PMC:3218875 / 4479-4755 JSONTXT

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    testone

    {"project":"testone","denotations":[{"id":"T1652","span":{"begin":97,"end":101},"obj":"Protein"}],"text":"However, studies with antagonistic anti-CD40 or anti-CD154 antibodies led to the conclusion that CD40 signals may be important at the initial stages of arthritis induction, but are not required once disease is established and pathogenic antibodies are already present [11,12]."}

    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T2892","span":{"begin":237,"end":247},"obj":"NNS"},{"id":"T2891","span":{"begin":226,"end":236},"obj":"JJ"},{"id":"T2890","span":{"begin":222,"end":225},"obj":"CC"},{"id":"T2889","span":{"begin":210,"end":221},"obj":"VBN"},{"id":"T2888","span":{"begin":207,"end":209},"obj":"VBZ"},{"id":"T2887","span":{"begin":199,"end":206},"obj":"NN"},{"id":"T2886","span":{"begin":194,"end":198},"obj":"RB"},{"id":"T2885","span":{"begin":185,"end":193},"obj":"VBN"},{"id":"T2884","span":{"begin":181,"end":184},"obj":"RB"},{"id":"T2883","span":{"begin":177,"end":180},"obj":"VBP"},{"id":"T2882","span":{"begin":173,"end":176},"obj":"CC"},{"id":"T2881","span":{"begin":171,"end":172},"obj":","},{"id":"T2880","span":{"begin":162,"end":171},"obj":"NN"},{"id":"T2879","span":{"begin":152,"end":161},"obj":"NN"},{"id":"T2878","span":{"begin":149,"end":151},"obj":"IN"},{"id":"T2877","span":{"begin":142,"end":148},"obj":"NNS"},{"id":"T2876","span":{"begin":134,"end":141},"obj":"JJ"},{"id":"T2875","span":{"begin":130,"end":133},"obj":"DT"},{"id":"T2874","span":{"begin":127,"end":129},"obj":"IN"},{"id":"T2873","span":{"begin":117,"end":126},"obj":"JJ"},{"id":"T2872","span":{"begin":114,"end":116},"obj":"VB"},{"id":"T2871","span":{"begin":110,"end":113},"obj":"MD"},{"id":"T2870","span":{"begin":102,"end":109},"obj":"NNS"},{"id":"T2869","span":{"begin":97,"end":101},"obj":"NNP"},{"id":"T2868","span":{"begin":92,"end":96},"obj":"WDT"},{"id":"T2867","span":{"begin":81,"end":91},"obj":"NN"},{"id":"T2866","span":{"begin":77,"end":80},"obj":"DT"},{"id":"T2865","span":{"begin":74,"end":76},"obj":"TO"},{"id":"T2864","span":{"begin":70,"end":73},"obj":"VBD"},{"id":"T2863","span":{"begin":59,"end":69},"obj":"NNS"},{"id":"T2862","span":{"begin":48,"end":58},"obj":"JJ"},{"id":"T2861","span":{"begin":45,"end":47},"obj":"CC"},{"id":"T2860","span":{"begin":35,"end":44},"obj":"JJ"},{"id":"T2859","span":{"begin":22,"end":34},"obj":"JJ"},{"id":"T2858","span":{"begin":17,"end":21},"obj":"IN"},{"id":"T2857","span":{"begin":9,"end":16},"obj":"NNS"},{"id":"T2856","span":{"begin":7,"end":8},"obj":","},{"id":"T2855","span":{"begin":0,"end":7},"obj":"RB"},{"id":"T2899","span":{"begin":275,"end":276},"obj":"."},{"id":"T2898","span":{"begin":274,"end":275},"obj":"NNP"},{"id":"T2897","span":{"begin":269,"end":274},"obj":"CD"},{"id":"T2896","span":{"begin":268,"end":269},"obj":"NNP"},{"id":"T2895","span":{"begin":260,"end":267},"obj":"JJ"},{"id":"T2894","span":{"begin":252,"end":259},"obj":"RB"},{"id":"T2893","span":{"begin":248,"end":251},"obj":"VBP"}],"relations":[{"id":"R2234","pred":"advmod","subj":"T2855","obj":"T2864"},{"id":"R2235","pred":"punct","subj":"T2856","obj":"T2864"},{"id":"R2236","pred":"nsubj","subj":"T2857","obj":"T2864"},{"id":"R2237","pred":"prep","subj":"T2858","obj":"T2857"},{"id":"R2238","pred":"amod","subj":"T2859","obj":"T2863"},{"id":"R2239","pred":"amod","subj":"T2860","obj":"T2863"},{"id":"R2240","pred":"cc","subj":"T2861","obj":"T2860"},{"id":"R2241","pred":"conj","subj":"T2862","obj":"T2860"},{"id":"R2242","pred":"pobj","subj":"T2863","obj":"T2858"},{"id":"R2244","pred":"ROOT","subj":"T2864","obj":"T2864"},{"id":"R2246","pred":"prep","subj":"T2865","obj":"T2864"},{"id":"R2249","pred":"det","subj":"T2866","obj":"T2867"},{"id":"R2253","pred":"pobj","subj":"T2867","obj":"T2865"},{"id":"R2257","pred":"mark","subj":"T2868","obj":"T2872"},{"id":"R2261","pred":"compound","subj":"T2869","obj":"T2870"},{"id":"R2265","pred":"nsubj","subj":"T2870","obj":"T2872"},{"id":"R2269","pred":"aux","subj":"T2871","obj":"T2872"},{"id":"R2273","pred":"acl","subj":"T2872","obj":"T2867"},{"id":"R2279","pred":"acomp","subj":"T2873","obj":"T2872"},{"id":"R2282","pred":"prep","subj":"T2874","obj":"T2872"},{"id":"R2287","pred":"det","subj":"T2875","obj":"T2877"},{"id":"R2288","pred":"amod","subj":"T2876","obj":"T2877"},{"id":"R2290","pred":"pobj","subj":"T2877","obj":"T2874"},{"id":"R2294","pred":"prep","subj":"T2878","obj":"T2877"},{"id":"R2298","pred":"compound","subj":"T2879","obj":"T2880"},{"id":"R2302","pred":"pobj","subj":"T2880","obj":"T2878"},{"id":"R2306","pred":"punct","subj":"T2881","obj":"T2864"},{"id":"R2309","pred":"cc","subj":"T2882","obj":"T2864"},{"id":"R2314","pred":"auxpass","subj":"T2883","obj":"T2885"},{"id":"R2318","pred":"neg","subj":"T2884","obj":"T2885"},{"id":"R2321","pred":"conj","subj":"T2885","obj":"T2864"},{"id":"R2328","pred":"mark","subj":"T2886","obj":"T2889"},{"id":"R2333","pred":"nsubjpass","subj":"T2887","obj":"T2889"},{"id":"R2336","pred":"auxpass","subj":"T2888","obj":"T2889"},{"id":"R2341","pred":"advcl","subj":"T2889","obj":"T2885"},{"id":"R2345","pred":"cc","subj":"T2890","obj":"T2889"},{"id":"R2348","pred":"conj","subj":"T2891","obj":"T2889"},{"id":"R2352","pred":"nsubj","subj":"T2892","obj":"T2893"},{"id":"R2356","pred":"conj","subj":"T2893","obj":"T2864"},{"id":"R2360","pred":"advmod","subj":"T2894","obj":"T2893"},{"id":"R2364","pred":"acomp","subj":"T2895","obj":"T2893"},{"id":"R2368","pred":"compound","subj":"T2896","obj":"T2898"},{"id":"R2372","pred":"compound","subj":"T2897","obj":"T2898"},{"id":"R2374","pred":"attr","subj":"T2898","obj":"T2893"},{"id":"R2375","pred":"punct","subj":"T2899","obj":"T2893"}],"text":"However, studies with antagonistic anti-CD40 or anti-CD154 antibodies led to the conclusion that CD40 signals may be important at the initial stages of arthritis induction, but are not required once disease is established and pathogenic antibodies are already present [11,12]."}

    DLUT931

    {"project":"DLUT931","denotations":[{"id":"T3372","span":{"begin":97,"end":101},"obj":"Protein"}],"text":"However, studies with antagonistic anti-CD40 or anti-CD154 antibodies led to the conclusion that CD40 signals may be important at the initial stages of arthritis induction, but are not required once disease is established and pathogenic antibodies are already present [11,12]."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T3284","span":{"begin":53,"end":58},"obj":"http://www.uniprot.org/uniprot/P29965"},{"id":"T3281","span":{"begin":97,"end":101},"obj":"http://www.uniprot.org/uniprot/P25942"},{"id":"T3280","span":{"begin":40,"end":44},"obj":"http://www.uniprot.org/uniprot/P25942"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"However, studies with antagonistic anti-CD40 or anti-CD154 antibodies led to the conclusion that CD40 signals may be important at the initial stages of arthritis induction, but are not required once disease is established and pathogenic antibodies are already present [11,12]."}

    bionlp-st-ge-2016-test-proteins

    {"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T1829","span":{"begin":97,"end":101},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"However, studies with antagonistic anti-CD40 or anti-CD154 antibodies led to the conclusion that CD40 signals may be important at the initial stages of arthritis induction, but are not required once disease is established and pathogenic antibodies are already present [11,12]."}

    2_test

    {"project":"2_test","denotations":[{"id":"21639951-7689748-4289437","span":{"begin":269,"end":271},"obj":"7689748"},{"id":"21639951-11083282-4289438","span":{"begin":272,"end":274},"obj":"11083282"}],"text":"However, studies with antagonistic anti-CD40 or anti-CD154 antibodies led to the conclusion that CD40 signals may be important at the initial stages of arthritis induction, but are not required once disease is established and pathogenic antibodies are already present [11,12]."}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T2130","span":{"begin":274,"end":275},"obj":"-RRB-"},{"id":"T2129","span":{"begin":269,"end":274},"obj":"CD"},{"id":"T2128","span":{"begin":268,"end":269},"obj":"-LRB-"},{"id":"T2127","span":{"begin":260,"end":267},"obj":"JJ"},{"id":"T2126","span":{"begin":252,"end":259},"obj":"RB"},{"id":"T2125","span":{"begin":248,"end":251},"obj":"VB"},{"id":"T2124","span":{"begin":237,"end":247},"obj":"NN"},{"id":"T2123","span":{"begin":226,"end":236},"obj":"JJ"},{"id":"T2122","span":{"begin":222,"end":225},"obj":"CC"},{"id":"T2121","span":{"begin":210,"end":221},"obj":"VB"},{"id":"T2120","span":{"begin":207,"end":209},"obj":"VB"},{"id":"T2119","span":{"begin":199,"end":206},"obj":"NN"},{"id":"T2118","span":{"begin":194,"end":198},"obj":"RB"},{"id":"T2117","span":{"begin":185,"end":193},"obj":"VB"},{"id":"T2116","span":{"begin":181,"end":184},"obj":"RB"},{"id":"T2115","span":{"begin":177,"end":180},"obj":"VB"},{"id":"T2114","span":{"begin":173,"end":176},"obj":"CC"},{"id":"T2113","span":{"begin":171,"end":172},"obj":"-COMMA-"},{"id":"T2112","span":{"begin":162,"end":171},"obj":"NN"},{"id":"T2111","span":{"begin":152,"end":161},"obj":"NN"},{"id":"T2110","span":{"begin":149,"end":151},"obj":"IN"},{"id":"T2109","span":{"begin":142,"end":148},"obj":"NN"},{"id":"T2108","span":{"begin":134,"end":141},"obj":"JJ"},{"id":"T2107","span":{"begin":130,"end":133},"obj":"DT"},{"id":"T2106","span":{"begin":127,"end":129},"obj":"IN"},{"id":"T2105","span":{"begin":117,"end":126},"obj":"JJ"},{"id":"T2104","span":{"begin":114,"end":116},"obj":"VB"},{"id":"T2103","span":{"begin":110,"end":113},"obj":"MD"},{"id":"T2102","span":{"begin":102,"end":109},"obj":"NN"},{"id":"T2101","span":{"begin":97,"end":101},"obj":"NN"},{"id":"T2100","span":{"begin":92,"end":96},"obj":"IN"},{"id":"T2099","span":{"begin":81,"end":91},"obj":"NN"},{"id":"T2098","span":{"begin":77,"end":80},"obj":"DT"},{"id":"T2097","span":{"begin":74,"end":76},"obj":"TO"},{"id":"T2096","span":{"begin":70,"end":73},"obj":"VB"},{"id":"T2095","span":{"begin":59,"end":69},"obj":"NN"},{"id":"T2094","span":{"begin":48,"end":58},"obj":"JJ"},{"id":"T2093","span":{"begin":45,"end":47},"obj":"CC"},{"id":"T2092","span":{"begin":35,"end":44},"obj":"NN"},{"id":"T2091","span":{"begin":22,"end":34},"obj":"JJ"},{"id":"T2090","span":{"begin":17,"end":21},"obj":"IN"},{"id":"T2089","span":{"begin":9,"end":16},"obj":"NN"},{"id":"T2088","span":{"begin":7,"end":8},"obj":"-COMMA-"},{"id":"T2087","span":{"begin":0,"end":7},"obj":"RB"}],"relations":[{"id":"R1562","pred":"arg1Of","subj":"T2089","obj":"T2090"},{"id":"R1563","pred":"arg1Of","subj":"T2089","obj":"T2096"},{"id":"R1564","pred":"arg1Of","subj":"T2089","obj":"T2115"},{"id":"R1565","pred":"arg2Of","subj":"T2089","obj":"T2117"},{"id":"R1566","pred":"arg1Of","subj":"T2092","obj":"T2091"},{"id":"R1567","pred":"arg1Of","subj":"T2092","obj":"T2093"},{"id":"R1568","pred":"arg2Of","subj":"T2093","obj":"T2090"},{"id":"R1569","pred":"arg2Of","subj":"T2095","obj":"T2093"},{"id":"R1570","pred":"arg1Of","subj":"T2095","obj":"T2094"},{"id":"R1571","pred":"arg1Of","subj":"T2096","obj":"T2097"},{"id":"R1572","pred":"arg1Of","subj":"T2096","obj":"T2114"},{"id":"R1573","pred":"arg2Of","subj":"T2099","obj":"T2097"},{"id":"R1574","pred":"arg1Of","subj":"T2099","obj":"T2098"},{"id":"R1575","pred":"arg1Of","subj":"T2102","obj":"T2101"},{"id":"R1576","pred":"arg1Of","subj":"T2102","obj":"T2103"},{"id":"R1577","pred":"arg1Of","subj":"T2102","obj":"T2104"},{"id":"R1578","pred":"arg1Of","subj":"T2102","obj":"T2105"},{"id":"R1579","pred":"arg2Of","subj":"T2104","obj":"T2099"},{"id":"R1580","pred":"arg1Of","subj":"T2104","obj":"T2100"},{"id":"R1581","pred":"arg2Of","subj":"T2104","obj":"T2103"},{"id":"R1582","pred":"arg2Of","subj":"T2105","obj":"T2104"},{"id":"R1583","pred":"arg1Of","subj":"T2105","obj":"T2106"},{"id":"R1584","pred":"arg2Of","subj":"T2109","obj":"T2106"},{"id":"R1585","pred":"arg1Of","subj":"T2109","obj":"T2107"},{"id":"R1586","pred":"arg1Of","subj":"T2109","obj":"T2108"},{"id":"R1587","pred":"arg1Of","subj":"T2109","obj":"T2110"},{"id":"R1588","pred":"arg2Of","subj":"T2112","obj":"T2110"},{"id":"R1589","pred":"arg1Of","subj":"T2112","obj":"T2111"},{"id":"R1590","pred":"arg1Of","subj":"T2114","obj":"T2087"},{"id":"R1591","pred":"arg1Of","subj":"T2114","obj":"T2088"},{"id":"R1592","pred":"arg1Of","subj":"T2114","obj":"T2113"},{"id":"R1593","pred":"arg2Of","subj":"T2117","obj":"T2114"},{"id":"R1594","pred":"arg2Of","subj":"T2117","obj":"T2115"},{"id":"R1595","pred":"arg1Of","subj":"T2117","obj":"T2116"},{"id":"R1596","pred":"arg1Of","subj":"T2117","obj":"T2118"},{"id":"R1597","pred":"arg1Of","subj":"T2119","obj":"T2120"},{"id":"R1598","pred":"arg2Of","subj":"T2119","obj":"T2121"},{"id":"R1599","pred":"arg2Of","subj":"T2121","obj":"T2120"},{"id":"R1600","pred":"arg1Of","subj":"T2121","obj":"T2122"},{"id":"R1601","pred":"arg2Of","subj":"T2122","obj":"T2118"},{"id":"R1602","pred":"arg1Of","subj":"T2124","obj":"T21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studies with antagonistic anti-CD40 or anti-CD154 antibodies led to the conclusion that CD40 signals may be important at the initial stages of arthritis induction, but are not required once disease is established and pathogenic antibodies are already present [11,12]."}

    GO-MF

    {"project":"GO-MF","denotations":[{"id":"T2527","span":{"begin":237,"end":247},"obj":"http://purl.obolibrary.org/obo/GO_0003823"},{"id":"T2526","span":{"begin":59,"end":69},"obj":"http://purl.obolibrary.org/obo/GO_0003823"}],"text":"However, studies with antagonistic anti-CD40 or anti-CD154 antibodies led to the conclusion that CD40 signals may be important at the initial stages of arthritis induction, but are not required once disease is established and pathogenic antibodies are already present [11,12]."}

    GO-CC

    {"project":"GO-CC","denotations":[{"id":"T2539","span":{"begin":237,"end":247},"obj":"http://purl.obolibrary.org/obo/GO_0042571"},{"id":"T2538","span":{"begin":59,"end":69},"obj":"http://purl.obolibrary.org/obo/GO_0042571"},{"id":"T2536","span":{"begin":237,"end":247},"obj":"http://purl.obolibrary.org/obo/GO_0019815"},{"id":"T2535","span":{"begin":59,"end":69},"obj":"http://purl.obolibrary.org/obo/GO_0019815"}],"text":"However, studies with antagonistic anti-CD40 or anti-CD154 antibodies led to the conclusion that CD40 signals may be important at the initial stages of arthritis induction, but are not required once disease is established and pathogenic antibodies are already present [11,12]."}

    sentences

    {"project":"sentences","denotations":[{"id":"T1761","span":{"begin":0,"end":276},"obj":"Sentence"},{"id":"T26","span":{"begin":0,"end":276},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"However, studies with antagonistic anti-CD40 or anti-CD154 antibodies led to the conclusion that CD40 signals may be important at the initial stages of arthritis induction, but are not required once disease is established and pathogenic antibodies are already present [11,12]."}

    ICD10

    {"project":"ICD10","denotations":[{"id":"T2514","span":{"begin":152,"end":161},"obj":"http://purl.bioontology.org/ontology/ICD10/M13.9"}],"text":"However, studies with antagonistic anti-CD40 or anti-CD154 antibodies led to the conclusion that CD40 signals may be important at the initial stages of arthritis induction, but are not required once disease is established and pathogenic antibodies are already present [11,12]."}

    simple1

    {"project":"simple1","denotations":[{"id":"T2586","span":{"begin":97,"end":101},"obj":"Protein"}],"text":"However, studies with antagonistic anti-CD40 or anti-CD154 antibodies led to the conclusion that CD40 signals may be important at the initial stages of arthritis induction, but are not required once disease is established and pathogenic antibodies are already present [11,12]."}

    BioNLP16_DUT

    {"project":"BioNLP16_DUT","denotations":[{"id":"T3556","span":{"begin":97,"end":101},"obj":"Protein"}],"text":"However, studies with antagonistic anti-CD40 or anti-CD154 antibodies led to the conclusion that CD40 signals may be important at the initial stages of arthritis induction, but are not required once disease is established and pathogenic antibodies are already present [11,12]."}

    BioNLP16_Messiy

    {"project":"BioNLP16_Messiy","denotations":[{"id":"T3300","span":{"begin":97,"end":101},"obj":"Protein"}],"text":"However, studies with antagonistic anti-CD40 or anti-CD154 antibodies led to the conclusion that CD40 signals may be important at the initial stages of arthritis induction, but are not required once disease is established and pathogenic antibodies are already present [11,12]."}

    bionlp-st-ge-2016-test-ihmc

    {"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T3633","span":{"begin":226,"end":247},"obj":"Entity"},{"id":"T3632","span":{"begin":22,"end":44},"obj":"Protein"},{"id":"T3609","span":{"begin":92,"end":101},"obj":"Protein"},{"id":"T3607","span":{"begin":48,"end":69},"obj":"Entity"},{"id":"T3680","span":{"begin":48,"end":69},"obj":"Protein"}],"text":"However, studies with antagonistic anti-CD40 or anti-CD154 antibodies led to the conclusion that CD40 signals may be important at the initial stages of arthritis induction, but are not required once disease is established and pathogenic antibodies are already present [11,12]."}

    bionlp-st-ge-2016-test-tees

    {"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T3441","span":{"begin":97,"end":109},"obj":"Protein"},{"id":"T3440","span":{"begin":48,"end":69},"obj":"Protein"},{"id":"T3439","span":{"begin":40,"end":44},"obj":"Protein"}],"text":"However, studies with antagonistic anti-CD40 or anti-CD154 antibodies led to the conclusion that CD40 signals may be important at the initial stages of arthritis induction, but are not required once disease is established and pathogenic antibodies are already present [11,12]."}

    test3

    {"project":"test3","denotations":[{"id":"T1725","span":{"begin":97,"end":101},"obj":"Protein"},{"id":"T1692","span":{"begin":97,"end":101},"obj":"Protein"}],"text":"However, studies with antagonistic anti-CD40 or anti-CD154 antibodies led to the conclusion that CD40 signals may be important at the initial stages of arthritis induction, but are not required once disease is established and pathogenic antibodies are already present [11,12]."}