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PMC:3218875 / 3644-3902 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T1645 145-149 Protein denotes RANK
T1644 49-53 Protein denotes RANK
T1643 20-47 Protein denotes receptor activator of NF-κB
R1266 T1644 T1643 equivalentTo RANK,receptor activator of NF-κB

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2756 257-258 . denotes .
T2755 256-257 NNP denotes ]
T2754 255-256 CD denotes 7
T2753 254-255 NN denotes [
T2752 249-253 NN denotes loss
T2751 244-248 NN denotes bone
T2750 239-243 IN denotes with
T2749 228-238 VBN denotes associated
T2748 219-227 NNS denotes diseases
T2747 213-218 JJ denotes other
T2746 209-212 CC denotes and
T2745 199-208 NN denotes pathology
T2744 196-198 NNP denotes RA
T2743 193-195 IN denotes in
T2742 184-192 VBN denotes involved
T2741 181-183 VB denotes be
T2740 178-180 TO denotes to
T2739 171-177 JJ denotes likely
T2738 167-170 VBP denotes are
T2737 156-166 VBG denotes signalling
T2736 145-155 NN denotes RANK-NF-κB
T2735 138-144 JJ denotes proper
T2734 135-137 IN denotes in
T2733 127-134 NNS denotes defects
T2732 123-126 CC denotes and
T2731 121-122 , denotes ,
T2730 103-121 NN denotes osteoclastogenesis
T2729 99-102 IN denotes for
T2728 89-98 JJ denotes important
T2727 86-88 VBZ denotes is
T2726 84-85 , denotes ,
T2725 78-84 NN denotes member
T2724 71-77 NN denotes family
T2723 62-70 NN denotes receptor
T2722 58-61 NNP denotes TNF
T2721 56-57 DT denotes a
T2720 54-55 , denotes ,
T2719 53-54 -RRB- denotes )
T2718 49-53 NNP denotes RANK
T2717 48-49 -LRB- denotes (
T2716 42-47 NNP denotes NF-κB
T2715 39-41 IN denotes of
T2714 29-38 NN denotes activator
T2713 20-28 NN denotes receptor
T2712 17-19 IN denotes by
T2711 6-16 NN denotes activation
T2710 0-5 JJ denotes NF-κB
R2089 T2710 T2711 amod NF-κB,activation
R2090 T2711 T2727 nsubj activation,is
R2091 T2712 T2711 prep by,activation
R2092 T2713 T2712 pobj receptor,by
R2093 T2714 T2711 conj activator,activation
R2094 T2715 T2711 prep of,activation
R2095 T2716 T2715 pobj NF-κB,of
R2096 T2717 T2716 punct (,NF-κB
R2097 T2718 T2716 appos RANK,NF-κB
R2098 T2719 T2716 punct ),NF-κB
R2099 T2720 T2716 punct ",",NF-κB
R2100 T2721 T2725 det a,member
R2101 T2722 T2725 compound TNF,member
R2102 T2723 T2725 compound receptor,member
R2103 T2724 T2725 compound family,member
R2104 T2725 T2716 appos member,NF-κB
R2105 T2726 T2727 punct ",",is
R2106 T2727 T2727 ROOT is,is
R2107 T2728 T2727 acomp important,is
R2108 T2729 T2728 prep for,important
R2109 T2730 T2729 pobj osteoclastogenesis,for
R2110 T2731 T2729 punct ",",for
R2111 T2732 T2728 cc and,important
R2112 T2733 T2728 conj defects,important
R2113 T2734 T2727 prep in,is
R2114 T2735 T2736 amod proper,RANK-NF-κB
R2115 T2736 T2734 pobj RANK-NF-κB,in
R2116 T2737 T2738 nsubj signalling,are
R2117 T2738 T2727 conj are,is
R2118 T2739 T2738 acomp likely,are
R2119 T2740 T2742 aux to,involved
R2120 T2741 T2742 auxpass be,involved
R2121 T2742 T2739 xcomp involved,likely
R2122 T2743 T2742 prep in,involved
R2123 T2744 T2745 compound RA,pathology
R2124 T2745 T2743 pobj pathology,in
R2125 T2746 T2745 cc and,pathology
R2126 T2747 T2748 amod other,diseases
R2127 T2748 T2745 conj diseases,pathology
R2128 T2749 T2748 acl associated,diseases
R2129 T2750 T2749 prep with,associated
R2130 T2751 T2752 compound bone,loss
R2131 T2752 T2753 compound loss,[
R2132 T2753 T2755 compound [,]
R2133 T2754 T2755 nummod 7,]
R2134 T2755 T2750 pobj ],with
R2135 T2756 T2738 punct .,are

DLUT931

Id Subject Object Predicate Lexical cue
T3390 6-16 Positive_regulation denotes activation
T3365 145-149 Protein denotes RANK
T3364 49-53 Protein denotes RANK
T3363 20-47 Protein denotes receptor activator of NF-κB
R2683 T3363 T3390 themeOf receptor activator of NF-κB,activation

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3274 58-61 http://www.uniprot.org/uniprot/P01375 denotes TNF

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T1822 145-149 Protein denotes RANK
T1821 49-53 Protein denotes RANK
T1820 20-47 Protein denotes receptor activator of NF-κB

2_test

Id Subject Object Predicate Lexical cue
21639951-16356770-4289435 255-256 16356770 denotes 7

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1991 256-257 -RRB- denotes ]
T1990 255-256 CD denotes 7
T1989 254-255 -LRB- denotes [
T1988 249-253 NN denotes loss
T1987 244-248 NN denotes bone
T1986 239-243 IN denotes with
T1985 228-238 VB denotes associated
T1984 219-227 NN denotes diseases
T1983 213-218 JJ denotes other
T1982 209-212 CC denotes and
T1981 199-208 NN denotes pathology
T1980 196-198 NN denotes RA
T1979 193-195 IN denotes in
T1978 184-192 VB denotes involved
T1977 181-183 VB denotes be
T1976 178-180 TO denotes to
T1975 171-177 JJ denotes likely
T1974 167-170 VB denotes are
T1973 156-166 NN denotes signalling
T1972 145-155 NN denotes RANK-NF-κB
T1971 138-144 JJ denotes proper
T1970 135-137 IN denotes in
T1969 127-134 NN denotes defects
T1968 123-126 CC denotes and
T1967 121-122 -COMMA- denotes ,
T1966 103-121 NN denotes osteoclastogenesis
T1965 99-102 IN denotes for
T1964 89-98 JJ denotes important
T1963 86-88 VB denotes is
T1962 84-85 -COMMA- denotes ,
T1961 78-84 NN denotes member
T1960 71-77 NN denotes family
T1959 62-70 NN denotes receptor
T1958 58-61 NN denotes TNF
T1957 56-57 DT denotes a
T1956 54-55 -COMMA- denotes ,
T1955 53-54 -RRB- denotes )
T1954 49-53 NN denotes RANK
T1953 48-49 -LRB- denotes (
T1952 42-47 NN denotes NF-κB
T1951 39-41 IN denotes of
T1950 29-38 NN denotes activator
T1949 20-28 NN denotes receptor
T1948 17-19 IN denotes by
T1947 6-16 NN denotes activation
T1946 0-5 NN denotes NF-κB
R1414 T1947 T1946 arg1Of activation,NF-κB
R1415 T1947 T1948 arg1Of activation,by
R1416 T1947 T1963 arg1Of activation,is
R1417 T1947 T1964 arg1Of activation,important
R1418 T1950 T1948 arg2Of activator,by
R1419 T1950 T1949 arg1Of activator,receptor
R1420 T1950 T1951 arg1Of activator,of
R1421 T1952 T1951 arg2Of NF-κB,of
R1422 T1952 T1953 arg1Of NF-κB,(
R1423 T1952 T1956 arg1Of NF-κB,","
R1424 T1954 T1953 arg2Of RANK,(
R1425 T1955 T1953 arg3Of ),(
R1426 T1961 T1956 arg2Of member,","
R1427 T1961 T1957 arg1Of member,a
R1428 T1961 T1958 arg1Of member,TNF
R1429 T1961 T1959 arg1Of member,receptor
R1430 T1961 T1960 arg1Of member,family
R1431 T1963 T1962 arg1Of is,","
R1432 T1963 T1968 arg1Of is,and
R1433 T1964 T1963 arg2Of important,is
R1434 T1964 T1965 arg1Of important,for
R1435 T1966 T1965 arg2Of osteoclastogenesis,for
R1436 T1968 T1967 arg1Of and,","
R1437 T1969 T1970 arg1Of defects,in
R1438 T1969 T1974 arg1Of defects,are
R1439 T1969 T1975 arg1Of defects,likely
R1440 T1969 T1977 arg1Of defects,be
R1441 T1969 T1978 arg2Of defects,involved
R1442 T1973 T1970 arg2Of signalling,in
R1443 T1973 T1971 arg1Of signalling,proper
R1444 T1973 T1972 arg1Of signalling,RANK-NF-κB
R1445 T1974 T1968 arg2Of are,and
R1446 T1975 T1974 arg2Of likely,are
R1447 T1978 T1975 arg2Of involved,likely
R1448 T1978 T1976 arg1Of involved,to
R1449 T1978 T1977 arg2Of involved,be
R1450 T1978 T1979 arg1Of involved,in
R1451 T1981 T1980 arg1Of pathology,RA
R1452 T1981 T1982 arg1Of pathology,and
R1453 T1982 T1979 arg2Of and,in
R1454 T1982 T1985 arg2Of and,associated
R1455 T1984 T1982 arg2Of diseases,and
R1456 T1984 T1983 arg1Of diseases,other
R1457 T1985 T1986 arg1Of associated,with
R1458 T1988 T1986 arg2Of loss,with
R1459 T1988 T1987 arg1Of loss,bone
R1460 T1988 T1989 arg1Of loss,[
R1461 T1990 T1989 arg2Of 7,[
R1462 T1991 T1989 arg3Of ],[

GO-BP

Id Subject Object Predicate Lexical cue
T2503 156-166 http://purl.obolibrary.org/obo/GO_0023052 denotes signalling
T2502 150-166 http://purl.obolibrary.org/obo/GO_0038061 denotes NF-κB signalling
T2499 0-16 http://purl.obolibrary.org/obo/GO_0051092 denotes NF-κB activation

sentences

Id Subject Object Predicate Lexical cue
T1758 0-258 Sentence denotes NF-κB activation by receptor activator of NF-κB (RANK), a TNF receptor family member, is important for osteoclastogenesis, and defects in proper RANK-NF-κB signalling are likely to be involved in RA pathology and other diseases associated with bone loss [7].
T23 0-258 Sentence denotes NF-κB activation by receptor activator of NF-κB (RANK), a TNF receptor family member, is important for osteoclastogenesis, and defects in proper RANK-NF-κB signalling are likely to be involved in RA pathology and other diseases associated with bone loss [7].

simple1

Id Subject Object Predicate Lexical cue
T2579 145-149 Protein denotes RANK
T2578 49-53 Protein denotes RANK
T2577 20-47 Protein denotes receptor activator of NF-κB

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T3549 145-149 Protein denotes RANK
T3548 49-53 Protein denotes RANK
T3547 20-47 Protein denotes receptor activator of NF-κB

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T3293 145-149 Protein denotes RANK
T3292 49-53 Protein denotes RANK
T3291 20-47 Protein denotes receptor activator of NF-κB

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T3693 0-85 Positive_regulation denotes NF-κB activation by receptor activator of NF-κB (RANK), a TNF receptor family member,
T3689 58-61 Protein denotes TNF
T3635 62-70 Protein denotes receptor
T3628 42-54 Protein denotes NF-κB (RANK)
T3604 49-53 Protein denotes RANK
T3590 138-166 Protein denotes proper RANK-NF-κB signalling
T3584 17-38 Protein denotes by receptor activator
T3682 196-208 Protein denotes RA pathology
T3678 138-166 Protein denotes proper RANK-NF-κB signalling
T3667 0-5 Protein denotes NF-κB
R2747 T3584 T3693 causeOf by receptor activator,"NF-κB activation by receptor activator of NF-κB (RANK), a TNF receptor family member,"
R2774 T3667 T3693 themeOf NF-κB,"NF-κB activation by receptor activator of NF-κB (RANK), a TNF receptor family member,"

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T3343 58-84 Protein denotes TNF receptor family member
T3342 49-53 Protein denotes RANK
T3341 42-47 Protein denotes NF-κB
T3340 0-5 Protein denotes NF-κB
T3346 6-16 Positive_regulation denotes activation
T3345 6-16 Positive_regulation denotes activation
T3344 145-155 Protein denotes RANK-NF-κB
R2656 T3340 T3345 themeOf NF-κB,activation
R2658 T3343 T3346 themeOf TNF receptor family member,activation

test3

Id Subject Object Predicate Lexical cue
T1715 145-149 Protein denotes RANK
T1714 49-53 Protein denotes RANK
T1713 20-47 Protein denotes receptor activator of NF-κB
T1685 145-149 Protein denotes RANK
T1684 49-53 Protein denotes RANK
T1683 20-47 Protein denotes receptor activator of NF-κB
R1282 T1714 T1713 equivalentTo RANK,receptor activator of NF-κB
R1283 T1715 T1714 themeOf RANK,RANK