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PMC:3218875 / 4479-4755 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T1652 97-101 Protein denotes CD40

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2892 237-247 NNS denotes antibodies
T2891 226-236 JJ denotes pathogenic
T2890 222-225 CC denotes and
T2889 210-221 VBN denotes established
T2888 207-209 VBZ denotes is
T2887 199-206 NN denotes disease
T2886 194-198 RB denotes once
T2885 185-193 VBN denotes required
T2884 181-184 RB denotes not
T2883 177-180 VBP denotes are
T2882 173-176 CC denotes but
T2881 171-172 , denotes ,
T2880 162-171 NN denotes induction
T2879 152-161 NN denotes arthritis
T2878 149-151 IN denotes of
T2877 142-148 NNS denotes stages
T2876 134-141 JJ denotes initial
T2875 130-133 DT denotes the
T2874 127-129 IN denotes at
T2873 117-126 JJ denotes important
T2872 114-116 VB denotes be
T2871 110-113 MD denotes may
T2870 102-109 NNS denotes signals
T2869 97-101 NNP denotes CD40
T2868 92-96 WDT denotes that
T2867 81-91 NN denotes conclusion
T2866 77-80 DT denotes the
T2865 74-76 TO denotes to
T2864 70-73 VBD denotes led
T2863 59-69 NNS denotes antibodies
T2862 48-58 JJ denotes anti-CD154
T2861 45-47 CC denotes or
T2860 35-44 JJ denotes anti-CD40
T2859 22-34 JJ denotes antagonistic
T2858 17-21 IN denotes with
T2857 9-16 NNS denotes studies
T2856 7-8 , denotes ,
T2855 0-7 RB denotes However
T2899 275-276 . denotes .
T2898 274-275 NNP denotes ]
T2897 269-274 CD denotes 11,12
T2896 268-269 NNP denotes [
T2895 260-267 JJ denotes present
T2894 252-259 RB denotes already
T2893 248-251 VBP denotes are
R2234 T2855 T2864 advmod However,led
R2235 T2856 T2864 punct ",",led
R2236 T2857 T2864 nsubj studies,led
R2237 T2858 T2857 prep with,studies
R2238 T2859 T2863 amod antagonistic,antibodies
R2239 T2860 T2863 amod anti-CD40,antibodies
R2240 T2861 T2860 cc or,anti-CD40
R2241 T2862 T2860 conj anti-CD154,anti-CD40
R2242 T2863 T2858 pobj antibodies,with
R2244 T2864 T2864 ROOT led,led
R2246 T2865 T2864 prep to,led
R2249 T2866 T2867 det the,conclusion
R2253 T2867 T2865 pobj conclusion,to
R2257 T2868 T2872 mark that,be
R2261 T2869 T2870 compound CD40,signals
R2265 T2870 T2872 nsubj signals,be
R2269 T2871 T2872 aux may,be
R2273 T2872 T2867 acl be,conclusion
R2279 T2873 T2872 acomp important,be
R2282 T2874 T2872 prep at,be
R2287 T2875 T2877 det the,stages
R2288 T2876 T2877 amod initial,stages
R2290 T2877 T2874 pobj stages,at
R2294 T2878 T2877 prep of,stages
R2298 T2879 T2880 compound arthritis,induction
R2302 T2880 T2878 pobj induction,of
R2306 T2881 T2864 punct ",",led
R2309 T2882 T2864 cc but,led
R2314 T2883 T2885 auxpass are,required
R2318 T2884 T2885 neg not,required
R2321 T2885 T2864 conj required,led
R2328 T2886 T2889 mark once,established
R2333 T2887 T2889 nsubjpass disease,established
R2336 T2888 T2889 auxpass is,established
R2341 T2889 T2885 advcl established,required
R2345 T2890 T2889 cc and,established
R2348 T2891 T2889 conj pathogenic,established
R2352 T2892 T2893 nsubj antibodies,are
R2356 T2893 T2864 conj are,led
R2360 T2894 T2893 advmod already,are
R2364 T2895 T2893 acomp present,are
R2368 T2896 T2898 compound [,]
R2372 T2897 T2898 compound "11,12",]
R2374 T2898 T2893 attr ],are
R2375 T2899 T2893 punct .,are

DLUT931

Id Subject Object Predicate Lexical cue
T3372 97-101 Protein denotes CD40

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3284 53-58 http://www.uniprot.org/uniprot/P29965 denotes CD154
T3281 97-101 http://www.uniprot.org/uniprot/P25942 denotes CD40
T3280 40-44 http://www.uniprot.org/uniprot/P25942 denotes CD40

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T1829 97-101 Protein denotes CD40

2_test

Id Subject Object Predicate Lexical cue
21639951-7689748-4289437 269-271 7689748 denotes 11
21639951-11083282-4289438 272-274 11083282 denotes 12

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T2130 274-275 -RRB- denotes ]
T2129 269-274 CD denotes 11,12
T2128 268-269 -LRB- denotes [
T2127 260-267 JJ denotes present
T2126 252-259 RB denotes already
T2125 248-251 VB denotes are
T2124 237-247 NN denotes antibodies
T2123 226-236 JJ denotes pathogenic
T2122 222-225 CC denotes and
T2121 210-221 VB denotes established
T2120 207-209 VB denotes is
T2119 199-206 NN denotes disease
T2118 194-198 RB denotes once
T2117 185-193 VB denotes required
T2116 181-184 RB denotes not
T2115 177-180 VB denotes are
T2114 173-176 CC denotes but
T2113 171-172 -COMMA- denotes ,
T2112 162-171 NN denotes induction
T2111 152-161 NN denotes arthritis
T2110 149-151 IN denotes of
T2109 142-148 NN denotes stages
T2108 134-141 JJ denotes initial
T2107 130-133 DT denotes the
T2106 127-129 IN denotes at
T2105 117-126 JJ denotes important
T2104 114-116 VB denotes be
T2103 110-113 MD denotes may
T2102 102-109 NN denotes signals
T2101 97-101 NN denotes CD40
T2100 92-96 IN denotes that
T2099 81-91 NN denotes conclusion
T2098 77-80 DT denotes the
T2097 74-76 TO denotes to
T2096 70-73 VB denotes led
T2095 59-69 NN denotes antibodies
T2094 48-58 JJ denotes anti-CD154
T2093 45-47 CC denotes or
T2092 35-44 NN denotes anti-CD40
T2091 22-34 JJ denotes antagonistic
T2090 17-21 IN denotes with
T2089 9-16 NN denotes studies
T2088 7-8 -COMMA- denotes ,
T2087 0-7 RB denotes However
R1562 T2089 T2090 arg1Of studies,with
R1563 T2089 T2096 arg1Of studies,led
R1564 T2089 T2115 arg1Of studies,are
R1565 T2089 T2117 arg2Of studies,required
R1566 T2092 T2091 arg1Of anti-CD40,antagonistic
R1567 T2092 T2093 arg1Of anti-CD40,or
R1568 T2093 T2090 arg2Of or,with
R1569 T2095 T2093 arg2Of antibodies,or
R1570 T2095 T2094 arg1Of antibodies,anti-CD154
R1571 T2096 T2097 arg1Of led,to
R1572 T2096 T2114 arg1Of led,but
R1573 T2099 T2097 arg2Of conclusion,to
R1574 T2099 T2098 arg1Of conclusion,the
R1575 T2102 T2101 arg1Of signals,CD40
R1576 T2102 T2103 arg1Of signals,may
R1577 T2102 T2104 arg1Of signals,be
R1578 T2102 T2105 arg1Of signals,important
R1579 T2104 T2099 arg2Of be,conclusion
R1580 T2104 T2100 arg1Of be,that
R1581 T2104 T2103 arg2Of be,may
R1582 T2105 T2104 arg2Of important,be
R1583 T2105 T2106 arg1Of important,at
R1584 T2109 T2106 arg2Of stages,at
R1585 T2109 T2107 arg1Of stages,the
R1586 T2109 T2108 arg1Of stages,initial
R1587 T2109 T2110 arg1Of stages,of
R1588 T2112 T2110 arg2Of induction,of
R1589 T2112 T2111 arg1Of induction,arthritis
R1590 T2114 T2087 arg1Of but,However
R1591 T2114 T2088 arg1Of but,","
R1592 T2114 T2113 arg1Of but,","
R1593 T2117 T2114 arg2Of required,but
R1594 T2117 T2115 arg2Of required,are
R1595 T2117 T2116 arg1Of required,not
R1596 T2117 T2118 arg1Of required,once
R1597 T2119 T2120 arg1Of disease,is
R1598 T2119 T2121 arg2Of disease,established
R1599 T2121 T2120 arg2Of established,is
R1600 T2121 T2122 arg1Of established,and
R1601 T2122 T2118 arg2Of and,once
R1602 T2124 T2123 arg1Of antibodies,pathogenic
R1603 T2124 T2125 arg1Of antibodies,are
R1604 T2124 T2127 arg1Of antibodies,present
R1605 T2125 T2122 arg2Of are,and
R1606 T2125 T2126 arg1Of are,already
R1607 T2125 T2128 arg1Of are,[
R1608 T2127 T2125 arg2Of present,are
R1609 T2129 T2128 arg2Of "11,12",[
R1610 T2130 T2128 arg3Of ],[

GO-MF

Id Subject Object Predicate Lexical cue
T2527 237-247 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies
T2526 59-69 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies

GO-CC

Id Subject Object Predicate Lexical cue
T2539 237-247 http://purl.obolibrary.org/obo/GO_0042571 denotes antibodies
T2538 59-69 http://purl.obolibrary.org/obo/GO_0042571 denotes antibodies
T2536 237-247 http://purl.obolibrary.org/obo/GO_0019815 denotes antibodies
T2535 59-69 http://purl.obolibrary.org/obo/GO_0019815 denotes antibodies

sentences

Id Subject Object Predicate Lexical cue
T1761 0-276 Sentence denotes However, studies with antagonistic anti-CD40 or anti-CD154 antibodies led to the conclusion that CD40 signals may be important at the initial stages of arthritis induction, but are not required once disease is established and pathogenic antibodies are already present [11,12].
T26 0-276 Sentence denotes However, studies with antagonistic anti-CD40 or anti-CD154 antibodies led to the conclusion that CD40 signals may be important at the initial stages of arthritis induction, but are not required once disease is established and pathogenic antibodies are already present [11,12].

ICD10

Id Subject Object Predicate Lexical cue
T2514 152-161 http://purl.bioontology.org/ontology/ICD10/M13.9 denotes arthritis

simple1

Id Subject Object Predicate Lexical cue
T2586 97-101 Protein denotes CD40

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T3556 97-101 Protein denotes CD40

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T3300 97-101 Protein denotes CD40

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T3633 226-247 Entity denotes pathogenic antibodies
T3632 22-44 Protein denotes antagonistic anti-CD40
T3609 92-101 Protein denotes that CD40
T3607 48-69 Entity denotes anti-CD154 antibodies
T3680 48-69 Protein denotes anti-CD154 antibodies

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T3441 97-109 Protein denotes CD40 signals
T3440 48-69 Protein denotes anti-CD154 antibodies
T3439 40-44 Protein denotes CD40

test3

Id Subject Object Predicate Lexical cue
T1725 97-101 Protein denotes CD40
T1692 97-101 Protein denotes CD40