PMC:3218875 / 1865-1975 JSONTXT

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/3218875","sourcedb":"PMC","sourceid":"3218875","source_url":"http://www.ncbi.nlm.nih.gov/pmc/3218875","text":"of genes - such as TNF, IL-1, IL-6, cyclo-oxygenase-2, chemokines, inducible nitric oxide synthase, and matrix","tracks":[{"project":"testone","denotations":[{"id":"T270","span":{"begin":67,"end":98},"obj":"Protein"},{"id":"T269","span":{"begin":36,"end":53},"obj":"Protein"},{"id":"T268","span":{"begin":30,"end":34},"obj":"Protein"},{"id":"T267","span":{"begin":19,"end":22},"obj":"Protein"}],"attributes":[{"subj":"T270","pred":"source","obj":"testone"},{"subj":"T269","pred":"source","obj":"testone"},{"subj":"T268","pred":"source","obj":"testone"},{"subj":"T267","pred":"source","obj":"testone"}]},{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T1051","span":{"begin":104,"end":110},"obj":"NN"},{"id":"T1050","span":{"begin":100,"end":103},"obj":"CC"},{"id":"T1049","span":{"begin":98,"end":99},"obj":","},{"id":"T1048","span":{"begin":90,"end":98},"obj":"NN"},{"id":"T1047","span":{"begin":84,"end":89},"obj":"NN"},{"id":"T1046","span":{"begin":77,"end":83},"obj":"JJ"},{"id":"T1045","span":{"begin":67,"end":76},"obj":"JJ"},{"id":"T1044","span":{"begin":65,"end":66},"obj":","},{"id":"T1043","span":{"begin":55,"end":65},"obj":"NNS"},{"id":"T1042","span":{"begin":53,"end":54},"obj":","},{"id":"T1041","span":{"begin":36,"end":53},"obj":"JJ"},{"id":"T1040","span":{"begin":34,"end":35},"obj":","},{"id":"T1039","span":{"begin":30,"end":34},"obj":"NNP"},{"id":"T1038","span":{"begin":28,"end":29},"obj":","},{"id":"T1037","span":{"begin":24,"end":28},"obj":"NNP"},{"id":"T1036","span":{"begin":22,"end":23},"obj":","},{"id":"T1035","span":{"begin":19,"end":22},"obj":"NNP"},{"id":"T1034","span":{"begin":16,"end":18},"obj":"IN"},{"id":"T1033","span":{"begin":11,"end":15},"obj":"JJ"},{"id":"T1032","span":{"begin":9,"end":10},"obj":":"},{"id":"T1031","span":{"begin":3,"end":8},"obj":"NNS"},{"id":"T1030","span":{"begin":0,"end":2},"obj":"IN"}],"relations":[{"id":"R841","pred":"pobj","subj":"T1031","obj":"T1030"},{"id":"R842","pred":"punct","subj":"T1032","obj":"T1031"},{"id":"R843","pred":"amod","subj":"T1033","obj":"T1034"},{"id":"R844","pred":"prep","subj":"T1034","obj":"T1031"},{"id":"R845","pred":"pobj","subj":"T1035","obj":"T1034"},{"id":"R846","pred":"punct","subj":"T1036","obj":"T1035"},{"id":"R847","pred":"conj","subj":"T1037","obj":"T1035"},{"id":"R848","pred":"punct","subj":"T1038","obj":"T1037"},{"id":"R849","pred":"conj","subj":"T1039","obj":"T1037"},{"id":"R850","pred":"punct","subj":"T1040","obj":"T1039"},{"id":"R851","pred":"conj","subj":"T1041","obj":"T1039"},{"id":"R852","pred":"punct","subj":"T1042","obj":"T1041"},{"id":"R853","pred":"conj","subj":"T1043","obj":"T1041"},{"id":"R854","pred":"punct","subj":"T1044","obj":"T1043"},{"id":"R855","pred":"amod","subj":"T1045","obj":"T1048"},{"id":"R856","pred":"amod","subj":"T1046","obj":"T1047"},{"id":"R857","pred":"compound","subj":"T1047","obj":"T1048"},{"id":"R858","pred":"conj","subj":"T1048","obj":"T1043"},{"id":"R859","pred":"punct","subj":"T1049","obj":"T1048"},{"id":"R860","pred":"cc","subj":"T1050","obj":"T1048"}],"attributes":[{"subj":"T1051","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T1050","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T1049","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T1048","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T1047","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T1046","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T1045","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T1044","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T1043","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T1042","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T1041","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T1040","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T1039","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T1038","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T1037","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T1036","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T1035","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T1034","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T1033","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T1032","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T1031","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T1030","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"}]},{"project":"DLUT931","denotations":[{"id":"T1393","span":{"begin":19,"end":22},"obj":"Protein"},{"id":"T1385","span":{"begin":67,"end":98},"obj":"Protein"},{"id":"T1384","span":{"begin":36,"end":53},"obj":"Protein"},{"id":"T1383","span":{"begin":30,"end":34},"obj":"Protein"}],"attributes":[{"subj":"T1393","pred":"source","obj":"DLUT931"},{"subj":"T1385","pred":"source","obj":"DLUT931"},{"subj":"T1384","pred":"source","obj":"DLUT931"},{"subj":"T1383","pred":"source","obj":"DLUT931"}]},{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T1276","span":{"begin":30,"end":34},"obj":"http://www.uniprot.org/uniprot/P05231"},{"id":"T1274","span":{"begin":19,"end":22},"obj":"http://www.uniprot.org/uniprot/P01375"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"attributes":[{"subj":"T1276","pred":"source","obj":"bionlp-st-ge-2016-uniprot"},{"subj":"T1274","pred":"source","obj":"bionlp-st-ge-2016-uniprot"}]},{"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T366","span":{"begin":67,"end":98},"obj":"Protein"},{"id":"T365","span":{"begin":36,"end":53},"obj":"Protein"},{"id":"T364","span":{"begin":30,"end":34},"obj":"Protein"},{"id":"T363","span":{"begin":19,"end":22},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"attributes":[{"subj":"T366","pred":"source","obj":"bionlp-st-ge-2016-test-proteins"},{"subj":"T365","pred":"source","obj":"bionlp-st-ge-2016-test-proteins"},{"subj":"T364","pred":"source","obj":"bionlp-st-ge-2016-test-proteins"},{"subj":"T363","pred":"source","obj":"bionlp-st-ge-2016-test-proteins"}]},{"project":"pmc-enju-pas","denotations":[{"id":"T588","span":{"begin":104,"end":110},"obj":"NN"},{"id":"T587","span":{"begin":100,"end":103},"obj":"CC"},{"id":"T586","span":{"begin":98,"end":99},"obj":"-COMMA-"},{"id":"T585","span":{"begin":90,"end":98},"obj":"NN"},{"id":"T584","span":{"begin":84,"end":89},"obj":"NN"},{"id":"T583","span":{"begin":77,"end":83},"obj":"JJ"},{"id":"T582","span":{"begin":67,"end":76},"obj":"JJ"},{"id":"T581","span":{"begin":65,"end":66},"obj":"-COMMA-"},{"id":"T580","span":{"begin":55,"end":65},"obj":"NN"},{"id":"T579","span":{"begin":53,"end":54},"obj":"-COMMA-"},{"id":"T578","span":{"begin":36,"end":53},"obj":"NN"},{"id":"T577","span":{"begin":34,"end":35},"obj":"-COMMA-"},{"id":"T576","span":{"begin":30,"end":34},"obj":"NN"},{"id":"T575","span":{"begin":28,"end":29},"obj":"-COMMA-"},{"id":"T574","span":{"begin":24,"end":28},"obj":"NN"},{"id":"T573","span":{"begin":22,"end":23},"obj":"-COMMA-"},{"id":"T572","span":{"begin":19,"end":22},"obj":"NN"},{"id":"T571","span":{"begin":16,"end":18},"obj":"IN"},{"id":"T570","span":{"begin":11,"end":15},"obj":"JJ"},{"id":"T569","span":{"begin":9,"end":10},"obj":"-COLON-"},{"id":"T568","span":{"begin":3,"end":8},"obj":"NN"},{"id":"T567","span":{"begin":0,"end":2},"obj":"IN"}],"relations":[{"id":"R435","pred":"arg2Of","subj":"T568","obj":"T567"},{"id":"R436","pred":"arg1Of","subj":"T571","obj":"T570"},{"id":"R437","pred":"arg1Of","subj":"T572","obj":"T573"},{"id":"R438","pred":"arg1Of","subj":"T573","obj":"T575"},{"id":"R439","pred":"arg2Of","subj":"T574","obj":"T573"},{"id":"R440","pred":"arg1Of","subj":"T575","obj":"T577"},{"id":"R441","pred":"arg2Of","subj":"T576","obj":"T575"},{"id":"R442","pred":"arg1Of","subj":"T577","obj":"T579"},{"id":"R443","pred":"arg2Of","subj":"T578","obj":"T577"},{"id":"R444","pred":"arg1Of","subj":"T579","obj":"T581"},{"id":"R445","pred":"arg2Of","subj":"T580","obj":"T579"},{"id":"R446","pred":"arg1Of","subj":"T581","obj":"T587"},{"id":"R447","pred":"arg2Of","subj":"T585","obj":"T581"},{"id":"R448","pred":"arg1Of","subj":"T585","obj":"T582"},{"id":"R449","pred":"arg1Of","subj":"T585","obj":"T583"},{"id":"R450","pred":"arg1Of","subj":"T585","obj":"T584"},{"id":"R451","pred":"arg2Of","subj":"T587","obj":"T571"},{"id":"R452","pred":"arg1Of","subj":"T587","obj":"T586"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"attributes":[{"subj":"T588","pred":"source","obj":"pmc-enju-pas"},{"subj":"T587","pred":"source","obj":"pmc-enju-pas"},{"subj":"T586","pred":"source","obj":"pmc-enju-pas"},{"subj":"T585","pred":"source","obj":"pmc-enju-pas"},{"subj":"T584","pred":"source","obj":"pmc-enju-pas"},{"subj":"T583","pred":"source","obj":"pmc-enju-pas"},{"subj":"T582","pred":"source","obj":"pmc-enju-pas"},{"subj":"T581","pred":"source","obj":"pmc-enju-pas"},{"subj":"T580","pred":"source","obj":"pmc-enju-pas"},{"subj":"T579","pred":"source","obj":"pmc-enju-pas"},{"subj":"T578","pred":"source","obj":"pmc-enju-pas"},{"subj":"T577","pred":"source","obj":"pmc-enju-pas"},{"subj":"T576","pred":"source","obj":"pmc-enju-pas"},{"subj":"T575","pred":"source","obj":"pmc-enju-pas"},{"subj":"T574","pred":"source","obj":"pmc-enju-pas"},{"subj":"T573","pred":"source","obj":"pmc-enju-pas"},{"subj":"T572","pred":"source","obj":"pmc-enju-pas"},{"subj":"T571","pred":"source","obj":"pmc-enju-pas"},{"subj":"T570","pred":"source","obj":"pmc-enju-pas"},{"subj":"T569","pred":"source","obj":"pmc-enju-pas"},{"subj":"T568","pred":"source","obj":"pmc-enju-pas"},{"subj":"T567","pred":"source","obj":"pmc-enju-pas"}]},{"project":"GO-BP","denotations":[{"id":"T794","span":{"begin":77,"end":98},"obj":"http://purl.obolibrary.org/obo/GO_0051001"},{"id":"T793","span":{"begin":77,"end":98},"obj":"http://purl.obolibrary.org/obo/GO_0050999"},{"id":"T792","span":{"begin":77,"end":98},"obj":"http://purl.obolibrary.org/obo/GO_0051000"},{"id":"T791","span":{"begin":77,"end":98},"obj":"http://purl.obolibrary.org/obo/GO_0004517"},{"id":"T790","span":{"begin":42,"end":51},"obj":"http://purl.obolibrary.org/obo/GO_0016701"}],"attributes":[{"subj":"T794","pred":"source","obj":"GO-BP"},{"subj":"T793","pred":"source","obj":"GO-BP"},{"subj":"T792","pred":"source","obj":"GO-BP"},{"subj":"T791","pred":"source","obj":"GO-BP"},{"subj":"T790","pred":"source","obj":"GO-BP"}]},{"project":"GO-MF","denotations":[{"id":"T809","span":{"begin":77,"end":98},"obj":"http://purl.obolibrary.org/obo/GO_0050998"},{"id":"T808","span":{"begin":77,"end":98},"obj":"http://purl.obolibrary.org/obo/GO_0004517"},{"id":"T807","span":{"begin":42,"end":51},"obj":"http://purl.obolibrary.org/obo/GO_0016701"},{"id":"T806","span":{"begin":30,"end":34},"obj":"http://purl.obolibrary.org/obo/GO_0005138"},{"id":"T804","span":{"begin":24,"end":28},"obj":"http://purl.obolibrary.org/obo/GO_0005149"}],"attributes":[{"subj":"T809","pred":"source","obj":"GO-MF"},{"subj":"T808","pred":"source","obj":"GO-MF"},{"subj":"T807","pred":"source","obj":"GO-MF"},{"subj":"T806","pred":"source","obj":"GO-MF"},{"subj":"T804","pred":"source","obj":"GO-MF"}]},{"project":"simple1","denotations":[{"id":"T824","span":{"begin":67,"end":98},"obj":"Protein"},{"id":"T823","span":{"begin":36,"end":53},"obj":"Protein"},{"id":"T822","span":{"begin":30,"end":34},"obj":"Protein"},{"id":"T821","span":{"begin":19,"end":22},"obj":"Protein"}],"attributes":[{"subj":"T824","pred":"source","obj":"simple1"},{"subj":"T823","pred":"source","obj":"simple1"},{"subj":"T822","pred":"source","obj":"simple1"},{"subj":"T821","pred":"source","obj":"simple1"}]},{"project":"BioNLP16_DUT","denotations":[{"id":"T1517","span":{"begin":19,"end":22},"obj":"Protein"},{"id":"T1509","span":{"begin":67,"end":98},"obj":"Protein"},{"id":"T1508","span":{"begin":36,"end":53},"obj":"Protein"},{"id":"T1507","span":{"begin":30,"end":34},"obj":"Protein"}],"attributes":[{"subj":"T1517","pred":"source","obj":"BioNLP16_DUT"},{"subj":"T1509","pred":"source","obj":"BioNLP16_DUT"},{"subj":"T1508","pred":"source","obj":"BioNLP16_DUT"},{"subj":"T1507","pred":"source","obj":"BioNLP16_DUT"}]},{"project":"BioNLP16_Messiy","denotations":[{"id":"T1290","span":{"begin":19,"end":22},"obj":"Protein"},{"id":"T1282","span":{"begin":67,"end":98},"obj":"Protein"},{"id":"T1281","span":{"begin":36,"end":53},"obj":"Protein"},{"id":"T1280","span":{"begin":30,"end":34},"obj":"Protein"}],"attributes":[{"subj":"T1290","pred":"source","obj":"BioNLP16_Messiy"},{"subj":"T1282","pred":"source","obj":"BioNLP16_Messiy"},{"subj":"T1281","pred":"source","obj":"BioNLP16_Messiy"},{"subj":"T1280","pred":"source","obj":"BioNLP16_Messiy"}]},{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T1576","span":{"begin":67,"end":99},"obj":"Protein"},{"id":"T1571","span":{"begin":3,"end":18},"obj":"Protein"},{"id":"T1569","span":{"begin":24,"end":28},"obj":"Protein"},{"id":"T1553","span":{"begin":19,"end":29},"obj":"Protein"},{"id":"T1548","span":{"begin":0,"end":110},"obj":"Protein"},{"id":"T1542","span":{"begin":36,"end":53},"obj":"Protein"},{"id":"T1529","span":{"begin":30,"end":54},"obj":"Protein"}],"attributes":[{"subj":"T1576","pred":"source","obj":"bionlp-st-ge-2016-test-ihmc"},{"subj":"T1571","pred":"source","obj":"bionlp-st-ge-2016-test-ihmc"},{"subj":"T1569","pred":"source","obj":"bionlp-st-ge-2016-test-ihmc"},{"subj":"T1553","pred":"source","obj":"bionlp-st-ge-2016-test-ihmc"},{"subj":"T1548","pred":"source","obj":"bionlp-st-ge-2016-test-ihmc"},{"subj":"T1542","pred":"source","obj":"bionlp-st-ge-2016-test-ihmc"},{"subj":"T1529","pred":"source","obj":"bionlp-st-ge-2016-test-ihmc"}]},{"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T1313","span":{"begin":36,"end":53},"obj":"Protein"},{"id":"T1312","span":{"begin":30,"end":34},"obj":"Protein"},{"id":"T1311","span":{"begin":24,"end":28},"obj":"Protein"},{"id":"T1310","span":{"begin":19,"end":22},"obj":"Protein"},{"id":"T1322","span":{"begin":67,"end":76},"obj":"Positive_regulation"},{"id":"T1314","span":{"begin":77,"end":98},"obj":"Protein"}],"relations":[{"id":"R1065","pred":"themeOf","subj":"T1314","obj":"T1322"}],"attributes":[{"subj":"T1313","pred":"source","obj":"bionlp-st-ge-2016-test-tees"},{"subj":"T1312","pred":"source","obj":"bionlp-st-ge-2016-test-tees"},{"subj":"T1311","pred":"source","obj":"bionlp-st-ge-2016-test-tees"},{"subj":"T1310","pred":"source","obj":"bionlp-st-ge-2016-test-tees"},{"subj":"T1322","pred":"source","obj":"bionlp-st-ge-2016-test-tees"},{"subj":"T1314","pred":"source","obj":"bionlp-st-ge-2016-test-tees"}]},{"project":"test3","denotations":[{"id":"T313","span":{"begin":67,"end":98},"obj":"Protein"},{"id":"T312","span":{"begin":36,"end":53},"obj":"Protein"},{"id":"T311","span":{"begin":30,"end":34},"obj":"Protein"},{"id":"T310","span":{"begin":19,"end":22},"obj":"Protein"},{"id":"T292","span":{"begin":67,"end":98},"obj":"Protein"},{"id":"T291","span":{"begin":36,"end":53},"obj":"Protein"},{"id":"T290","span":{"begin":30,"end":34},"obj":"Protein"},{"id":"T289","span":{"begin":19,"end":22},"obj":"Protein"}],"attributes":[{"subj":"T313","pred":"source","obj":"test3"},{"subj":"T312","pred":"source","obj":"test3"},{"subj":"T311","pred":"source","obj":"test3"},{"subj":"T310","pred":"source","obj":"test3"},{"subj":"T292","pred":"source","obj":"test3"},{"subj":"T291","pred":"source","obj":"test3"},{"subj":"T290","pred":"source","obj":"test3"},{"subj":"T289","pred":"source","obj":"test3"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"testone","color":"#93baec","default":true},{"id":"bionlp-st-ge-2016-spacy-parsed","color":"#d4ec93"},{"id":"DLUT931","color":"#ea93ec"},{"id":"bionlp-st-ge-2016-uniprot","color":"#93ecd0"},{"id":"bionlp-st-ge-2016-test-proteins","color":"#ecb693"},{"id":"pmc-enju-pas","color":"#9c93ec"},{"id":"GO-BP","color":"#a4ec93"},{"id":"GO-MF","color":"#ec93be"},{"id":"simple1","color":"#93d8ec"},{"id":"BioNLP16_DUT","color":"#ece693"},{"id":"BioNLP16_Messiy","color":"#cc93ec"},{"id":"bionlp-st-ge-2016-test-ihmc","color":"#93ecb2"},{"id":"bionlp-st-ge-2016-test-tees","color":"#ec9893"},{"id":"test3","color":"#93a7ec"}]}]}}