BP

Id Subject Object Predicate Lexical cue
T2513 1083-1098 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression
T2501 1049-1065 http://purl.obolibrary.org/obo/GO_0051092 denotes NF-κB activation
T2495 706-718 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation

GO-MF

Id Subject Object Predicate Lexical cue
T2530 575-591 http://purl.obolibrary.org/obo/GO_0005515 denotes binding proteins
T2529 567-591 http://purl.obolibrary.org/obo/GO_0048306 denotes calcium-binding proteins
T2528 322-332 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies
T2525 994-1001 http://purl.obolibrary.org/obo/GO_0005488 denotes ligands
T2524 755-762 http://purl.obolibrary.org/obo/GO_0005488 denotes ligands
T2523 224-231 http://purl.obolibrary.org/obo/GO_0005488 denotes ligands

GO-CC

Id Subject Object Predicate Lexical cue
T2543 74-83 http://purl.obolibrary.org/obo/GO_0000785 denotes chromatin
T2542 24-35 http://purl.obolibrary.org/obo/GO_0005694 denotes chromosomal
T2540 322-332 http://purl.obolibrary.org/obo/GO_0042571 denotes antibodies
T2537 322-332 http://purl.obolibrary.org/obo/GO_0019815 denotes antibodies
T2534 173-178 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T2547 844-854 http://purl.obolibrary.org/obo/GO_0005577 denotes fibrinogen
T2546 804-835 http://purl.obolibrary.org/obo/GO_0044420 denotes extracellular matrix components
T2545 804-824 http://purl.obolibrary.org/obo/GO_0031012 denotes extracellular matrix
T2544 804-817 http://purl.obolibrary.org/obo/GO_0005576 denotes extracellular

sentences

Id Subject Object Predicate Lexical cue
T1772 945-1105 Sentence denotes Together, these studies suggest that several TLR ligands in the inflamed joint tissue may contribute to NF-κB activation and inflammatory gene expression in RA.
T1771 734-944 Sentence denotes Other endogenous TLR ligands that may be involved in RA pathology are extracellular matrix components such as fibrinogen, fibronectin, biglycan, tenascin C, and hyal-uronic acid fragments (reviewed in [14,15]).
T1770 431-733 Sentence denotes Myeloid-related protein 8 and myeloid-related protein 14, damage-associated molecular pattern molecules belonging to the S100 family of calcium-binding proteins, are also abundantly present in RA synovial fluid, and have been suggested to be involved in TLR4-induced chronic inflammation in RA [17,18].
T1769 258-430 Sentence denotes HMGB1 is increased in RA synovial tissue and HMGB1 neutralising antibodies or the antagonistic BoxA domain of HMGB1 protect against collagen-induced arthritis in mice [16].
T1768 0-257 Sentence denotes High mobility group box chromosomal protein 1 (HMGB1), a highly conserved chromatin component that can be actively secreted by macrophages or passively released by necrotic cells, is one of the most putative endogenous TLR4 ligands involved in RA pathology.
T33 0-257 Sentence denotes High mobility group box chromosomal protein 1 (HMGB1), a highly conserved chromatin component that can be actively secreted by macrophages or passively released by necrotic cells, is one of the most putative endogenous TLR4 ligands involved in RA pathology.
T34 258-430 Sentence denotes HMGB1 is increased in RA synovial tissue and HMGB1 neutralising antibodies or the antagonistic BoxA domain of HMGB1 protect against collagen-induced arthritis in mice [16].
T35 431-733 Sentence denotes Myeloid-related protein 8 and myeloid-related protein 14, damage-associated molecular pattern molecules belonging to the S100 family of calcium-binding proteins, are also abundantly present in RA synovial fluid, and have been suggested to be involved in TLR4-induced chronic inflammation in RA [17,18].
T36 734-944 Sentence denotes Other endogenous TLR ligands that may be involved in RA pathology are extracellular matrix components such as fibrinogen, fibronectin, biglycan, tenascin C, and hyal-uronic acid fragments (reviewed in [14,15]).
T37 945-1105 Sentence denotes Together, these studies suggest that several TLR ligands in the inflamed joint tissue may contribute to NF-κB activation and inflammatory gene expression in RA.

ICD10

Id Subject Object Predicate Lexical cue
T2515 407-416 http://purl.bioontology.org/ontology/ICD10/M13.9 denotes arthritis

simple1

Id Subject Object Predicate Lexical cue
T2603 879-889 Protein denotes tenascin C
T2602 869-877 Protein denotes biglycan
T2601 856-867 Protein denotes fibronectin
T2600 685-689 Protein denotes TLR4
T2599 461-487 Protein denotes myeloid-related protein 14
T2598 431-456 Protein denotes Myeloid-related protein 8
T2597 368-373 Protein denotes HMGB1
T2596 303-308 Protein denotes HMGB1
T2595 258-263 Protein denotes HMGB1
T2594 219-231 Protein denotes TLR4 ligands
T2593 74-93 Protein denotes chromatin component
T2592 47-52 Protein denotes HMGB1
T2591 0-45 Protein denotes High mobility group box chromosomal protein 1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T3583 690-697 Positive_regulation denotes induced
T3582 267-276 Positive_regulation denotes increased
T3581 152-160 Localization denotes released
T3580 115-123 Localization denotes secreted
T3573 879-889 Protein denotes tenascin C
T3572 869-877 Protein denotes biglycan
T3571 856-867 Protein denotes fibronectin
T3570 685-689 Protein denotes TLR4
T3569 461-487 Protein denotes myeloid-related protein 14
T3568 431-456 Protein denotes Myeloid-related protein 8
T3567 368-373 Protein denotes HMGB1
T3566 303-308 Protein denotes HMGB1
T3565 258-263 Protein denotes HMGB1
T3564 219-231 Protein denotes TLR4 ligands
T3563 74-93 Protein denotes chromatin component
T3562 47-52 Protein denotes HMGB1
T3561 0-45 Protein denotes High mobility group box chromosomal protein 1
R2761 T3561 T3580 themeOf High mobility group box chromosomal protein 1,secreted
R2762 T3561 T3581 themeOf High mobility group box chromosomal protein 1,released
R2763 T3562 T3581 themeOf HMGB1,released
R2764 T3563 T3580 themeOf chromatin component,secreted
R2765 T3563 T3581 themeOf chromatin component,released
R2766 T3564 T3581 themeOf TLR4 ligands,released
R2767 T3565 T3582 themeOf HMGB1,increased
R2769 T3570 T3583 themeOf TLR4,induced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T3327 690-697 Positive_regulation denotes induced
T3326 267-276 Positive_regulation denotes increased
T3325 152-160 Localization denotes released
T3324 115-123 Localization denotes secreted
T3317 879-889 Protein denotes tenascin C
T3316 869-877 Protein denotes biglycan
T3315 856-867 Protein denotes fibronectin
T3314 685-689 Protein denotes TLR4
T3313 461-487 Protein denotes myeloid-related protein 14
T3312 431-456 Protein denotes Myeloid-related protein 8
T3311 368-373 Protein denotes HMGB1
T3310 303-308 Protein denotes HMGB1
T3309 258-263 Protein denotes HMGB1
T3308 219-231 Protein denotes TLR4 ligands
T3307 74-93 Protein denotes chromatin component
T3306 47-52 Protein denotes HMGB1
T3305 0-45 Protein denotes High mobility group box chromosomal protein 1
R2627 T3305 T3325 themeOf High mobility group box chromosomal protein 1,released
R2628 T3307 T3324 themeOf chromatin component,secreted
R2629 T3307 T3325 themeOf chromatin component,released
R2630 T3309 T3326 themeOf HMGB1,increased
R2633 T3314 T3327 themeOf TLR4,induced

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T3698 1049-1065 Positive_regulation denotes NF-κB activation
T3665 461-487 Protein denotes myeloid-related protein 14
T3663 124-138 Entity denotes by macrophages
T3662 219-223 Protein denotes TLR4
T3660 856-867 Protein denotes fibronectin
T3654 895-911 Entity denotes hyal-uronic acid
T3653 1102-1104 Protein denotes RA
T3650 303-332 Entity denotes HMGB1 neutralising antibodies
T3649 431-456 Protein denotes Myeloid-related protein 8
T3645 1049-1054 Protein denotes NF-κB
T3643 280-282 Protein denotes RA
T3640 624-626 Protein denotes RA
T3638 74-83 Entity denotes chromatin
T3637 844-854 Protein denotes fibrinogen
T3634 869-877 Protein denotes biglycan
T3627 356-373 Entity denotes A domain of HMGB1
T3626 420-429 Protein denotes mice [16]
T3625 241-256 Protein denotes in RA pathology
T3624 567-591 Protein denotes calcium-binding proteins
T3620 804-843 Entity denotes extracellular matrix components such as
T3617 183-256 Entity denotes one of the most putative endogenous TLR4 ligands involved in RA pathology
T3614 548-592 Protein denotes the S100 family of calcium-binding proteins,
T3613 303-332 Protein denotes HMGB1 neutralising antibodies
T3612 390-406 Entity denotes collagen-induced
T3608 755-789 Entity denotes ligands that may be involved in RA
T3601 187-256 Entity denotes of the most putative endogenous TLR4 ligands involved in RA pathology
T3599 258-263 Protein denotes HMGB1
T3597 47-52 Protein denotes HMGB1
T3592 368-373 Protein denotes HMGB1
T3588 879-887 Protein denotes tenascin
T3587 982-1030 Entity denotes several TLR ligands in the inflamed joint tissue
T3586 0-54 Protein denotes High mobility group box chromosomal protein 1 (HMGB1),
T3585 525-534 Entity denotes molecules
T3687 685-697 Protein denotes TLR4-induced
T3679 784-789 Protein denotes in RA
T3677 722-724 Protein denotes RA
R2772 T3645 T3698 themeOf NF-κB,NF-κB activation

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T3472 1035-1045 Positive_regulation denotes contribute
T3471 1055-1065 Positive_regulation denotes activation
T3470 1049-1054 Protein denotes NF-κB
T3469 879-889 Protein denotes tenascin C
T3468 856-867 Protein denotes fibronectin
T3467 844-854 Protein denotes fibrinogen
T3466 685-689 Protein denotes TLR4
T3465 552-563 Protein denotes S100 family
T3464 267-276 Positive_regulation denotes increased
T3463 390-398 Protein denotes collagen
T3462 368-373 Protein denotes HMGB1
T3461 353-364 Protein denotes BoxA domain
T3460 303-332 Protein denotes HMGB1 neutralising antibodies
T3459 258-263 Protein denotes HMGB1
T3458 152-160 Localization denotes released
T3457 152-160 Localization denotes released
T3456 115-123 Localization denotes secreted
T3455 115-123 Localization denotes secreted
T3454 219-223 Protein denotes TLR4
T3453 47-52 Protein denotes HMGB1
T3452 0-45 Protein denotes High mobility group box chromosomal protein 1
R2712 T3452 T3455 themeOf High mobility group box chromosomal protein 1,secreted
R2713 T3452 T3457 themeOf High mobility group box chromosomal protein 1,released
R2714 T3453 T3456 themeOf HMGB1,secreted
R2715 T3453 T3458 themeOf HMGB1,released
R2716 T3459 T3464 themeOf HMGB1,increased
R2718 T3470 T3471 themeOf NF-κB,activation
R2726 T3471 T3472 themeOf activation,contribute

test3

Id Subject Object Predicate Lexical cue
T1746 879-889 Protein denotes tenascin C
T1745 869-877 Protein denotes biglycan
T1744 856-867 Protein denotes fibronectin
T1743 685-689 Protein denotes TLR4
T1742 461-487 Protein denotes myeloid-related protein 14
T1741 431-456 Protein denotes Myeloid-related protein 8
T1740 368-373 Protein denotes HMGB1
T1739 303-308 Protein denotes HMGB1
T1738 258-263 Protein denotes HMGB1
T1737 219-231 Protein denotes TLR4 ligands
T1736 152-160 Localization denotes released
T1735 74-93 Protein denotes chromatin component
T1734 47-52 Protein denotes HMGB1
T1733 0-45 Protein denotes High mobility group box chromosomal protein 1
T1709 879-889 Protein denotes tenascin C
T1708 869-877 Protein denotes biglycan
T1707 856-867 Protein denotes fibronectin
T1706 685-689 Protein denotes TLR4
T1705 461-487 Protein denotes myeloid-related protein 14
T1704 431-456 Protein denotes Myeloid-related protein 8
T1703 368-373 Protein denotes HMGB1
T1702 303-308 Protein denotes HMGB1
T1701 258-263 Protein denotes HMGB1
T1700 219-231 Protein denotes TLR4 ligands
T1699 74-93 Protein denotes chromatin component
T1698 47-52 Protein denotes HMGB1
T1697 0-45 Protein denotes High mobility group box chromosomal protein 1
R1292 T1733 T1736 themeOf High mobility group box chromosomal protein 1,released
R1293 T1733 T1735 themeOf High mobility group box chromosomal protein 1,chromatin component
R1294 T1734 T1735 themeOf HMGB1,chromatin component
R1295 T1734 T1733 equivalentTo HMGB1,High mobility group box chromosomal protein 1
R1296 T1735 T1736 themeOf chromatin component,released