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PMC:3218875 / 14831-15166 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T21316 312-334 Protein denotes tumour necrosis factor
T21315 307-310 Protein denotes TNF
T21314 240-267 Protein denotes receptor activator of NF-κB
T21313 234-238 Protein denotes RANK
T21312 15-20 Protein denotes TRAF1
T21311 8-13 Protein denotes TRAF3

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T22073 334-335 . denotes .
T22072 328-334 NN denotes factor
T22071 319-327 NN denotes necrosis
T22070 312-318 NN denotes tumour
T22069 310-311 , denotes ,
T22068 307-310 NNP denotes TNF
T22067 305-306 : denotes ;
T22066 299-305 NN denotes factor
T22065 279-298 VBD denotes receptor-associated
T22064 275-278 NNP denotes TNF
T22063 273-274 , denotes ,
T22062 269-273 NNP denotes TRAF
T22061 267-268 : denotes ;
T22060 262-267 NN denotes NF-κB
T22059 259-261 IN denotes of
T22058 249-258 NN denotes activator
T22057 240-248 NN denotes receptor
T22056 238-239 , denotes ,
T22055 234-238 NNP denotes RANK
T22054 232-233 : denotes ;
T22053 226-232 NN denotes factor
T22052 218-225 JJ denotes nuclear
T22051 216-217 , denotes ,
T22050 214-216 NNP denotes NF
T22049 212-213 : denotes ;
T22048 206-212 NN denotes kinase
T22047 202-205 NNP denotes IκB
T22046 200-201 , denotes ,
T22045 197-200 NNP denotes IKK
T22044 195-196 : denotes ;
T22043 186-195 NN denotes apoptosis
T22042 183-185 IN denotes of
T22041 173-182 NN denotes inhibitor
T22040 164-172 JJ denotes cellular
T22039 162-163 , denotes ,
T22038 158-162 NNP denotes cIAP
T22037 156-157 . denotes .
T22036 149-156 NNS denotes factors
T22035 129-148 JJ denotes receptor-associated
T22034 125-128 NNP denotes TNF
T22033 119-124 JJ denotes other
T22032 114-118 IN denotes with
T22031 104-113 VBG denotes competing
T22030 101-103 IN denotes by
T22029 92-100 RB denotes probably
T22028 87-91 JJS denotes most
T22027 85-86 , denotes ,
T22026 78-85 NN denotes pathway
T22025 73-77 DT denotes this
T22024 70-72 IN denotes of
T22023 60-69 NN denotes regulator
T22022 51-59 JJ denotes negative
T22021 49-50 DT denotes a
T22020 46-48 IN denotes as
T22019 35-45 VBN denotes identified
T22018 30-34 VBN denotes been
T22017 25-29 RB denotes also
T22016 21-24 VBZ denotes has
T22015 15-20 CD denotes TRAF1
T22014 13-14 , denotes ,
T22013 8-13 CD denotes TRAF3
T22012 5-7 TO denotes to
T22011 0-4 JJ denotes Next
R14383 T22011 T22019 advmod Next,identified
R14384 T22012 T22011 prep to,Next
R14385 T22013 T22012 pobj TRAF3,to
R14386 T22014 T22019 punct ",",identified
R14387 T22015 T22019 nsubjpass TRAF1,identified
R14388 T22016 T22019 aux has,identified
R14389 T22017 T22019 advmod also,identified
R14390 T22018 T22019 auxpass been,identified
R14391 T22019 T22019 ROOT identified,identified
R14392 T22020 T22019 prep as,identified
R14393 T22021 T22023 det a,regulator
R14394 T22022 T22023 amod negative,regulator
R14395 T22023 T22020 pobj regulator,as
R14396 T22024 T22023 prep of,regulator
R14397 T22025 T22026 det this,pathway
R14398 T22026 T22024 pobj pathway,of
R14399 T22027 T22023 punct ",",regulator
R14400 T22028 T22029 advmod most,probably
R14401 T22029 T22030 advmod probably,by
R14402 T22030 T22019 agent by,identified
R14403 T22031 T22030 pcomp competing,by
R14404 T22032 T22031 prep with,competing
R14405 T22033 T22036 amod other,factors
R14406 T22034 T22036 nmod TNF,factors
R14407 T22035 T22036 amod receptor-associated,factors
R14408 T22036 T22032 pobj factors,with
R14409 T22037 T22019 punct .,identified
R14410 T22038 T22038 ROOT cIAP,cIAP
R14411 T22039 T22038 punct ",",cIAP
R14412 T22040 T22041 amod cellular,inhibitor
R14413 T22041 T22038 appos inhibitor,cIAP
R14414 T22042 T22041 prep of,inhibitor
R14415 T22043 T22042 pobj apoptosis,of
R14416 T22044 T22038 punct ;,cIAP
R14417 T22045 T22038 conj IKK,cIAP
R14418 T22046 T22045 punct ",",IKK
R14419 T22047 T22048 compound IκB,kinase
R14420 T22048 T22045 appos kinase,IKK
R14421 T22049 T22045 punct ;,IKK
R14422 T22050 T22045 conj NF,IKK
R14423 T22051 T22050 punct ",",NF
R14424 T22052 T22053 amod nuclear,factor
R14425 T22053 T22050 appos factor,NF
R14426 T22054 T22050 punct ;,NF
R14427 T22055 T22050 conj RANK,NF
R14428 T22056 T22055 punct ",",RANK
R14429 T22057 T22058 compound receptor,activator
R14430 T22058 T22038 appos activator,cIAP
R14431 T22059 T22058 prep of,activator
R14432 T22060 T22059 pobj NF-κB,of
R14433 T22061 T22038 punct ;,cIAP
R14434 T22062 T22038 conj TRAF,cIAP
R14435 T22063 T22066 punct ",",factor
R14436 T22064 T22066 nmod TNF,factor
R14437 T22065 T22066 amod receptor-associated,factor
R14438 T22066 T22038 appos factor,cIAP
R14439 T22067 T22038 punct ;,cIAP
R14440 T22068 T22038 conj TNF,cIAP
R14441 T22069 T22068 punct ",",TNF
R14442 T22070 T22072 compound tumour,factor
R14443 T22071 T22072 compound necrosis,factor
R14444 T22072 T22038 appos factor,cIAP
R14445 T22073 T22038 punct .,cIAP

DLUT931

Id Subject Object Predicate Lexical cue
T22211 173-182 Negative_regulation denotes inhibitor
T22210 60-69 Regulation denotes regulator
T22189 312-334 Protein denotes tumour necrosis factor
T22188 307-310 Protein denotes TNF
T22187 240-267 Protein denotes receptor activator of NF-κB
T22186 234-238 Protein denotes RANK
T22185 15-20 Protein denotes TRAF1
T22184 8-13 Protein denotes TRAF3
R14497 T22185 T22210 themeOf TRAF1,regulator
R14498 T22186 T22211 themeOf RANK,inhibitor
R14499 T22187 T22211 themeOf receptor activator of NF-κB,inhibitor
R14500 T22188 T22211 themeOf TNF,inhibitor
R14501 T22189 T22211 themeOf tumour necrosis factor,inhibitor

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T22106 275-305 http://www.uniprot.org/uniprot/Q9Y4K3 denotes TNF receptor-associated factor
T22105 307-310 http://www.uniprot.org/uniprot/P01375 denotes TNF
T22104 275-278 http://www.uniprot.org/uniprot/P01375 denotes TNF
T22103 125-128 http://www.uniprot.org/uniprot/P01375 denotes TNF
T22098 202-212 http://www.uniprot.org/uniprot/Q60680-2 denotes IκB kinase
T22096 202-212 http://www.uniprot.org/uniprot/O15111 denotes IκB kinase
T22091 275-305 http://www.uniprot.org/uniprot/Q13114 denotes TNF receptor-associated factor
T22090 8-13 http://www.uniprot.org/uniprot/Q13114 denotes TRAF3
T22085 275-305 http://www.uniprot.org/uniprot/Q12933 denotes TNF receptor-associated factor

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T21531 312-334 Protein denotes tumour necrosis factor
T21530 307-310 Protein denotes TNF
T21529 240-267 Protein denotes receptor activator of NF-κB
T21528 234-238 Protein denotes RANK
T21527 15-20 Protein denotes TRAF1
T21526 8-13 Protein denotes TRAF3

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T21741 328-334 NN denotes factor
T21740 319-327 NN denotes necrosis
T21739 312-318 NN denotes tumour
T21738 310-311 -COMMA- denotes ,
T21737 307-310 NN denotes TNF
T21736 305-306 -COLON- denotes ;
T21735 299-305 NN denotes factor
T21734 279-298 JJ denotes receptor-associated
T21733 275-278 NN denotes TNF
T21732 273-274 -COMMA- denotes ,
T21731 269-273 NN denotes TRAF
T21730 267-268 -COLON- denotes ;
T21729 262-267 NN denotes NF-κB
T21728 259-261 IN denotes of
T21727 249-258 NN denotes activator
T21726 240-248 NN denotes receptor
T21725 238-239 -COMMA- denotes ,
T21724 234-238 NN denotes RANK
T21723 232-233 -COLON- denotes ;
T21722 226-232 NN denotes factor
T21721 218-225 JJ denotes nuclear
T21720 216-217 -COMMA- denotes ,
T21719 214-216 NN denotes NF
T21718 212-213 -COLON- denotes ;
T21717 206-212 NN denotes kinase
T21716 202-205 NN denotes IκB
T21715 200-201 -COMMA- denotes ,
T21714 197-200 NN denotes IKK
T21713 195-196 -COLON- denotes ;
T21712 186-195 NN denotes apoptosis
T21711 183-185 IN denotes of
T21710 173-182 NN denotes inhibitor
T21709 164-172 JJ denotes cellular
T21708 162-163 -COMMA- denotes ,
T21707 158-162 NN denotes cIAP
T21706 149-157 NN denotes factors.
T21705 129-148 JJ denotes receptor-associated
T21704 125-128 NN denotes TNF
T21703 119-124 JJ denotes other
T21702 114-118 IN denotes with
T21701 104-113 VB denotes competing
T21700 101-103 IN denotes by
T21699 92-100 RB denotes probably
T21698 87-91 RB denotes most
T21697 85-86 -COMMA- denotes ,
T21696 78-85 NN denotes pathway
T21695 73-77 DT denotes this
T21694 70-72 IN denotes of
T21693 60-69 NN denotes regulator
T21692 51-59 JJ denotes negative
T21691 49-50 DT denotes a
T21690 46-48 IN denotes as
T21689 35-45 VB denotes identified
T21688 30-34 VB denotes been
T21687 25-29 RB denotes also
T21686 21-24 VB denotes has
T21685 15-20 NN denotes TRAF1
T21684 13-14 -COMMA- denotes ,
T21683 8-13 NN denotes TRAF3
T21682 5-7 TO denotes to
T21681 0-4 JJ denotes Next
R14175 T21693 T21691 arg1Of regulator,a
R14176 T21693 T21692 arg1Of regulator,negative
R14177 T21693 T21694 arg1Of regulator,of
R14161 T21681 T21682 arg1Of Next,to
R14162 T21683 T21682 arg2Of TRAF3,to
R14163 T21685 T21686 arg1Of TRAF1,has
R14164 T21685 T21688 arg1Of TRAF1,been
R14165 T21685 T21689 arg2Of TRAF1,identified
R14166 T21689 T21681 arg1Of identified,Next
R14167 T21689 T21684 arg1Of identified,","
R14168 T21689 T21686 arg2Of identified,has
R14169 T21689 T21687 arg1Of identified,also
R14170 T21689 T21688 arg2Of identified,been
R14171 T21689 T21690 arg1Of identified,as
R14172 T21689 T21697 arg1Of identified,","
R14173 T21689 T21700 arg1Of identified,by
R14174 T21693 T21690 arg2Of regulator,as
R14178 T21696 T21694 arg2Of pathway,of
R14179 T21696 T21695 arg1Of pathway,this
R14180 T21699 T21698 arg1Of probably,most
R14181 T21700 T21699 arg1Of by,probably
R14182 T21701 T21700 arg2Of competing,by
R14183 T21701 T21702 arg1Of competing,with
R14184 T21701 T21718 arg1Of competing,;
R14185 T21707 T21702 arg2Of cIAP,with
R14186 T21707 T21703 arg1Of cIAP,other
R14187 T21707 T21704 arg1Of cIAP,TNF
R14188 T21707 T21705 arg1Of cIAP,receptor-associated
R14189 T21707 T21706 arg1Of cIAP,factors.
R14190 T21707 T21708 arg1Of cIAP,","
R14191 T21707 T21713 arg1Of cIAP,;
R14192 T21710 T21708 arg2Of inhibitor,","
R14193 T21710 T21709 arg1Of inhibitor,cellular
R14194 T21710 T21711 arg1Of inhibitor,of
R14195 T21712 T21711 arg2Of apoptosis,of
R14196 T21714 T21713 arg2Of IKK,;
R14197 T21714 T21715 arg1Of IKK,","
R14198 T21717 T21715 arg2Of kinase,","
R14199 T21717 T21716 arg1Of kinase,IκB
R14200 T21719 T21689 arg3Of NF,identified
R14201 T21719 T21720 arg1Of NF,","
R14202 T21719 T21723 arg1Of NF,;
R14203 T21722 T21720 arg2Of factor,","
R14204 T21722 T21721 arg1Of factor,nuclear
R14205 T21724 T21723 arg2Of RANK,;
R14206 T21724 T21725 arg1Of RANK,","
R14207 T21724 T21730 arg1Of RANK,;
R14208 T21727 T21725 arg2Of activator,","
R14209 T21727 T21726 arg1Of activator,receptor
R14210 T21727 T21728 arg1Of activator,of
R14211 T21729 T21728 arg2Of NF-κB,of
R14212 T21731 T21730 arg2Of TRAF,;
R14213 T21731 T21732 arg1Of TRAF,","
R14214 T21731 T21736 arg1Of TRAF,;
R14215 T21735 T21732 arg2Of factor,","
R14216 T21735 T21733 arg1Of factor,TNF
R14217 T21735 T21734 arg1Of factor,receptor-associated
R14218 T21737 T21736 arg2Of TNF,;
R14219 T21737 T21738 arg1Of TNF,","
R14220 T21741 T21738 arg2Of factor,","
R14221 T21741 T21739 arg1Of factor,tumour
R14222 T21741 T21740 arg1Of factor,necrosis

GO-BP

Id Subject Object Predicate Lexical cue
T21763 319-327 http://purl.obolibrary.org/obo/GO_0070265 denotes necrosis
T21762 319-327 http://purl.obolibrary.org/obo/GO_0019835 denotes necrosis
T21761 319-327 http://purl.obolibrary.org/obo/GO_0008219 denotes necrosis
T21760 319-327 http://purl.obolibrary.org/obo/GO_0001906 denotes necrosis
T21759 249-267 http://purl.obolibrary.org/obo/GO_0051092 denotes activator of NF-κB
T21758 197-200 http://purl.obolibrary.org/obo/GO_0008384 denotes IKK
T21757 186-195 http://purl.obolibrary.org/obo/GO_0097194 denotes apoptosis
T21756 186-195 http://purl.obolibrary.org/obo/GO_0006915 denotes apoptosis
T21755 164-172 http://purl.obolibrary.org/obo/GO_0007349 denotes cellular

GO-MF

Id Subject Object Predicate Lexical cue
T21775 197-200 http://purl.obolibrary.org/obo/GO_0008384 denotes IKK

sentences

Id Subject Object Predicate Lexical cue
T21409 0-335 Sentence denotes Next to TRAF3, TRAF1 has also been identified as a negative regulator of this pathway, most probably by competing with other TNF receptor-associated factors. cIAP, cellular inhibitor of apoptosis; IKK, IκB kinase; NF, nuclear factor; RANK, receptor activator of NF-κB; TRAF, TNF receptor-associated factor; TNF, tumour necrosis factor.
T82 0-335 Sentence denotes Next to TRAF3, TRAF1 has also been identified as a negative regulator of this pathway, most probably by competing with other TNF receptor-associated factors. cIAP, cellular inhibitor of apoptosis; IKK, IκB kinase; NF, nuclear factor; RANK, receptor activator of NF-κB; TRAF, TNF receptor-associated factor; TNF, tumour necrosis factor.

simple1

Id Subject Object Predicate Lexical cue
T21853 312-334 Protein denotes tumour necrosis factor
T21852 307-310 Protein denotes TNF
T21851 240-267 Protein denotes receptor activator of NF-κB
T21850 234-238 Protein denotes RANK
T21849 15-20 Protein denotes TRAF1
T21848 8-13 Protein denotes TRAF3

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T22400 312-334 Protein denotes tumour necrosis factor
T22399 307-310 Protein denotes TNF
T22398 240-267 Protein denotes receptor activator of NF-κB
T22397 234-238 Protein denotes RANK
T22396 15-20 Protein denotes TRAF1
T22395 8-13 Protein denotes TRAF3

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T22140 312-334 Protein denotes tumour necrosis factor
T22139 307-310 Protein denotes TNF
T22138 240-267 Protein denotes receptor activator of NF-κB
T22137 234-238 Protein denotes RANK
T22136 15-20 Protein denotes TRAF1
T22135 8-13 Protein denotes TRAF3

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T22474 275-310 Binding denotes TNF receptor-associated factor; TNF
T22473 275-278 Protein denotes TNF
T22472 158-162 Protein denotes cIAP
T22461 234-239 Protein denotes RANK,
T22458 129-148 Protein denotes receptor-associated
T22456 8-13 Protein denotes TRAF3
T22452 15-20 Protein denotes TRAF1
T22447 275-298 Protein denotes TNF receptor-associated
T22446 269-311 Protein denotes TRAF, TNF receptor-associated factor; TNF,
T22444 275-310 Protein denotes TNF receptor-associated factor; TNF
T22439 214-334 Protein denotes NF, nuclear factor; RANK, receptor activator of NF-κB; TRAF, TNF receptor-associated factor; TNF, tumour necrosis factor
T22434 125-128 Protein denotes TNF
T22433 164-212 Entity denotes cellular inhibitor of apoptosis; IKK, IκB kinase
T22432 214-334 Protein denotes NF, nuclear factor; RANK, receptor activator of NF-κB; TRAF, TNF receptor-associated factor; TNF, tumour necrosis factor
T22424 186-212 Protein denotes apoptosis; IKK, IκB kinase
R14599 T22444 T22474 themeOf TNF receptor-associated factor; TNF,TNF receptor-associated factor; TNF
R14601 T22447 T22474 themeOf TNF receptor-associated,TNF receptor-associated factor; TNF

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T22308 312-334 Protein denotes tumour necrosis factor
T22307 307-310 Protein denotes TNF
T22306 275-305 Protein denotes TNF receptor-associated factor
T22305 269-273 Protein denotes TRAF
T22304 262-267 Protein denotes NF-κB
T22303 234-238 Protein denotes RANK
T22302 214-232 Protein denotes NF, nuclear factor
T22301 202-212 Protein denotes IκB kinase
T22300 197-200 Protein denotes IKK
T22299 104-113 Binding denotes competing
T22298 125-156 Protein denotes TNF receptor-associated factors
T22297 15-20 Protein denotes TRAF1
T22296 8-13 Protein denotes TRAF3
R14544 T22297 T22299 themeOf TRAF1,competing
R14545 T22298 T22299 themeOf TNF receptor-associated factors,competing

test3

Id Subject Object Predicate Lexical cue
T21400 312-334 Protein denotes tumour necrosis factor
T21399 307-310 Protein denotes TNF
T21398 240-267 Protein denotes receptor activator of NF-κB
T21397 234-238 Protein denotes RANK
T21396 15-20 Protein denotes TRAF1
T21395 8-13 Protein denotes TRAF3
T21358 312-334 Protein denotes tumour necrosis factor
T21357 307-310 Protein denotes TNF
T21356 240-267 Protein denotes receptor activator of NF-κB
T21355 234-238 Protein denotes RANK
T21354 15-20 Protein denotes TRAF1
T21353 8-13 Protein denotes TRAF3